Rmu_sc0036406.1_g000001

Plasma membrane ATPase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0036406.1
OG0000545
Physical Location & Seq
Forward (+)
1 .. 2027
2027 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0036406.1_g000001.1.cds

Sequence Viewer

Length: 1236 bp
gaacggattccaattgaggaagtctttgagcagttgaaatgtacaagggaaggtcttacctccgaggagggtcagaacaggctccaagtctttggaccaaacaagttagaggagaaaaaggaaaacaagctactgaagtttttggggttcatgtggaatcccttgtcatgggtcatggaagctgctgctgtgatggctattgccctggcaaatggtggtggaaggcctccggattggcaggattttgtaggaattatggtcctgctggtcgttaactctaccatcagttttattgaggaaaacaatgctggcaatgcggctgctgcacttatggctggtcttgctcctaagactaaggtcctcagagatggtcgatggacaaagcaagaggcttcaattttggttccaggaaatataatcagcattaagttgggagatatagtgcctgctgatgctcgccttcttgagggtgatcctctgaagattgaccagtctgccctaaccggcgagtcccttgctgtcactaaaaatcctggagatgaagtgttttctggctcaacatgtaaacagggtgaaattgaagcagtggtcattgcaactggtgtgcacaccttctttggtaaagctgcacatcttgtggacagcaccaacaatgttgggcattttcagcaagttctcacagcaattggaaacttctgcatttgttcaattggtgtgggaatacttattgaaattgttgtcatgtacccaattcagaagcgcaagtacagggatgggattgataatttgctggttctcttgattggtggaatcccaattgctatgcctactgttttatctgtcacgatggctataggttctcacaggctttctcagcaaggtgctattactaagagaatgactgccattgaggaaatggctggcatggatgtactgtgcagtgataagactgggaccttgaccctgaacaagctgacagttgatagaaatctgattgaagtgttccccaagggtgtggagaaagagcatgttatccttcttgcagcaagggcttctagaactgaaaatcaggatgctattgatgctgccatagtaaatatgcttgctgatccaaaggaggcgcgagctggtgtcagagaaatccatttccttccattcaaccctgttgacaagaggactgctttgacctacattgattctgatgggaattggcatcgatctagcaaaggtgcccct
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

412

Amino Acids

44.64

Weight (kDa)

5.77

Isoelectric Point (pI)

38.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000545)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36571
pyrus_communis pycom02g01560 pycom08g10820 pycom09g05820 pycom13g21850 pycom14g16010
rosa_chinensis RchiOBHm_Chr2g0094861 RchiOBHm_Chr2g0124911 RchiOBHm_Chr2g0138581 RchiOBHm_Chr2g0160851 RchiOBHm_Chr4g0407411
rosa_laevigata RLG00000001652 RLG00000001872 RLG00000002037 RLG00000003076 RLG00000006419 RLG00000016771 RLG00000017383 RLG00000022851 RLG00000030563 RLG00000033869 RLG00000034176
rosa_multiflora Rmu_co8013424.1_g000001 Rmu_co8016716.1_g000001 Rmu_co8183472.1_g000001 Rmu_co8254047.1_g000001 Rmu_co8354891.1_g000001 Rmu_sc0000124.1_g000003 Rmu_sc0002132.1_g000027 Rmu_sc0003007.1_g000011 Rmu_sc0003221.1_g000096 Rmu_sc0003221.1_g000097 Rmu_sc0005119.1_g000004 Rmu_sc0008057.1_g000005 Rmu_sc0034532.1_g000001 Rmu_sc0036406.1_g000001 Rmu_ssc0000008.1_g000009
rosa_roxburghii Rroxscaffold_1G00030520 Rroxscaffold_2G00107360 Rroxscaffold_2G00153420 Rroxscaffold_5G00335750 Rroxscaffold_5G00351760 Rroxscaffold_5G00352080 Rroxscaffold_6G00419090
rosa_rugosa Rorug01G0341800 Rorug01G0341900 Rorug02G0180200 Rorug02G0180300 Rorug03G0186100 Rorug03G0186200 Rorug03G0284800 Rorug04G0104500 Rorug05G0246300 Rorug06G0108400 Rorug06G0471500 Rorug06G0510400
rosa_samantha Rh1AG159000 Rh1CG148200 Rh1CG189900 Rh2AG552800 Rh2BG473900 Rh2BG612100 Rh2BG612300 Rh2DG094500 Rh2DG482600 Rh3BG234000 Rh3CG320000 Rh4AG144200 Rh4BG127900 Rh4DG097300 Rh5AG128900 Rh5AG381200 Rh5BG363000 Rh5DG491900 Rh6AG048400 Rh6BG168100 Rh6CG005800 Rh6DG006000 Rh7AG255100 Rh7BG360600 Rh7CG271700 Rh7CG482300 Rh7DG451200
rosa_wichuraiana Rw4G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1229
AccII CGCG 1 cut(s) 1123
AccIII TCCGGA 1 cut(s) 229
AciI CCGC 1 cut(s) 317
AclWI GGATC 2 cut(s) 467, 1103
AcuI CTGAAG 2 cut(s) 155, 500
AfaI GTAC 4 cut(s) 43, 746, 767, 933
AfiI CCNNNNNNNGG 2 cut(s) 168, 466
AflIII ACRYGT 1 cut(s) 560
AgsI TTSAA 7 cut(s) 37, 396, 581, 708, 731, 998, 1159
AjnI CCWGG 3 cut(s) 204, 406, 532
AluBI AGCT 5 cut(s) 130, 182, 626, 973, 1127
AluI AGCT 5 cut(s) 130, 182, 626, 973, 1127
Alw21I GWGCWC 1 cut(s) 609
Alw44I GTGCAC 1 cut(s) 605
AlwI GGATC 2 cut(s) 467, 1103
Aor13HI TCCGGA 1 cut(s) 229
AoxI GGCC 1 cut(s) 224
ApaLI GTGCAC 1 cut(s) 605
ApeKI GCWGC 7 cut(s) 182, 185, 320, 323, 626, 1043, 1085
Asp700I GAANNNNTTC 1 cut(s) 6
AspLEI GCGC 2 cut(s) 762, 1123
AspS9I GGNCC 4 cut(s) 95, 259, 358, 954
AsuHPI GGTGA 2 cut(s) 482, 584
AvaII GGWCC 4 cut(s) 95, 259, 358, 954
BaeGI GKGCMC 2 cut(s) 609, 1234
BanI GGYRCC 1 cut(s) 1229
BarI GAAGNNNNNNTAC 2 cut(s) 749, 781
Bbv12I GWGCWC 1 cut(s) 609
BbvI GCAGC 7 cut(s) 169, 172, 307, 310, 613, 1055, 1072
BccI CCATC 7 cut(s) 187, 290, 362, 369, 767, 841, 1196
BcgI CGANNNNNNTGC 2 cut(s) 497, 531
BciT130I CCWGG 3 cut(s) 206, 408, 534
BfaI CTAG 2 cut(s) 1056, 1221
BfmI CTRYAG 1 cut(s) 852
BisI GCNGC 8 cut(s) 183, 186, 318, 321, 324, 627, 1044, 1086
BlsI GCNGC 8 cut(s) 184, 187, 319, 322, 325, 628, 1045, 1087
Bme1390I CCNGG 3 cut(s) 206, 408, 534
Bme18I GGWCC 4 cut(s) 95, 259, 358, 954
BmgT120I GGNCC 4 cut(s) 95, 259, 358, 954
BmiI GGNNCC 4 cut(s) 83, 405, 955, 1231
BmrFI CCNGG 3 cut(s) 206, 408, 534
BmrI ACTGGG 1 cut(s) 960
BmsI GCATC 4 cut(s) 442, 1063, 1072, 1222
BmuI ACTGGG 1 cut(s) 960
BoxI GACNNNNGTC 1 cut(s) 356
BpmI CTGGAG 1 cut(s) 555
BpuEI CTTGAG 1 cut(s) 485
Bsa29I ATCGAT 1 cut(s) 1216
BsaBI GATNNNNATC 1 cut(s) 987
BsaJI CCNNGG 3 cut(s) 63, 204, 1008
BsaWI WCCGGW 1 cut(s) 229
BsaXI ACNNNNNCTCC 4 cut(s) 426, 456, 528, 558
Bsc4I CCNNNNNNNGG 2 cut(s) 168, 466
Bse118I RCCGGY 1 cut(s) 503
Bse1I ACTGG 3 cut(s) 490, 604, 955
Bse3DI GCAATG 2 cut(s) 319, 591
Bse8I GATNNNNATC 1 cut(s) 987
BseAI TCCGGA 1 cut(s) 229
BseBI CCWGG 3 cut(s) 206, 408, 534
BseCI ATCGAT 1 cut(s) 1216
BseDI CCNNGG 3 cut(s) 63, 204, 1008
BseGI GGATG 3 cut(s) 778, 934, 1078
BseJI GATNNNNATC 1 cut(s) 987
BseLI CCNNNNNNNGG 2 cut(s) 168, 466
BseMI GCAATG 2 cut(s) 319, 591
BseMII CTCAG 2 cut(s) 376, 887
BseNI ACTGG 3 cut(s) 490, 604, 955
BseRI GAGGAG 2 cut(s) 80, 125
BseSI GKGCMC 2 cut(s) 609, 1234
BseXI GCAGC 7 cut(s) 169, 172, 307, 310, 613, 1055, 1072
BsgI GTGCAG 3 cut(s) 309, 612, 958
Bsh1236I CGCG 1 cut(s) 1123
BshFI GGCC 1 cut(s) 226
BshNI GGYRCC 1 cut(s) 1229
BshVI ATCGAT 1 cut(s) 1216
BsiHKAI GWGCWC 1 cut(s) 609
BsiSI CCGG 2 cut(s) 230, 504
BslFI GGGAC 2 cut(s) 496, 967
BslI CCNNNNNNNGG 2 cut(s) 168, 466
BsmFI GGGAC 2 cut(s) 496, 967
BsnI GGCC 1 cut(s) 226
Bsp1286I GDGCHC 2 cut(s) 609, 1234
Bsp13I TCCGGA 1 cut(s) 229
Bsp1407I TGTACA 1 cut(s) 41
Bsp143I GATC 3 cut(s) 472, 1108, 1217
BspACI CCGC 1 cut(s) 317
BspANI GGCC 1 cut(s) 226
BspCNI CTCAG 2 cut(s) 375, 886
BspDI ATCGAT 1 cut(s) 1216
BspEI TCCGGA 1 cut(s) 229
BspFNI CGCG 1 cut(s) 1123
BspLI GGNNCC 4 cut(s) 83, 405, 955, 1231
BspPI GGATC 2 cut(s) 467, 1103
BspT107I GGYRCC 1 cut(s) 1229
BsrDI GCAATG 2 cut(s) 319, 591
BsrFI RCCGGY 1 cut(s) 503
BsrGI TGTACA 1 cut(s) 41
BsrI ACTGG 3 cut(s) 490, 604, 955
BssAI RCCGGY 1 cut(s) 503
BssECI CCNNGG 3 cut(s) 63, 204, 1008
BssMI GATC 3 cut(s) 472, 1108, 1217
BssT1I CCWWGG 1 cut(s) 1008
Bst2UI CCWGG 3 cut(s) 206, 408, 534
Bst4CI ACNGT 3 cut(s) 832, 936, 979
BstAUI TGTACA 1 cut(s) 41
BstC8I GCNNGC 6 cut(s) 310, 447, 457, 922, 1104, 1125
BstDEI CTNAG 5 cut(s) 348, 354, 362, 873, 891
BstENI CCTNNNNNAGG 1 cut(s) 464
BstF5I GGATG 3 cut(s) 778, 934, 1078
BstFNI CGCG 1 cut(s) 1123
BstHHI GCGC 2 cut(s) 762, 1123
BstKTI GATC 3 cut(s) 475, 1111, 1220
BstMBI GATC 3 cut(s) 472, 1108, 1217
BstMWI GCNNNNNNNGC 9 cut(s) 194, 314, 323, 332, 341, 667, 874, 1049, 1082
BstNI CCWGG 3 cut(s) 206, 408, 534
BstNSI RCATGY 2 cut(s) 564, 1031
BstPAI GACNNNNGTC 1 cut(s) 356
BstSCI CCNGG 3 cut(s) 204, 406, 532
BstSFI CTRYAG 1 cut(s) 852
BstSLI GKGCMC 2 cut(s) 609, 1234
BstUI CGCG 1 cut(s) 1123
BstV1I GCAGC 7 cut(s) 169, 172, 307, 310, 613, 1055, 1072
BstXI CCANNNNNNTGG 2 cut(s) 92, 1015
Bsu15I ATCGAT 1 cut(s) 1216
BsuRI GGCC 1 cut(s) 226
BsuTUI ATCGAT 1 cut(s) 1216
BtsCI GGATG 3 cut(s) 778, 934, 1078
BtsI GCAGTG 2 cut(s) 591, 946
BtsIMutI CAGTG 2 cut(s) 591, 946
Cac8I GCNNGC 6 cut(s) 310, 447, 457, 922, 1104, 1125
CfoI GCGC 2 cut(s) 762, 1123
Cfr10I RCCGGY 1 cut(s) 503
Cfr13I GGNCC 4 cut(s) 95, 259, 358, 954
ClaI ATCGAT 1 cut(s) 1216
Csp6I GTAC 4 cut(s) 42, 745, 766, 932
CspCI CAANNNNNGTGG 2 cut(s) 696, 731
CviAII CATG 7 cut(s) 151, 168, 175, 561, 742, 925, 1028
CviQI GTAC 4 cut(s) 42, 745, 766, 932
DdeI CTNAG 5 cut(s) 348, 354, 362, 873, 891
DpnI GATC 3 cut(s) 474, 1110, 1219
DpnII GATC 3 cut(s) 472, 1108, 1217
Eco130I CCWWGG 1 cut(s) 1008
Eco147I AGGCCT 1 cut(s) 226
Eco47I GGWCC 4 cut(s) 95, 259, 358, 954
Eco57I CTGAAG 2 cut(s) 155, 500
EcoNI CCTNNNNNAGG 1 cut(s) 464
EcoO109I RGGNCCY 2 cut(s) 358, 954
EcoRII CCWGG 3 cut(s) 204, 406, 532
EcoT14I CCWWGG 1 cut(s) 1008
ErhI CCWWGG 1 cut(s) 1008
FaeI CATG 7 cut(s) 154, 171, 178, 564, 745, 928, 1031
FaqI GGGAC 2 cut(s) 496, 967
FatI CATG 7 cut(s) 150, 167, 174, 560, 741, 924, 1027
Fnu4HI GCNGC 8 cut(s) 183, 186, 318, 321, 324, 627, 1044, 1086
FokI GGATG 3 cut(s) 785, 941, 1085
Fsp4HI GCNGC 8 cut(s) 183, 186, 318, 321, 324, 627, 1044, 1086
FspBI CTAG 2 cut(s) 1056, 1221
GlaI GCGC 2 cut(s) 761, 1122
GluI GCNGC 8 cut(s) 183, 186, 318, 321, 324, 627, 1044, 1086
GsuI CTGGAG 1 cut(s) 555
HaeIII GGCC 1 cut(s) 226
HapII CCGG 2 cut(s) 230, 504
HhaI GCGC 2 cut(s) 762, 1123
Hin1II CATG 7 cut(s) 154, 171, 178, 564, 745, 928, 1031
Hin6I GCGC 2 cut(s) 760, 1121
HinP1I GCGC 2 cut(s) 760, 1121
HincII GTYRAC 2 cut(s) 274, 1168
HindII GTYRAC 2 cut(s) 274, 1168
HinfI GANTC 5 cut(s) 7, 157, 509, 810, 1196
HpaI GTTAAC 1 cut(s) 274
HpaII CCGG 2 cut(s) 230, 504
HphI GGTGA 2 cut(s) 482, 584
Hpy166II GTNNAC 5 cut(s) 274, 566, 607, 640, 1168
Hpy188I TCNGA 8 cut(s) 64, 75, 365, 480, 756, 993, 1136, 1201
Hpy188III TCNNGA 6 cut(s) 230, 464, 799, 844, 1056, 1070
Hpy8I GTNNAC 5 cut(s) 274, 566, 607, 640, 1168
HpyAV CCTTC 6 cut(s) 44, 216, 470, 622, 1046, 1160
HpyCH4III ACNGT 3 cut(s) 832, 936, 979
HpyCH4V TGCA 7 cut(s) 326, 596, 607, 629, 699, 939, 1043
HpyF10VI GCNNNNNNNGC 9 cut(s) 194, 314, 323, 332, 341, 667, 874, 1049, 1082
HpyF3I CTNAG 5 cut(s) 348, 354, 362, 873, 891
Hsp92II CATG 7 cut(s) 154, 171, 178, 564, 745, 928, 1031
HspAI GCGC 2 cut(s) 760, 1121
Kpn2I TCCGGA 1 cut(s) 229
KspAI GTTAAC 1 cut(s) 274
Kzo9I GATC 3 cut(s) 472, 1108, 1217
LmnI GCTCC 2 cut(s) 87, 349
Lsp1109I GCAGC 7 cut(s) 169, 172, 307, 310, 613, 1055, 1072
LweI GCATC 4 cut(s) 442, 1063, 1072, 1222
MaeI CTAG 2 cut(s) 1056, 1221
MaeIII GTNAC 2 cut(s) 520, 841
MalI GATC 3 cut(s) 474, 1110, 1219
MboI GATC 3 cut(s) 472, 1108, 1217
MboII GAAGA 1 cut(s) 493
MfeI CAATTG 4 cut(s) 12, 684, 708, 816
MhlI GDGCHC 2 cut(s) 609, 1234
MlyI GAGTC 1 cut(s) 518
MroI TCCGGA 1 cut(s) 229
MroXI GAANNNNTTC 1 cut(s) 6
MseI TTAA 2 cut(s) 273, 426
MspI CCGG 2 cut(s) 230, 504
MspR9I CCNGG 3 cut(s) 206, 408, 534
MunI CAATTG 4 cut(s) 12, 684, 708, 816
MvaI CCWGG 3 cut(s) 206, 408, 534
MvnI CGCG 1 cut(s) 1123
MwoI GCNNNNNNNGC 9 cut(s) 194, 314, 323, 332, 341, 667, 874, 1049, 1082
NdeII GATC 3 cut(s) 472, 1108, 1217
NlaIII CATG 7 cut(s) 154, 171, 178, 564, 745, 928, 1031
NlaIV GGNNCC 4 cut(s) 83, 405, 955, 1231
NmuCI GTSAC 2 cut(s) 520, 841
NspI RCATGY 2 cut(s) 564, 1031
PceI AGGCCT 1 cut(s) 226
PciI ACATGT 1 cut(s) 560
PdmI GAANNNNTTC 1 cut(s) 6
PfeI GAWTC 4 cut(s) 7, 157, 810, 1196
PfoI TCCNGGA 2 cut(s) 406, 532
PkrI GCNGC 8 cut(s) 184, 187, 319, 322, 325, 628, 1045, 1087
PleI GAGTC 1 cut(s) 517
PpsI GAGTC 1 cut(s) 517
PpuMI RGGWCCY 2 cut(s) 358, 954
PscI ACATGT 1 cut(s) 560
PshAI GACNNNNGTC 1 cut(s) 356
Psp5II RGGWCCY 2 cut(s) 358, 954
Psp6I CCWGG 3 cut(s) 204, 406, 532
PspGI CCWGG 3 cut(s) 204, 406, 532
PspN4I GGNNCC 4 cut(s) 83, 405, 955, 1231
PspPI GGNCC 4 cut(s) 95, 259, 358, 954
PspPPI RGGWCCY 2 cut(s) 358, 954
RsaI GTAC 4 cut(s) 43, 746, 767, 933
RsaNI GTAC 4 cut(s) 42, 745, 766, 932
SaqAI TTAA 2 cut(s) 273, 426
SatI GCNGC 8 cut(s) 183, 186, 318, 321, 324, 627, 1044, 1086
Sau3AI GATC 3 cut(s) 472, 1108, 1217
Sau96I GGNCC 4 cut(s) 95, 259, 358, 954
SchI GAGTC 1 cut(s) 518
ScrFI CCNGG 3 cut(s) 206, 408, 534
SduI GDGCHC 2 cut(s) 609, 1234
SfaNI GCATC 4 cut(s) 442, 1063, 1072, 1222
SfcI CTRYAG 1 cut(s) 852
SinI GGWCC 4 cut(s) 95, 259, 358, 954
SmlI CTYRAG 1 cut(s) 464
SmoI CTYRAG 1 cut(s) 464
SseBI AGGCCT 1 cut(s) 226
SsiI CCGC 1 cut(s) 317
SspMI CTAG 2 cut(s) 1056, 1221
StuI AGGCCT 1 cut(s) 226
StyD4I CCNGG 3 cut(s) 204, 406, 532
StyI CCWWGG 1 cut(s) 1008
TaaI ACNGT 3 cut(s) 832, 936, 979
TaqI TCGA 2 cut(s) 373, 1216
TatI WGTACW 3 cut(s) 41, 765, 931
TauI GCSGC 1 cut(s) 320
TfiI GAWTC 4 cut(s) 7, 157, 810, 1196
Tru1I TTAA 2 cut(s) 273, 426
Tru9I TTAA 2 cut(s) 273, 426
TscAI CASTG 2 cut(s) 591, 946
TseFI GTSAC 2 cut(s) 520, 841
TseI GCWGC 7 cut(s) 182, 185, 320, 323, 626, 1043, 1085
Tsp45I GTSAC 2 cut(s) 520, 841
TspDTI ATGAA 2 cut(s) 139, 555
TspGWI ACGGA 1 cut(s) 19
TspRI CASTG 2 cut(s) 591, 946
VneI GTGCAC 1 cut(s) 605
VpaK11BI GGWCC 4 cut(s) 95, 259, 358, 954
XagI CCTNNNNNAGG 1 cut(s) 464
XbaI TCTAGA 1 cut(s) 1055
XceI RCATGY 2 cut(s) 564, 1031
XcmI CCANNNNNNNNNTGG 1 cut(s) 913
XmnI GAANNNNTTC 1 cut(s) 6
XspI CTAG 2 cut(s) 1056, 1221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.