Rmu_sc0003007.1_g000011

plasma membrane ATPase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003007.1
OG0000545
Physical Location & Seq
Forward (+)
38289 .. 39240
952 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003007.1_g000011.1.cds

Sequence Viewer

Length: 312 bp
atggcggaggagaagcctgaagtgcttgacgcggtgctgaaggaaacaattgatttggggaagcctcctgactggcaagattttgtggttattattactctgctggtcatcaactccaccattagtttcatcaaggaaaataatgccggtaatgctgcagcaactctcatggctcgtcttgctcctaaagccaagccttatcagaggtctggaagcggtcgtaggcaacaacaatttgatatctcccccaatttcgatccggtgtctccgcccattactccctatctctatcattcaattctgggtaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

103

Amino Acids

11.39

Weight (kDa)

6.56

Isoelectric Point (pI)

45.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000545)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36571
pyrus_communis pycom02g01560 pycom08g10820 pycom09g05820 pycom13g21850 pycom14g16010
rosa_chinensis RchiOBHm_Chr2g0094861 RchiOBHm_Chr2g0124911 RchiOBHm_Chr2g0138581 RchiOBHm_Chr2g0160851 RchiOBHm_Chr4g0407411
rosa_laevigata RLG00000001652 RLG00000001872 RLG00000002037 RLG00000003076 RLG00000006419 RLG00000016771 RLG00000017383 RLG00000022851 RLG00000030563 RLG00000033869 RLG00000034176
rosa_multiflora Rmu_co8013424.1_g000001 Rmu_co8016716.1_g000001 Rmu_co8183472.1_g000001 Rmu_co8254047.1_g000001 Rmu_co8354891.1_g000001 Rmu_sc0000124.1_g000003 Rmu_sc0002132.1_g000027 Rmu_sc0003007.1_g000011 Rmu_sc0003221.1_g000096 Rmu_sc0003221.1_g000097 Rmu_sc0005119.1_g000004 Rmu_sc0008057.1_g000005 Rmu_sc0034532.1_g000001 Rmu_sc0036406.1_g000001 Rmu_ssc0000008.1_g000009
rosa_roxburghii Rroxscaffold_1G00030520 Rroxscaffold_2G00107360 Rroxscaffold_2G00153420 Rroxscaffold_5G00335750 Rroxscaffold_5G00351760 Rroxscaffold_5G00352080 Rroxscaffold_6G00419090
rosa_rugosa Rorug01G0341800 Rorug01G0341900 Rorug02G0180200 Rorug02G0180300 Rorug03G0186100 Rorug03G0186200 Rorug03G0284800 Rorug04G0104500 Rorug05G0246300 Rorug06G0108400 Rorug06G0471500 Rorug06G0510400
rosa_samantha Rh1AG159000 Rh1CG148200 Rh1CG189900 Rh2AG552800 Rh2BG473900 Rh2BG612100 Rh2BG612300 Rh2DG094500 Rh2DG482600 Rh3BG234000 Rh3CG320000 Rh4AG144200 Rh4BG127900 Rh4DG097300 Rh5AG128900 Rh5AG381200 Rh5BG363000 Rh5DG491900 Rh6AG048400 Rh6BG168100 Rh6CG005800 Rh6DG006000 Rh7AG255100 Rh7BG360600 Rh7CG271700 Rh7CG482300 Rh7DG451200
rosa_wichuraiana Rw4G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 32
AciI CCGC 4 cut(s) 5, 32, 216, 269
AclWI GGATC 1 cut(s) 251
AcuI CTGAAG 2 cut(s) 39, 59
AgsI TTSAA 1 cut(s) 297
Alw26I GTCTC 1 cut(s) 270
AlwI GGATC 1 cut(s) 251
ApeKI GCWGC 2 cut(s) 155, 158
BbvI GCAGC 2 cut(s) 142, 170
BcoDI GTCTC 1 cut(s) 270
BfmI CTRYAG 1 cut(s) 156
BisI GCNGC 2 cut(s) 156, 159
BlsI GCNGC 2 cut(s) 157, 160
BsaWI WCCGGW 1 cut(s) 259
Bse118I RCCGGY 1 cut(s) 146
Bse1I ACTGG 1 cut(s) 77
BseNI ACTGG 1 cut(s) 77
BseRI GAGGAG 1 cut(s) 23
BseXI GCAGC 2 cut(s) 142, 170
Bsh1236I CGCG 1 cut(s) 32
Bsh1285I CGRYCG 1 cut(s) 220
BsiEI CGRYCG 1 cut(s) 220
BsiSI CCGG 2 cut(s) 147, 260
BsmAI GTCTC 1 cut(s) 270
Bsp143I GATC 1 cut(s) 256
BspACI CCGC 4 cut(s) 5, 32, 216, 269
BspFNI CGCG 1 cut(s) 32
BspMAI CTGCAG 1 cut(s) 160
BspPI GGATC 1 cut(s) 251
BsrFI RCCGGY 1 cut(s) 146
BsrI ACTGG 1 cut(s) 77
BssAI RCCGGY 1 cut(s) 146
BssMI GATC 1 cut(s) 256
BstFNI CGCG 1 cut(s) 32
BstKTI GATC 1 cut(s) 259
BstMAI GTCTC 1 cut(s) 270
BstMBI GATC 1 cut(s) 256
BstMCI CGRYCG 1 cut(s) 220
BstMWI GCNNNNNNNGC 4 cut(s) 22, 152, 179, 188
BstSFI CTRYAG 1 cut(s) 156
BstUI CGCG 1 cut(s) 32
BstV1I GCAGC 2 cut(s) 142, 170
Cfr10I RCCGGY 1 cut(s) 146
CseI GACGC 1 cut(s) 38
CviAII CATG 1 cut(s) 169
CviJI RGCY 5 cut(s) 16, 64, 173, 191, 196
CviKI_1 RGCY 5 cut(s) 16, 64, 173, 191, 196
DpnI GATC 1 cut(s) 258
DpnII GATC 1 cut(s) 256
EciI GGCGGA 2 cut(s) 20, 258
Eco32I GATATC 1 cut(s) 241
Eco57I CTGAAG 2 cut(s) 39, 59
EcoRV GATATC 1 cut(s) 241
FaeI CATG 1 cut(s) 172
FaiI YATR 1 cut(s) 170
FatI CATG 1 cut(s) 168
Fnu4HI GCNGC 2 cut(s) 156, 159
Fsp4HI GCNGC 2 cut(s) 156, 159
GluI GCNGC 2 cut(s) 156, 159
HapII CCGG 2 cut(s) 147, 260
HgaI GACGC 1 cut(s) 38
Hin1II CATG 1 cut(s) 172
HpaII CCGG 2 cut(s) 147, 260
Hpy188I TCNGA 1 cut(s) 204
Hpy188III TCNNGA 2 cut(s) 68, 210
HpyAV CCTTC 1 cut(s) 34
HpyCH4V TGCA 1 cut(s) 158
HpyF10VI GCNNNNNNNGC 4 cut(s) 22, 152, 179, 188
Hsp92II CATG 1 cut(s) 172
Kzo9I GATC 1 cut(s) 256
LmnI GCTCC 1 cut(s) 187
LpnPI CCDG 8 cut(s) 30, 58, 81, 89, 160, 195, 273, 287
Lsp1109I GCAGC 2 cut(s) 142, 170
MalI GATC 1 cut(s) 258
MboI GATC 1 cut(s) 256
MfeI CAATTG 1 cut(s) 48
MluCI AATT 4 cut(s) 48, 233, 250, 297
MnlI CCTC 2 cut(s) 75, 198
MspI CCGG 2 cut(s) 147, 260
MunI CAATTG 1 cut(s) 48
MvnI CGCG 1 cut(s) 32
MwoI GCNNNNNNNGC 4 cut(s) 22, 152, 179, 188
NdeII GATC 1 cut(s) 256
NlaIII CATG 1 cut(s) 172
PkrI GCNGC 2 cut(s) 157, 160
PstI CTGCAG 1 cut(s) 160
SatI GCNGC 2 cut(s) 156, 159
Sau3AI GATC 1 cut(s) 256
SetI ASST 1 cut(s) 209
SfcI CTRYAG 1 cut(s) 156
Sse9I AATT 4 cut(s) 48, 233, 250, 297
SsiI CCGC 4 cut(s) 5, 32, 216, 269
TaqI TCGA 1 cut(s) 255
TasI AATT 4 cut(s) 48, 233, 250, 297
TseI GCWGC 2 cut(s) 155, 158
TspDTI ATGAA 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.