Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8465657.1

Orthogroup ID

OG0009217

Physical Location & Seq

Genomic Coordinates Reverse (-)

611 .. 1591

Gene Structure 981 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8465657.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

atgttaatgttattttcagagagcttagccaagtttcctcgaaggacgagtacttcatctgggtttcacaatcaagcacagcagtctgatgaacaaatgcagcagcaacagcaacagcaaacggtgggccagaattcaaatgacgcaagctctgtgcaggccaatatgcaacttgctgttagtaatggacctagtggtatggctagtgtaaataacgtgaacacagcatccacatctacctctgcaagcaccattgtgggtctcctccatcaaaattccatgaattccaggcaacagagttcgatgaataatgcaaacagtccctatggaggaagttctgttcagattccatcccctggttcttctagtacaatccctcagactcaagcaaacccttctccattccagtcaccaacaccctcatcgaacaatccatcccaaacatctcatggtgccttgacagctaccaatcacatgagtgcagcaaattcaccagcaaatgtatccatgcaacagccagccctttctggtgaggctgatccaagtgattcccagagctctgtccagaaaattatacacgacatgatgatgtccaaccagcttaatggctcaggtagtatggttggtgtgggttctctgggaaacgatgtgaaaaacatgaatgggattttgtctagtagcaacaacacaggcatgaacggtggcaactgtctgtcggggaatgtcatgggcaacagtaactcaggtatggggggtggtggatttgggagtatgggtggacttggtcagcctgccatggttaatggaataagagctgcaatgggaaataattctgttatgaatggaagggttggaatggcatcaatggctcgagaacaaagtatgcatcatcaacaggatatagggagccagctacttagtgggcttggagcggttaatgggtttaataatcttcaatttgattggaaacattctccttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009909 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0010243 GO:0010272 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0035670 GO:0036293 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0046898 GO:0046982 GO:0046983 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060090 GO:0060992 GO:0061458 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0090567 GO:0097159 GO:0097305 GO:0099402 GO:1901363 GO:1901654 GO:1901698 GO:1901700 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM_bind

Protein Analysis

326

Amino Acids

33.53

Weight (kDa)

6.42

Isoelectric Point (pI)

52.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43850 AT1G43850
fragaria_vesca	FvH4_2g14890
malus_domestica	MD05G1012000.v1.1 MD10G1012000.v1.1
prunus_persica	Prupe.8G017000_v2.0.a1 Prupe.8G017000_v2.0.a1 Prupe.8G017000_v2.0.a1
pyrus_communis	pycom05g00700 pycom10g00760
rosa_chinensis	RchiOBHm_Chr6g0277461
rosa_laevigata	RLG00000013299
rosa_multiflora	Rmu_co8465657.1_g000001 Rmu_sc0003910.1_g000012
rosa_roxburghii	Rroxscaffold_7G00191290
rosa_rugosa	Rorug06G0108400 Rorug06G0108500
rosa_samantha	Rh6AG219300 Rh6BG223200 Rh6CG225700 Rh6DG216000
rosa_wichuraiana	Rw6G019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	452
AccB7I	CCANNNNNTGG	1 cut(s)	356
AccBSI	CCGCTC	1 cut(s)	932
AciI	CCGC	1 cut(s)	932
AclWI	GGATC	1 cut(s)	533
AcsI	RAATTY	4 cut(s)	133, 274, 283, 487
AfaI	GTAC	2 cut(s)	52, 370
AfiI	CCNNNNNNNGG	2 cut(s)	329, 356
AgsI	TTSAA	2 cut(s)	138, 956
AjnI	CCWGG	2 cut(s)	287, 355
AleI	CACNNNNGTG	2 cut(s)	254, 477
AloI	GAACNNNNNNTCC	6 cut(s)	212, 244, 324, 356, 419, 451
AluBI	AGCT	7 cut(s)	24, 150, 464, 558, 601, 815, 913
AluI	AGCT	7 cut(s)	24, 150, 464, 558, 601, 815, 913
Alw21I	GWGCWC	1 cut(s)	560
Alw26I	GTCTC	1 cut(s)	266
AlwI	GGATC	1 cut(s)	533
Ama87I	CYCGRG	1 cut(s)	870
AoxI	GGCC	2 cut(s)	127, 159
ApeKI	GCWGC	4 cut(s)	100, 103, 482, 815
ApoI	RAATTY	4 cut(s)	133, 274, 283, 487
Asp700I	GAANNNNTTC	1 cut(s)	829
AspS9I	GGNCC	2 cut(s)	127, 188
AsuHPI	GGTGA	3 cut(s)	402, 483, 542
AvaI	CYCGRG	1 cut(s)	870
AvaII	GGWCC	1 cut(s)	188
BanI	GGYRCC	1 cut(s)	452
BanII	GRGCYC	1 cut(s)	560
BarI	GAAGNNNNNNTAC	2 cut(s)	34, 66
Bbv12I	GWGCWC	1 cut(s)	560
BbvI	GCAGC	4 cut(s)	112, 115, 494, 802
BccI	CCATC	3 cut(s)	276, 358, 442
BciT130I	CCWGG	2 cut(s)	289, 357
BciVI	GTATCC	1 cut(s)	514
BcoDI	GTCTC	1 cut(s)	266
BfaI	CTAG	4 cut(s)	192, 204, 366, 675
BfuI	GTATCC	1 cut(s)	514
BisI	GCNGC	4 cut(s)	101, 104, 483, 816
BlpI	GCTNAGC	1 cut(s)	25
BlsI	GCNGC	4 cut(s)	102, 105, 484, 817
BmcAI	AGTACT	1 cut(s)	52
Bme1390I	CCNGG	2 cut(s)	289, 357
Bme18I	GGWCC	1 cut(s)	188
BmeT110I	CYCGRG	1 cut(s)	870
BmgT120I	GGNCC	2 cut(s)	127, 188
BmiI	GGNNCC	2 cut(s)	454, 908
BmrFI	CCNGG	2 cut(s)	289, 357
BmsI	GCATC	3 cut(s)	236, 869, 895
Bpu10I	CCTNAGC	1 cut(s)	610
Bpu1102I	GCTNAGC	1 cut(s)	25
BpuEI	CTTGAG	1 cut(s)	369
BsaI	GGTCTC	1 cut(s)	266
BsaJI	CCNNGG	2 cut(s)	355, 795
BsaXI	ACNNNNNCTCC	2 cut(s)	760, 790
Bsc4I	CCNNNNNNNGG	2 cut(s)	329, 356
Bse1I	ACTGG	1 cut(s)	406
Bse3DI	GCAATG	1 cut(s)	825
BseBI	CCWGG	2 cut(s)	289, 357
BseDI	CCNNGG	2 cut(s)	355, 795
BseGI	GGATG	3 cut(s)	227, 350, 434
BseLI	CCNNNNNNNGG	2 cut(s)	329, 356
BseMI	GCAATG	1 cut(s)	825
BseMII	CTCAG	3 cut(s)	392, 624, 756
BseNI	ACTGG	1 cut(s)	406
BseRI	GAGGAG	1 cut(s)	254
BseXI	GCAGC	4 cut(s)	112, 115, 494, 802
BsgI	GTGCAG	2 cut(s)	176, 501
BshFI	GGCC	2 cut(s)	129, 161
BshNI	GGYRCC	1 cut(s)	452
BsiHKAI	GWGCWC	1 cut(s)	560
BsiHKCI	CYCGRG	1 cut(s)	870
BslFI	GGGAC	1 cut(s)	306
BslI	CCNNNNNNNGG	2 cut(s)	329, 356
BsmAI	GTCTC	1 cut(s)	266
BsmFI	GGGAC	1 cut(s)	306
BsnI	GGCC	2 cut(s)	129, 161
Bso31I	GGTCTC	1 cut(s)	266
BsoBI	CYCGRG	1 cut(s)	870
Bsp1286I	GDGCHC	1 cut(s)	560
Bsp143I	GATC	1 cut(s)	538
Bsp1720I	GCTNAGC	1 cut(s)	25
Bsp19I	CCATGG	1 cut(s)	795
BspACI	CCGC	1 cut(s)	932
BspANI	GGCC	2 cut(s)	129, 161
BspCNI	CTCAG	3 cut(s)	391, 623, 755
BspLI	GGNNCC	2 cut(s)	454, 908
BspPI	GGATC	1 cut(s)	533
BspT107I	GGYRCC	1 cut(s)	452
BspTNI	GGTCTC	1 cut(s)	266
BsrBI	CCGCTC	1 cut(s)	932
BsrDI	GCAATG	1 cut(s)	825
BsrI	ACTGG	1 cut(s)	406
BssECI	CCNNGG	2 cut(s)	355, 795
BssMI	GATC	1 cut(s)	538
BssT1I	CCWWGG	1 cut(s)	795
Bst2UI	CCWGG	2 cut(s)	289, 357
Bst4CI	ACNGT	5 cut(s)	124, 320, 701, 710, 737
BstC8I	GCNNGC	6 cut(s)	148, 159, 247, 519, 792, 911
BstDEI	CTNAG	5 cut(s)	25, 378, 610, 742, 917
BstDSI	CCRYGG	1 cut(s)	795
BstF5I	GGATG	3 cut(s)	227, 350, 434
BstKTI	GATC	1 cut(s)	541
BstMAI	GTCTC	1 cut(s)	266
BstMBI	GATC	1 cut(s)	538
BstMWI	GCNNNNNNNGC	3 cut(s)	109, 461, 866
BstNI	CCWGG	2 cut(s)	289, 357
BstSCI	CCNGG	2 cut(s)	287, 355
BstV1I	GCAGC	4 cut(s)	112, 115, 494, 802
BstXI	CCANNNNNNTGG	1 cut(s)	605
BsuI	GTATCC	1 cut(s)	514
BsuRI	GGCC	2 cut(s)	129, 161
BtgI	CCRYGG	1 cut(s)	795
BtsCI	GGATG	3 cut(s)	227, 350, 434
Cac8I	GCNNGC	6 cut(s)	148, 159, 247, 519, 792, 911
Cfr13I	GGNCC	2 cut(s)	127, 188
CseI	GACGC	1 cut(s)	152
Csp6I	GTAC	2 cut(s)	51, 369
CviAII	CATG	9 cut(s)	280, 449, 475, 508, 583, 658, 694, 727, 796
CviQI	GTAC	2 cut(s)	51, 369
DdeI	CTNAG	5 cut(s)	25, 378, 610, 742, 917
DpnI	GATC	1 cut(s)	540
DpnII	GATC	1 cut(s)	538
Ecl136II	GAGCTC	1 cut(s)	558
Eco130I	CCWWGG	1 cut(s)	795
Eco24I	GRGCYC	1 cut(s)	560
Eco31I	GGTCTC	1 cut(s)	266
Eco47I	GGWCC	1 cut(s)	188
Eco53kI	GAGCTC	1 cut(s)	558
Eco88I	CYCGRG	1 cut(s)	870
EcoICRI	GAGCTC	1 cut(s)	558
EcoRI	GAATTC	2 cut(s)	133, 283
EcoRII	CCWGG	2 cut(s)	287, 355
EcoT14I	CCWWGG	1 cut(s)	795
EcoT22I	ATGCAT	1 cut(s)	888
EcoT38I	GRGCYC	1 cut(s)	560
ErhI	CCWWGG	1 cut(s)	795
FaeI	CATG	9 cut(s)	283, 452, 478, 511, 586, 661, 697, 730, 799
FaqI	GGGAC	1 cut(s)	306
FatI	CATG	9 cut(s)	279, 448, 474, 507, 582, 657, 693, 726, 795
Fnu4HI	GCNGC	4 cut(s)	101, 104, 483, 816
FokI	GGATG	3 cut(s)	214, 337, 421
FriOI	GRGCYC	1 cut(s)	560
Fsp4HI	GCNGC	4 cut(s)	101, 104, 483, 816
FspBI	CTAG	4 cut(s)	192, 204, 366, 675
GluI	GCNGC	4 cut(s)	101, 104, 483, 816
HaeIII	GGCC	2 cut(s)	129, 161
HgaI	GACGC	1 cut(s)	152
Hin1II	CATG	9 cut(s)	283, 452, 478, 511, 586, 661, 697, 730, 799
HinfI	GANTC	3 cut(s)	346, 382, 548
HphI	GGTGA	3 cut(s)	402, 483, 542
Hpy166II	GTNNAC	2 cut(s)	220, 779
Hpy188I	TCNGA	4 cut(s)	19, 88, 345, 381
Hpy188III	TCNNGA	2 cut(s)	565, 872
Hpy8I	GTNNAC	2 cut(s)	220, 779
HpyAV	CCTTC	3 cut(s)	36, 405, 840
HpyCH4III	ACNGT	5 cut(s)	124, 320, 701, 710, 737
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	9 cut(s)	100, 157, 169, 245, 314, 482, 511, 818, 886
HpyF10VI	GCNNNNNNNGC	3 cut(s)	109, 461, 866
HpyF3I	CTNAG	5 cut(s)	25, 378, 610, 742, 917
HpySE526I	ACGT	1 cut(s)	216
Hsp92II	CATG	9 cut(s)	283, 452, 478, 511, 586, 661, 697, 730, 799
Kzo9I	GATC	1 cut(s)	538
LmnI	GCTCC	2 cut(s)	906, 929
Lsp1109I	GCAGC	4 cut(s)	112, 115, 494, 802
LweI	GCATC	3 cut(s)	236, 869, 895
MaeI	CTAG	4 cut(s)	192, 204, 366, 675
MaeII	ACGT	1 cut(s)	216
MaeIII	GTNAC	2 cut(s)	408, 737
MalI	GATC	1 cut(s)	540
MbiI	CCGCTC	1 cut(s)	932
MboI	GATC	1 cut(s)	538
MboII	GAAGA	2 cut(s)	354, 944
MhlI	GDGCHC	1 cut(s)	560
MluCI	AATT	7 cut(s)	133, 274, 283, 487, 570, 829, 956
MlyI	GAGTC	1 cut(s)	376
MmeI	TCCRAC	2 cut(s)	618, 832
MnlI	CCTC	7 cut(s)	48, 250, 275, 323, 387, 430, 526
Mph1103I	ATGCAT	1 cut(s)	888
MroXI	GAANNNNTTC	1 cut(s)	829
MseI	TTAA	6 cut(s)	5, 603, 801, 936, 945, 979
MslI	CAYNNNNRTG	4 cut(s)	254, 477, 587, 692
MspR9I	CCNGG	2 cut(s)	289, 357
MvaI	CCWGG	2 cut(s)	289, 357
MwoI	GCNNNNNNNGC	3 cut(s)	109, 461, 866
NcoI	CCATGG	1 cut(s)	795
NdeII	GATC	1 cut(s)	538
NlaIII	CATG	9 cut(s)	283, 452, 478, 511, 586, 661, 697, 730, 799
NlaIV	GGNNCC	2 cut(s)	454, 908
NmuCI	GTSAC	1 cut(s)	408
NsiI	ATGCAT	1 cut(s)	888
OliI	CACNNNNGTG	2 cut(s)	254, 477
PaeR7I	CTCGAG	1 cut(s)	870
PdmI	GAANNNNTTC	1 cut(s)	829
PfeI	GAWTC	2 cut(s)	346, 548
PflFI	GACNNNGTC	1 cut(s)	783
PflMI	CCANNNNNTGG	1 cut(s)	356
PkrI	GCNGC	4 cut(s)	102, 105, 484, 817
PleI	GAGTC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	376
Psp124BI	GAGCTC	1 cut(s)	560
Psp6I	CCWGG	2 cut(s)	287, 355
PspGI	CCWGG	2 cut(s)	287, 355
PspN4I	GGNNCC	2 cut(s)	454, 908
PspPI	GGNCC	2 cut(s)	127, 188
PsyI	GACNNNGTC	1 cut(s)	783
RsaI	GTAC	2 cut(s)	52, 370
RsaNI	GTAC	2 cut(s)	51, 369
RseI	CAYNNNNRTG	4 cut(s)	254, 477, 587, 692
SacI	GAGCTC	1 cut(s)	560
SaqAI	TTAA	6 cut(s)	5, 603, 801, 936, 945, 979
SatI	GCNGC	4 cut(s)	101, 104, 483, 816
Sau3AI	GATC	1 cut(s)	538
Sau96I	GGNCC	2 cut(s)	127, 188
ScaI	AGTACT	1 cut(s)	52
SchI	GAGTC	1 cut(s)	376
ScrFI	CCNGG	2 cut(s)	289, 357
SduI	GDGCHC	1 cut(s)	560
SfaNI	GCATC	3 cut(s)	236, 869, 895
Sfr274I	CTCGAG	1 cut(s)	870
SinI	GGWCC	1 cut(s)	188
SlaI	CTCGAG	1 cut(s)	870
SmiMI	CAYNNNNRTG	4 cut(s)	254, 477, 587, 692
SmlI	CTYRAG	2 cut(s)	384, 870
SmoI	CTYRAG	2 cut(s)	384, 870
Sse9I	AATT	7 cut(s)	133, 274, 283, 487, 570, 829, 956
SsiI	CCGC	1 cut(s)	932
SspMI	CTAG	4 cut(s)	192, 204, 366, 675
SstI	GAGCTC	1 cut(s)	560
StyD4I	CCNGG	2 cut(s)	287, 355
StyI	CCWWGG	1 cut(s)	795
TaaI	ACNGT	5 cut(s)	124, 320, 701, 710, 737
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	4 cut(s)	40, 302, 425, 871
TasI	AATT	7 cut(s)	133, 274, 283, 487, 570, 829, 956
TatI	WGTACW	2 cut(s)	50, 368
TfiI	GAWTC	2 cut(s)	346, 548
Tru1I	TTAA	6 cut(s)	5, 603, 801, 936, 945, 979
Tru9I	TTAA	6 cut(s)	5, 603, 801, 936, 945, 979
TseFI	GTSAC	1 cut(s)	408
TseI	GCWGC	4 cut(s)	100, 103, 482, 815
Tsp45I	GTSAC	1 cut(s)	408
TspDTI	ATGAA	7 cut(s)	45, 105, 296, 320, 674, 710, 854
Tth111I	GACNNNGTC	1 cut(s)	783
Van91I	CCANNNNNTGG	1 cut(s)	356
VpaK11BI	GGWCC	1 cut(s)	188
XapI	RAATTY	4 cut(s)	133, 274, 283, 487
XcmI	CCANNNNNNNNNTGG	2 cut(s)	446, 917
XhoI	CTCGAG	1 cut(s)	870
XmnI	GAANNNNTTC	1 cut(s)	829
XspI	CTAG	4 cut(s)	192, 204, 366, 675
ZrmI	AGTACT	1 cut(s)	52
Zsp2I	ATGCAT	1 cut(s)	888

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.