Rh3BG234000

ATPase 11, plasma

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000545
Physical Location & Seq
Forward (+)
21844187 .. 21860505
16319 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG234000.1

Sequence Viewer

Length: 645 bp
ATGGCGGACGAGAAGCCTGAAGTGCTTGACGCGGTGCTGAAGGAAACAGTTGATTTGGAAAACATACCCATTGAGGAGGTGCTTGAGAATATGAGATGTAGCAAAGAGGGTCTCAGCAGTGAGGCTGTTGAGGAAAGATTAGCCATTTTTGGGCATAACAAGCTTGAGGAAAAGCAGGGAAAGCCTCCTAACTGGCAAGATTTTGCGGTTATTATTACTCTGCTGGTCATCAACTCCACCATTAGTTTCATCAAGGAAAATAATGCGGGTAATGCTGCAGCGGCTTTCATGGCTCGTCTTGCTCCTAAAGCCAAGAATCTAATCCCCAAAAAGAGGGATGAATATTTACACAGATTGATGAGTCTCCCAAATCAGGTTAAATATGAATACCACTTTGCCTGGGGATATCGATTTGTTGCTTCAGCTGAAGTGATGAAGTCCTTAAATATTCCCAAGGGTACTCGCCGAGTACTTTTCAGGACATTAAATACTGATAGGGGAGAGCTGGATTACCTTGTTGTTGACATGCCCCCAGGAGCTGTATTGGATTTTCAAGTAGTTCCATTGACTACTGTTGTTATTGTTACTACACCTCAAAAGCTACCGTTTATTGATGTCGCAAAAGGAGCTCGCATTATAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

214

Amino Acids

24.08

Weight (kDa)

6.34

Isoelectric Point (pI)

29.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cation_ATPase_N PF00690 21 - 63 4.6e-09 Cation transporter/ATPase, N-terminus
ParA PF10609 163 - 212 1.9e-09 NUBPL iron-transfer P-loop NTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000545)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36571
pyrus_communis pycom02g01560 pycom08g10820 pycom09g05820 pycom13g21850 pycom14g16010
rosa_chinensis RchiOBHm_Chr2g0094861 RchiOBHm_Chr2g0124911 RchiOBHm_Chr2g0138581 RchiOBHm_Chr2g0160851 RchiOBHm_Chr4g0407411
rosa_laevigata RLG00000001652 RLG00000001872 RLG00000002037 RLG00000003076 RLG00000006419 RLG00000016771 RLG00000017383 RLG00000022851 RLG00000030563 RLG00000033869 RLG00000034176
rosa_multiflora Rmu_co8013424.1_g000001 Rmu_co8016716.1_g000001 Rmu_co8183472.1_g000001 Rmu_co8254047.1_g000001 Rmu_co8354891.1_g000001 Rmu_sc0000124.1_g000003 Rmu_sc0002132.1_g000027 Rmu_sc0003007.1_g000011 Rmu_sc0003221.1_g000096 Rmu_sc0003221.1_g000097 Rmu_sc0005119.1_g000004 Rmu_sc0008057.1_g000005 Rmu_sc0034532.1_g000001 Rmu_sc0036406.1_g000001 Rmu_ssc0000008.1_g000009
rosa_roxburghii Rroxscaffold_1G00030520 Rroxscaffold_2G00107360 Rroxscaffold_2G00153420 Rroxscaffold_5G00335750 Rroxscaffold_5G00351760 Rroxscaffold_5G00352080 Rroxscaffold_6G00419090
rosa_rugosa Rorug01G0341800 Rorug01G0341900 Rorug02G0180200 Rorug02G0180300 Rorug03G0186100 Rorug03G0186200 Rorug03G0284800 Rorug04G0104500 Rorug05G0246300 Rorug06G0108400 Rorug06G0471500 Rorug06G0510400
rosa_samantha Rh1AG159000 Rh1CG148200 Rh1CG189900 Rh2AG552800 Rh2BG473900 Rh2BG612100 Rh2BG612300 Rh2DG094500 Rh2DG482600 Rh3BG234000 Rh3CG320000 Rh4AG144200 Rh4BG127900 Rh4DG097300 Rh5AG128900 Rh5AG381200 Rh5BG363000 Rh5DG491900 Rh6AG048400 Rh6BG168100 Rh6CG005800 Rh6DG006000 Rh7AG255100 Rh7BG360600 Rh7CG271700 Rh7CG482300 Rh7DG451200
rosa_wichuraiana Rw4G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 32
AciI CCGC 5 cut(s) 5, 32, 206, 266, 281
AcuI CTGAAG 4 cut(s) 39, 59, 405, 447
AfaI GTAC 2 cut(s) 460, 471
AfiI CCNNNNNNNGG 3 cut(s) 150, 333, 373
AgsI TTSAA 1 cut(s) 554
AjnI CCWGG 2 cut(s) 398, 532
AluBI AGCT 6 cut(s) 163, 425, 505, 539, 601, 629
AluI AGCT 6 cut(s) 163, 425, 505, 539, 601, 629
Alw21I GWGCWC 1 cut(s) 631
Alw26I GTCTC 2 cut(s) 116, 368
AlwNI CAGNNNCTG 1 cut(s) 539
ApeKI GCWGC 2 cut(s) 275, 278
BanII GRGCYC 1 cut(s) 631
Bbv12I GWGCWC 1 cut(s) 631
BbvI GCAGC 2 cut(s) 262, 290
BciT130I CCWGG 2 cut(s) 400, 534
BcoDI GTCTC 2 cut(s) 116, 368
BfmI CTRYAG 1 cut(s) 276
BisI GCNGC 3 cut(s) 276, 279, 282
BlsI GCNGC 3 cut(s) 277, 280, 283
BmcAI AGTACT 1 cut(s) 471
Bme1390I CCNGG 2 cut(s) 400, 534
BmrFI CCNGG 2 cut(s) 400, 534
BpuEI CTTGAG 2 cut(s) 104, 185
Bsa29I ATCGAT 1 cut(s) 409
BsaI GGTCTC 1 cut(s) 116
BsaJI CCNNGG 3 cut(s) 399, 453, 532
Bsc4I CCNNNNNNNGG 3 cut(s) 150, 333, 373
Bse1I ACTGG 1 cut(s) 197
BseBI CCWGG 2 cut(s) 400, 534
BseCI ATCGAT 1 cut(s) 409
BseDI CCNNGG 3 cut(s) 399, 453, 532
BseGI GGATG 1 cut(s) 343
BseLI CCNNNNNNNGG 3 cut(s) 150, 333, 373
BseMII CTCAG 1 cut(s) 127
BseNI ACTGG 1 cut(s) 197
BseRI GAGGAG 1 cut(s) 89
BseXI GCAGC 2 cut(s) 262, 290
Bsh1236I CGCG 1 cut(s) 32
BshVI ATCGAT 1 cut(s) 409
BsiHKAI GWGCWC 1 cut(s) 631
BslI CCNNNNNNNGG 3 cut(s) 150, 333, 373
BsmAI GTCTC 2 cut(s) 116, 368
Bso31I GGTCTC 1 cut(s) 116
Bsp1286I GDGCHC 1 cut(s) 631
BspACI CCGC 5 cut(s) 5, 32, 206, 266, 281
BspCNI CTCAG 1 cut(s) 126
BspDI ATCGAT 1 cut(s) 409
BspFNI CGCG 1 cut(s) 32
BspMAI CTGCAG 1 cut(s) 280
BspTNI GGTCTC 1 cut(s) 116
BsrI ACTGG 1 cut(s) 197
BssECI CCNNGG 3 cut(s) 399, 453, 532
BssT1I CCWWGG 1 cut(s) 453
Bst2UI CCWGG 2 cut(s) 400, 534
Bst4CI ACNGT 3 cut(s) 49, 574, 606
BstC8I GCNNGC 1 cut(s) 631
BstDEI CTNAG 1 cut(s) 113
BstF5I GGATG 1 cut(s) 343
BstFNI CGCG 1 cut(s) 32
BstMAI GTCTC 2 cut(s) 116, 368
BstMWI GCNNNNNNNGC 9 cut(s) 22, 160, 181, 272, 281, 290, 299, 308, 626
BstNI CCWGG 2 cut(s) 400, 534
BstNSI RCATGY 1 cut(s) 529
BstSCI CCNGG 2 cut(s) 398, 532
BstSFI CTRYAG 1 cut(s) 276
BstUI CGCG 1 cut(s) 32
BstV1I GCAGC 2 cut(s) 262, 290
Bsu15I ATCGAT 1 cut(s) 409
BsuTUI ATCGAT 1 cut(s) 409
BtsCI GGATG 1 cut(s) 343
BtsI GCAGTG 1 cut(s) 124
BtsIMutI CAGTG 1 cut(s) 124
Cac8I GCNNGC 1 cut(s) 631
CaiI CAGNNNCTG 1 cut(s) 539
ClaI ATCGAT 1 cut(s) 409
CseI GACGC 1 cut(s) 38
Csp6I GTAC 2 cut(s) 459, 470
CviAII CATG 2 cut(s) 289, 526
CviQI GTAC 2 cut(s) 459, 470
DdeI CTNAG 1 cut(s) 113
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 629
Eco130I CCWWGG 1 cut(s) 453
Eco24I GRGCYC 1 cut(s) 631
Eco31I GGTCTC 1 cut(s) 116
Eco32I GATATC 1 cut(s) 407
Eco53kI GAGCTC 1 cut(s) 629
Eco57I CTGAAG 4 cut(s) 39, 59, 405, 447
EcoICRI GAGCTC 1 cut(s) 629
EcoRII CCWGG 2 cut(s) 398, 532
EcoRV GATATC 1 cut(s) 407
EcoT14I CCWWGG 1 cut(s) 453
EcoT38I GRGCYC 1 cut(s) 631
ErhI CCWWGG 1 cut(s) 453
FaeI CATG 2 cut(s) 292, 529
FaiI YATR 7 cut(s) 65, 92, 156, 290, 384, 527, 638
FatI CATG 2 cut(s) 288, 525
FauI CCCGC 1 cut(s) 259
Fnu4HI GCNGC 3 cut(s) 276, 279, 282
FokI GGATG 1 cut(s) 350
FriOI GRGCYC 1 cut(s) 631
Fsp4HI GCNGC 3 cut(s) 276, 279, 282
GluI GCNGC 3 cut(s) 276, 279, 282
HgaI GACGC 1 cut(s) 38
Hin1II CATG 2 cut(s) 292, 529
HincII GTYRAC 1 cut(s) 523
HindII GTYRAC 1 cut(s) 523
HindIII AAGCTT 1 cut(s) 161
HinfI GANTC 2 cut(s) 316, 361
Hpy166II GTNNAC 1 cut(s) 523
Hpy188III TCNNGA 1 cut(s) 478
Hpy8I GTNNAC 1 cut(s) 523
HpyAV CCTTC 1 cut(s) 34
HpyCH4III ACNGT 3 cut(s) 49, 574, 606
HpyCH4V TGCA 1 cut(s) 278
HpyF10VI GCNNNNNNNGC 9 cut(s) 22, 160, 181, 272, 281, 290, 299, 308, 626
HpyF3I CTNAG 1 cut(s) 113
Hsp92II CATG 2 cut(s) 292, 529
LmnI GCTCC 3 cut(s) 307, 536, 626
Lsp1109I GCAGC 2 cut(s) 262, 290
MaeIII GTNAC 1 cut(s) 583
MhlI GDGCHC 1 cut(s) 631
MlyI GAGTC 1 cut(s) 370
MnlI CCTC 9 cut(s) 67, 70, 100, 115, 124, 160, 195, 327, 603
MseI TTAA 3 cut(s) 378, 443, 485
MspA1I CMGCKG 2 cut(s) 281, 425
MspR9I CCNGG 2 cut(s) 400, 534
MvaI CCWGG 2 cut(s) 400, 534
MvnI CGCG 1 cut(s) 32
MwoI GCNNNNNNNGC 9 cut(s) 22, 160, 181, 272, 281, 290, 299, 308, 626
NlaIII CATG 2 cut(s) 292, 529
NmeAIII GCCGAG 1 cut(s) 491
NspI RCATGY 1 cut(s) 529
PfeI GAWTC 1 cut(s) 316
PkrI GCNGC 3 cut(s) 277, 280, 283
PleI GAGTC 1 cut(s) 369
PpsI GAGTC 1 cut(s) 369
Psp124BI GAGCTC 1 cut(s) 631
Psp6I CCWGG 2 cut(s) 398, 532
PspGI CCWGG 2 cut(s) 398, 532
PstI CTGCAG 1 cut(s) 280
PstNI CAGNNNCTG 1 cut(s) 539
PvuII CAGCTG 1 cut(s) 425
RsaI GTAC 2 cut(s) 460, 471
RsaNI GTAC 2 cut(s) 459, 470
SacI GAGCTC 1 cut(s) 631
SaqAI TTAA 3 cut(s) 378, 443, 485
SatI GCNGC 3 cut(s) 276, 279, 282
ScaI AGTACT 1 cut(s) 471
SchI GAGTC 1 cut(s) 370
ScrFI CCNGG 2 cut(s) 400, 534
SduI GDGCHC 1 cut(s) 631
SfcI CTRYAG 1 cut(s) 276
SmlI CTYRAG 2 cut(s) 83, 164
SmoI CTYRAG 2 cut(s) 83, 164
SsiI CCGC 5 cut(s) 5, 32, 206, 266, 281
SspI AATATT 2 cut(s) 344, 448
SstI GAGCTC 1 cut(s) 631
StyD4I CCNGG 2 cut(s) 398, 532
StyI CCWWGG 1 cut(s) 453
TaaI ACNGT 3 cut(s) 49, 574, 606
TaqI TCGA 1 cut(s) 409
TatI WGTACW 1 cut(s) 469
TauI GCSGC 1 cut(s) 284
TfiI GAWTC 1 cut(s) 316
Tru1I TTAA 3 cut(s) 378, 443, 485
Tru9I TTAA 3 cut(s) 378, 443, 485
TscAI CASTG 1 cut(s) 124
TseI GCWGC 2 cut(s) 275, 278
TspDTI ATGAA 5 cut(s) 238, 277, 354, 399, 449
TspRI CASTG 1 cut(s) 124
XceI RCATGY 1 cut(s) 529
ZrmI AGTACT 1 cut(s) 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.