RLG00000001652

Plasma membrane ATPase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
18749340 .. 18750688
1349 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001652

Sequence Viewer

Length: 321 bp
ATGGCGGATGAGAAGCCTGAAGTGCTTGACGCGGTGCTGAAGGAAACAGTTGATTTGGGGAAGCCTCCTGACTGGCAAGATTTTGCGGTTATTATTACTCTGTTGGTCATCAACTCCACCATTAGTTTCATCAAGGAAAATAATGCGGGTAATGCTGCAGCAGCTCTCATGGCTCGTCTTGCTCCTAAAGCCAAGGGGGAAACAAGCTTGCTGGGAGAGAACATTTCTTTGTCTGCATCAGGGAAAAACGGGTGCATACAGCATGCTATAAATGCCAAGAGCAGTTGCTATTCTCCATCACTTCCATATTCTCTGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

107

Amino Acids

11.16

Weight (kDa)

5.24

Isoelectric Point (pI)

23.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000545)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36571
pyrus_communis pycom02g01560 pycom08g10820 pycom09g05820 pycom13g21850 pycom14g16010
rosa_chinensis RchiOBHm_Chr2g0094861 RchiOBHm_Chr2g0124911 RchiOBHm_Chr2g0138581 RchiOBHm_Chr2g0160851 RchiOBHm_Chr4g0407411
rosa_laevigata RLG00000001652 RLG00000001872 RLG00000002037 RLG00000003076 RLG00000006419 RLG00000016771 RLG00000017383 RLG00000022851 RLG00000030563 RLG00000033869 RLG00000034176
rosa_multiflora Rmu_co8013424.1_g000001 Rmu_co8016716.1_g000001 Rmu_co8183472.1_g000001 Rmu_co8254047.1_g000001 Rmu_co8354891.1_g000001 Rmu_sc0000124.1_g000003 Rmu_sc0002132.1_g000027 Rmu_sc0003007.1_g000011 Rmu_sc0003221.1_g000096 Rmu_sc0003221.1_g000097 Rmu_sc0005119.1_g000004 Rmu_sc0008057.1_g000005 Rmu_sc0034532.1_g000001 Rmu_sc0036406.1_g000001 Rmu_ssc0000008.1_g000009
rosa_roxburghii Rroxscaffold_1G00030520 Rroxscaffold_2G00107360 Rroxscaffold_2G00153420 Rroxscaffold_5G00335750 Rroxscaffold_5G00351760 Rroxscaffold_5G00352080 Rroxscaffold_6G00419090
rosa_rugosa Rorug01G0341800 Rorug01G0341900 Rorug02G0180200 Rorug02G0180300 Rorug03G0186100 Rorug03G0186200 Rorug03G0284800 Rorug04G0104500 Rorug05G0246300 Rorug06G0108400 Rorug06G0471500 Rorug06G0510400
rosa_samantha Rh1AG159000 Rh1CG148200 Rh1CG189900 Rh2AG552800 Rh2BG473900 Rh2BG612100 Rh2BG612300 Rh2DG094500 Rh2DG482600 Rh3BG234000 Rh3CG320000 Rh4AG144200 Rh4BG127900 Rh4DG097300 Rh5AG128900 Rh5AG381200 Rh5BG363000 Rh5DG491900 Rh6AG048400 Rh6BG168100 Rh6CG005800 Rh6DG006000 Rh7AG255100 Rh7BG360600 Rh7CG271700 Rh7CG482300 Rh7DG451200
rosa_wichuraiana Rw4G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 32
AciI CCGC 4 cut(s) 5, 32, 86, 146
AcuI CTGAAG 2 cut(s) 39, 59
AluBI AGCT 2 cut(s) 164, 207
AluI AGCT 2 cut(s) 164, 207
ApeKI GCWGC 3 cut(s) 155, 158, 161
BbvI GCAGC 3 cut(s) 142, 170, 173
BccI CCATC 1 cut(s) 304
BfmI CTRYAG 1 cut(s) 156
BisI GCNGC 3 cut(s) 156, 159, 162
BlsI GCNGC 3 cut(s) 157, 160, 163
BmsI GCATC 1 cut(s) 245
BsaJI CCNNGG 1 cut(s) 192
Bse1I ACTGG 1 cut(s) 77
BseDI CCNNGG 1 cut(s) 192
BseGI GGATG 1 cut(s) 13
BseNI ACTGG 1 cut(s) 77
BseXI GCAGC 3 cut(s) 142, 170, 173
BseYI CCCAGC 1 cut(s) 211
Bsh1236I CGCG 1 cut(s) 32
BspACI CCGC 4 cut(s) 5, 32, 86, 146
BspFNI CGCG 1 cut(s) 32
BspMAI CTGCAG 1 cut(s) 160
BsrI ACTGG 1 cut(s) 77
BssECI CCNNGG 1 cut(s) 192
BssT1I CCWWGG 1 cut(s) 192
Bst4CI ACNGT 1 cut(s) 49
BstC8I GCNNGC 2 cut(s) 209, 264
BstF5I GGATG 1 cut(s) 13
BstFNI CGCG 1 cut(s) 32
BstMWI GCNNNNNNNGC 7 cut(s) 22, 152, 161, 170, 179, 188, 272
BstNSI RCATGY 1 cut(s) 266
BstSFI CTRYAG 1 cut(s) 156
BstUI CGCG 1 cut(s) 32
BstV1I GCAGC 3 cut(s) 142, 170, 173
BtsCI GGATG 1 cut(s) 13
Cac8I GCNNGC 2 cut(s) 209, 264
CseI GACGC 1 cut(s) 38
CviAII CATG 2 cut(s) 169, 263
CviJI RGCY 6 cut(s) 16, 64, 164, 173, 191, 207
CviKI_1 RGCY 6 cut(s) 16, 64, 164, 173, 191, 207
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 192
Eco57I CTGAAG 2 cut(s) 39, 59
EcoT14I CCWWGG 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 192
FaeI CATG 2 cut(s) 172, 266
FaiI YATR 5 cut(s) 170, 257, 264, 269, 307
FatI CATG 2 cut(s) 168, 262
FauI CCCGC 1 cut(s) 139
Fnu4HI GCNGC 3 cut(s) 156, 159, 162
FokI GGATG 1 cut(s) 20
Fsp4HI GCNGC 3 cut(s) 156, 159, 162
GluI GCNGC 3 cut(s) 156, 159, 162
GsaI CCCAGC 1 cut(s) 215
HgaI GACGC 1 cut(s) 38
Hin1II CATG 2 cut(s) 172, 266
HindIII AAGCTT 1 cut(s) 205
Hpy188III TCNNGA 1 cut(s) 68
HpyAV CCTTC 1 cut(s) 34
HpyCH4III ACNGT 1 cut(s) 49
HpyCH4V TGCA 3 cut(s) 158, 236, 255
HpyF10VI GCNNNNNNNGC 7 cut(s) 22, 152, 161, 170, 179, 188, 272
Hsp92II CATG 2 cut(s) 172, 266
LmnI GCTCC 1 cut(s) 187
LpnPI CCDG 6 cut(s) 30, 58, 81, 197, 225, 299
Lsp1109I GCAGC 3 cut(s) 142, 170, 173
LweI GCATC 1 cut(s) 245
MnlI CCTC 1 cut(s) 75
MvnI CGCG 1 cut(s) 32
MwoI GCNNNNNNNGC 7 cut(s) 22, 152, 161, 170, 179, 188, 272
NlaIII CATG 2 cut(s) 172, 266
NspI RCATGY 1 cut(s) 266
PaeI GCATGC 1 cut(s) 266
PkrI GCNGC 3 cut(s) 157, 160, 163
PspFI CCCAGC 1 cut(s) 211
PstI CTGCAG 1 cut(s) 160
SatI GCNGC 3 cut(s) 156, 159, 162
SetI ASST 2 cut(s) 166, 209
SfaNI GCATC 1 cut(s) 245
SfcI CTRYAG 1 cut(s) 156
SphI GCATGC 1 cut(s) 266
SsiI CCGC 4 cut(s) 5, 32, 86, 146
StyI CCWWGG 1 cut(s) 192
TaaI ACNGT 1 cut(s) 49
TseI GCWGC 3 cut(s) 155, 158, 161
TspDTI ATGAA 1 cut(s) 118
XceI RCATGY 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.