Rorug06G0108400

transcriptional co-repressor

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
14682047 .. 14685104
3058 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0108400.1

Sequence Viewer

Length: 870 bp
ATGCTATTAAAGAAATCAAACAGGTGTGGATTGCAATTACGATTTCAGGGTTTTAGCAAACAGCGAAGCAGAGACGAAGAAGTAAAACCCAAAATGGGTACAACAGAAGACCCGAACGGAGCTCAGAAAAGTCGCGTTGGCCCAACCACTACTCTGGCTTGCCTCGACCCTCAATACTGGGATGAGCGGTTCACTACTGAGGAGCATTACGAGTGGCTCAAGGACTATTCTCACTTTCGGCACCTCATTCAATCCCATCTCAATCCCAATTCTTCTATCTTGGAGCTGGGTTGTGGAAATTCACAGTTATGTGAGGAATTATATAATGATGGGTTTACTGAAATAACATGCATTGATCTATCTGCTGTTGCAGTGGAGAATATGCAGAAGAAGTTACTGTCTAAAGGTCTTCAAGAAATAAAAGTTCTGGAAGCTGACATGCTAGACCTGCCTTTTAGCAACGAGTGTTTTGATGTTGTTATTGAGAAAGGAACCATGGAGGTATTGTTCGTGGATAGTGGTGACCCATGGAATCCCCGGCCTGCAACGGTAACCAAGGTCATGAAGATGCTTGAGGGCATTCATAGGGTTTTGAAACCAGATGGGATATACATTTCAATTTCTTTTGGCCAGCCACATTTCAGGCGCCCTTTATTTGAGGCTCCACAGTTTACCTGGTCTGTAGAGTGGAGTACCTTTGGTGATGGATTTCACTATTTCTTCTATACATTGAAGAAGGGAAGAAGATCACCAGATAATAAACGATCGAGTGATGAGAAGTTAGAGAGGCCATCCATAAATCTTTATCAAGATGAATTAGAGGGTGAAGACTTCATTTTCCGAACCAATTTGGATGAGCTCAGCTCTTAG

Protein Analysis

289

Amino Acids

33.43

Weight (kDa)

5.3

Isoelectric Point (pI)

49.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_31 PF13847 88 - 210 2.8e-19 Methyltransferase domain
Methyltransf_25 PF13649 93 - 202 2.6e-14 Methyltransferase domain
Methyltransf_11 PF08241 94 - 205 7.2e-15 Methyltransferase domain
Methyltransf_12 PF08242 94 - 203 3.6e-09 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000545)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36571
pyrus_communis pycom02g01560 pycom08g10820 pycom09g05820 pycom13g21850 pycom14g16010
rosa_chinensis RchiOBHm_Chr2g0094861 RchiOBHm_Chr2g0124911 RchiOBHm_Chr2g0138581 RchiOBHm_Chr2g0160851 RchiOBHm_Chr4g0407411
rosa_laevigata RLG00000001652 RLG00000001872 RLG00000002037 RLG00000003076 RLG00000006419 RLG00000016771 RLG00000017383 RLG00000022851 RLG00000030563 RLG00000033869 RLG00000034176
rosa_multiflora Rmu_co8013424.1_g000001 Rmu_co8016716.1_g000001 Rmu_co8183472.1_g000001 Rmu_co8254047.1_g000001 Rmu_co8354891.1_g000001 Rmu_sc0000124.1_g000003 Rmu_sc0002132.1_g000027 Rmu_sc0003007.1_g000011 Rmu_sc0003221.1_g000096 Rmu_sc0003221.1_g000097 Rmu_sc0005119.1_g000004 Rmu_sc0008057.1_g000005 Rmu_sc0034532.1_g000001 Rmu_sc0036406.1_g000001 Rmu_ssc0000008.1_g000009
rosa_roxburghii Rroxscaffold_1G00030520 Rroxscaffold_2G00107360 Rroxscaffold_2G00153420 Rroxscaffold_5G00335750 Rroxscaffold_5G00351760 Rroxscaffold_5G00352080 Rroxscaffold_6G00419090
rosa_rugosa Rorug01G0341800 Rorug01G0341900 Rorug02G0180200 Rorug02G0180300 Rorug03G0186100 Rorug03G0186200 Rorug03G0284800 Rorug04G0104500 Rorug05G0246300 Rorug06G0108400 Rorug06G0471500 Rorug06G0510400
rosa_samantha Rh1AG159000 Rh1CG148200 Rh1CG189900 Rh2AG552800 Rh2BG473900 Rh2BG612100 Rh2BG612300 Rh2DG094500 Rh2DG482600 Rh3BG234000 Rh3CG320000 Rh4AG144200 Rh4BG127900 Rh4DG097300 Rh5AG128900 Rh5AG381200 Rh5BG363000 Rh5DG491900 Rh6AG048400 Rh6BG168100 Rh6CG005800 Rh6DG006000 Rh7AG255100 Rh7BG360600 Rh7CG271700 Rh7CG482300 Rh7DG451200
rosa_wichuraiana Rw4G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 456
AccB1I GGYRCC 2 cut(s) 240, 645
AccBSI CCGCTC 1 cut(s) 187
AccII CGCG 1 cut(s) 135
AciI CCGC 1 cut(s) 187
AcoI YGGCCR 1 cut(s) 628
AcsI RAATTY 1 cut(s) 298
AcyI GRCGYC 1 cut(s) 646
AfaI GTAC 2 cut(s) 100, 694
AfiI CCNNNNNNNGG 1 cut(s) 95
AgsI TTSAA 5 cut(s) 251, 413, 595, 618, 733
AjnI CCWGG 1 cut(s) 674
AloI GAACNNNNNNTCC 4 cut(s) 173, 205, 491, 523
AluBI AGCT 5 cut(s) 122, 286, 434, 859, 864
AluI AGCT 5 cut(s) 122, 286, 434, 859, 864
Alw21I GWGCWC 2 cut(s) 124, 861
Alw26I GTCTC 1 cut(s) 66
AoxI GGCC 4 cut(s) 139, 539, 628, 788
ApoI RAATTY 1 cut(s) 298
AspLEI GCGC 1 cut(s) 648
AspS9I GGNCC 1 cut(s) 140
AsuC2I CCSGG 1 cut(s) 538
AsuHPI GGTGA 4 cut(s) 533, 713, 741, 836
BalI TGGCCA 1 cut(s) 630
BanI GGYRCC 2 cut(s) 240, 645
BanII GRGCYC 2 cut(s) 124, 861
BbsI GAAGAC 3 cut(s) 114, 401, 834
Bbv12I GWGCWC 2 cut(s) 124, 861
BccI CCATC 5 cut(s) 264, 323, 596, 698, 799
BciT130I CCWGG 1 cut(s) 676
BcnI CCSGG 1 cut(s) 538
BcoDI GTCTC 1 cut(s) 66
BfaI CTAG 1 cut(s) 443
BfmI CTRYAG 1 cut(s) 681
BfoI RGCGCY 1 cut(s) 649
BfuAI ACCTGC 1 cut(s) 456
BlpI GCTNAGC 1 cut(s) 860
Bme1390I CCNGG 2 cut(s) 538, 676
BmgT120I GGNCC 1 cut(s) 140
BmiI GGNNCC 4 cut(s) 242, 493, 647, 663
BmrFI CCNGG 2 cut(s) 538, 676
BmrI ACTGGG 1 cut(s) 187
BmsI GCATC 1 cut(s) 558
BmuI ACTGGG 1 cut(s) 187
BpiI GAAGAC 3 cut(s) 114, 401, 834
BplI GAGNNNNNCTC 1 cut(s) 848
Bpu1102I GCTNAGC 1 cut(s) 860
BpuEI CTTGAG 2 cut(s) 203, 593
BpuMI CCSGG 1 cut(s) 538
BsaHI GRCGYC 1 cut(s) 646
BsaJI CCNNGG 4 cut(s) 495, 527, 536, 555
BsaXI ACNNNNNCTCC 2 cut(s) 491, 521
Bsc4I CCNNNNNNNGG 1 cut(s) 95
Bse1I ACTGG 1 cut(s) 182
BseBI CCWGG 1 cut(s) 676
BseDI CCNNGG 4 cut(s) 495, 527, 536, 555
BseGI GGATG 3 cut(s) 187, 791, 859
BseLI CCNNNNNNNGG 1 cut(s) 95
BseMII CTCAG 2 cut(s) 137, 189
BseNI ACTGG 1 cut(s) 182
BseRI GAGGAG 1 cut(s) 215
BseYI CCCAGC 1 cut(s) 286
Bsh1236I CGCG 1 cut(s) 135
Bsh1285I CGRYCG 1 cut(s) 767
BshFI GGCC 4 cut(s) 141, 541, 630, 790
BshNI GGYRCC 2 cut(s) 240, 645
BsiEI CGRYCG 1 cut(s) 767
BsiHKAI GWGCWC 2 cut(s) 124, 861
BsiSI CCGG 1 cut(s) 538
BslI CCNNNNNNNGG 1 cut(s) 95
BsmAI GTCTC 1 cut(s) 66
BsmBI CGTCTC 1 cut(s) 66
BsmI GAATGC 1 cut(s) 579
BsnI GGCC 4 cut(s) 141, 541, 630, 790
Bsp1286I GDGCHC 2 cut(s) 124, 861
Bsp143I GATC 3 cut(s) 355, 746, 764
Bsp1720I GCTNAGC 1 cut(s) 860
Bsp19I CCATGG 2 cut(s) 495, 527
BspACI CCGC 1 cut(s) 187
BspANI GGCC 4 cut(s) 141, 541, 630, 790
BspCNI CTCAG 2 cut(s) 136, 190
BspFNI CGCG 1 cut(s) 135
BspHI TCATGA 1 cut(s) 561
BspLI GGNNCC 4 cut(s) 242, 493, 647, 663
BspMI ACCTGC 1 cut(s) 456
BspT107I GGYRCC 2 cut(s) 240, 645
BsrBI CCGCTC 1 cut(s) 187
BsrI ACTGG 1 cut(s) 182
BssECI CCNNGG 4 cut(s) 495, 527, 536, 555
BssMI GATC 3 cut(s) 355, 746, 764
BssNI GRCGYC 1 cut(s) 646
BssT1I CCWWGG 3 cut(s) 495, 527, 555
Bst2UI CCWGG 1 cut(s) 676
Bst4CI ACNGT 4 cut(s) 306, 399, 550, 669
BstACI GRCGYC 1 cut(s) 646
BstC8I GCNNGC 3 cut(s) 160, 543, 632
BstDEI CTNAG 4 cut(s) 123, 198, 860, 867
BstDSI CCRYGG 2 cut(s) 495, 527
BstEII GGTNACC 2 cut(s) 521, 550
BstF5I GGATG 3 cut(s) 187, 791, 859
BstFNI CGCG 1 cut(s) 135
BstH2I RGCGCY 1 cut(s) 649
BstHHI GCGC 1 cut(s) 648
BstKTI GATC 3 cut(s) 358, 749, 767
BstMAI GTCTC 1 cut(s) 66
BstMBI GATC 3 cut(s) 355, 746, 764
BstMCI CGRYCG 1 cut(s) 767
BstMWI GCNNNNNNNGC 1 cut(s) 448
BstNI CCWGG 1 cut(s) 676
BstNSI RCATGY 2 cut(s) 351, 442
BstPI GGTNACC 2 cut(s) 521, 550
BstSCI CCNGG 2 cut(s) 536, 674
BstSFI CTRYAG 1 cut(s) 681
BstUI CGCG 1 cut(s) 135
BstV2I GAAGAC 3 cut(s) 114, 401, 834
BstXI CCANNNNNNTGG 1 cut(s) 154
BsuRI GGCC 4 cut(s) 141, 541, 630, 790
BtgI CCRYGG 2 cut(s) 495, 527
BtsCI GGATG 3 cut(s) 187, 791, 859
BtsI GCAGTG 1 cut(s) 378
BtsIMutI CAGTG 1 cut(s) 378
BveI ACCTGC 1 cut(s) 456
Cac8I GCNNGC 3 cut(s) 160, 543, 632
CciI TCATGA 1 cut(s) 561
CfoI GCGC 1 cut(s) 648
Cfr13I GGNCC 1 cut(s) 140
CsiI ACCWGGT 1 cut(s) 674
Csp6I GTAC 2 cut(s) 99, 693
CviAII CATG 5 cut(s) 348, 439, 496, 528, 562
CviQI GTAC 2 cut(s) 99, 693
DdeI CTNAG 4 cut(s) 123, 198, 860, 867
DinI GGCGCC 1 cut(s) 647
DpnI GATC 3 cut(s) 357, 748, 766
DpnII GATC 3 cut(s) 355, 746, 764
EaeI YGGCCR 1 cut(s) 628
Ecl136II GAGCTC 2 cut(s) 122, 859
Eco130I CCWWGG 3 cut(s) 495, 527, 555
Eco24I GRGCYC 2 cut(s) 124, 861
Eco53kI GAGCTC 2 cut(s) 122, 859
Eco91I GGTNACC 2 cut(s) 521, 550
EcoICRI GAGCTC 2 cut(s) 122, 859
EcoO65I GGTNACC 2 cut(s) 521, 550
EcoRII CCWGG 1 cut(s) 674
EcoT14I CCWWGG 3 cut(s) 495, 527, 555
EcoT22I ATGCAT 1 cut(s) 353
EcoT38I GRGCYC 2 cut(s) 124, 861
EgeI GGCGCC 1 cut(s) 647
EheI GGCGCC 1 cut(s) 647
ErhI CCWWGG 3 cut(s) 495, 527, 555
Esp3I CGTCTC 1 cut(s) 66
FaeI CATG 5 cut(s) 351, 442, 499, 531, 565
FatI CATG 5 cut(s) 347, 438, 495, 527, 561
FokI GGATG 3 cut(s) 194, 778, 866
FriOI GRGCYC 2 cut(s) 124, 861
FspBI CTAG 1 cut(s) 443
GlaI GCGC 1 cut(s) 647
GsaI CCCAGC 1 cut(s) 290
HaeII RGCGCY 1 cut(s) 649
HaeIII GGCC 4 cut(s) 141, 541, 630, 790
HapII CCGG 1 cut(s) 538
HhaI GCGC 1 cut(s) 648
Hin1I GRCGYC 1 cut(s) 646
Hin1II CATG 5 cut(s) 351, 442, 499, 531, 565
Hin6I GCGC 1 cut(s) 646
HinP1I GCGC 1 cut(s) 646
HinfI GANTC 1 cut(s) 532
HpaII CCGG 1 cut(s) 538
HphI GGTGA 4 cut(s) 533, 713, 741, 836
Hpy166II GTNNAC 3 cut(s) 192, 336, 672
Hpy188I TCNGA 2 cut(s) 126, 842
Hpy188III TCNNGA 4 cut(s) 413, 428, 562, 809
Hpy8I GTNNAC 3 cut(s) 192, 336, 672
HpyAV CCTTC 1 cut(s) 730
HpyCH4III ACNGT 4 cut(s) 306, 399, 550, 669
HpyCH4V TGCA 5 cut(s) 34, 351, 371, 385, 545
HpyF10VI GCNNNNNNNGC 1 cut(s) 448
HpyF3I CTNAG 4 cut(s) 123, 198, 860, 867
Hsp92I GRCGYC 1 cut(s) 646
Hsp92II CATG 5 cut(s) 351, 442, 499, 531, 565
HspAI GCGC 1 cut(s) 646
KasI GGCGCC 1 cut(s) 645
Kzo9I GATC 3 cut(s) 355, 746, 764
LmnI GCTCC 4 cut(s) 119, 202, 283, 667
LweI GCATC 1 cut(s) 558
MabI ACCWGGT 1 cut(s) 674
MaeI CTAG 1 cut(s) 443
MaeIII GTNAC 3 cut(s) 393, 521, 550
MalI GATC 3 cut(s) 357, 748, 766
MbiI CCGCTC 1 cut(s) 187
MboI GATC 3 cut(s) 355, 746, 764
MhlI GDGCHC 2 cut(s) 124, 861
MlsI TGGCCA 1 cut(s) 630
MluCI AATT 7 cut(s) 35, 268, 298, 317, 618, 815, 847
MluNI TGGCCA 1 cut(s) 630
Mly113I GGCGCC 1 cut(s) 646
Mox20I TGGCCA 1 cut(s) 630
Mph1103I ATGCAT 1 cut(s) 353
MscI TGGCCA 1 cut(s) 630
MseI TTAA 1 cut(s) 8
MslI CAYNNNNRTG 2 cut(s) 307, 566
Msp20I TGGCCA 1 cut(s) 630
MspI CCGG 1 cut(s) 538
MspR9I CCNGG 2 cut(s) 538, 676
Mva1269I GAATGC 1 cut(s) 579
MvaI CCWGG 1 cut(s) 676
MvnI CGCG 1 cut(s) 135
MwoI GCNNNNNNNGC 1 cut(s) 448
NarI GGCGCC 1 cut(s) 646
NciI CCSGG 1 cut(s) 538
NcoI CCATGG 2 cut(s) 495, 527
NdeII GATC 3 cut(s) 355, 746, 764
NlaIII CATG 5 cut(s) 351, 442, 499, 531, 565
NlaIV GGNNCC 4 cut(s) 242, 493, 647, 663
NmuCI GTSAC 1 cut(s) 521
NsiI ATGCAT 1 cut(s) 353
NspI RCATGY 2 cut(s) 351, 442
PagI TCATGA 1 cut(s) 561
PctI GAATGC 1 cut(s) 579
PfeI GAWTC 1 cut(s) 532
Ple19I CGATCG 1 cut(s) 767
PluTI GGCGCC 1 cut(s) 649
Psp124BI GAGCTC 2 cut(s) 124, 861
Psp6I CCWGG 1 cut(s) 674
PspEI GGTNACC 2 cut(s) 521, 550
PspFI CCCAGC 1 cut(s) 286
PspGI CCWGG 1 cut(s) 674
PspN4I GGNNCC 4 cut(s) 242, 493, 647, 663
PspPI GGNCC 1 cut(s) 140
PvuI CGATCG 1 cut(s) 767
RsaI GTAC 2 cut(s) 100, 694
RsaNI GTAC 2 cut(s) 99, 693
RseI CAYNNNNRTG 2 cut(s) 307, 566
SacI GAGCTC 2 cut(s) 124, 861
SaqAI TTAA 1 cut(s) 8
Sau3AI GATC 3 cut(s) 355, 746, 764
Sau96I GGNCC 1 cut(s) 140
ScrFI CCNGG 2 cut(s) 538, 676
SduI GDGCHC 2 cut(s) 124, 861
SexAI ACCWGGT 1 cut(s) 674
SfaNI GCATC 1 cut(s) 558
SfcI CTRYAG 1 cut(s) 681
SfoI GGCGCC 1 cut(s) 647
SmiMI CAYNNNNRTG 2 cut(s) 307, 566
SmlI CTYRAG 2 cut(s) 218, 572
SmoI CTYRAG 2 cut(s) 218, 572
Sse9I AATT 7 cut(s) 35, 268, 298, 317, 618, 815, 847
SsiI CCGC 1 cut(s) 187
SspDI GGCGCC 1 cut(s) 645
SspMI CTAG 1 cut(s) 443
SstI GAGCTC 2 cut(s) 124, 861
StyD4I CCNGG 2 cut(s) 536, 674
StyI CCWWGG 3 cut(s) 495, 527, 555
TaaI ACNGT 4 cut(s) 306, 399, 550, 669
TaqI TCGA 2 cut(s) 165, 767
TasI AATT 7 cut(s) 35, 268, 298, 317, 618, 815, 847
TfiI GAWTC 1 cut(s) 532
Tru1I TTAA 1 cut(s) 8
Tru9I TTAA 1 cut(s) 8
TscAI CASTG 1 cut(s) 378
TseFI GTSAC 1 cut(s) 521
Tsp45I GTSAC 1 cut(s) 521
TspDTI ATGAA 4 cut(s) 572, 578, 823, 828
TspGWI ACGGA 1 cut(s) 132
TspRI CASTG 1 cut(s) 378
XapI RAATTY 1 cut(s) 298
XceI RCATGY 2 cut(s) 351, 442
XcmI CCANNNNNNNNNTGG 1 cut(s) 672
XspI CTAG 1 cut(s) 443
Zsp2I ATGCAT 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.