Rroxscaffold_2G00107360

ATPase 11, plasma

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000545
Physical Location & Seq
Reverse (-)
31213326 .. 31216543
3218 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00107360.1

Sequence Viewer

Length: 660 bp
ATGGCGAAGAACGACGCGTCCTTTGGATCGGTGGGTGAGTTCTTGAAGCGGTGCCAGCAATCCGACGATTGTAGTGAATTGAAGGTTCGGAACTTGGAATTGGAATCGGGTAATGCACGACGCGGGCGTGGATTGGGACAACACCTCGGATTGTCGCTCGATTGTGGATACAAGGAGTACGATCACTTATGTGCCTTACTCGACGTGAACCGTGTGGTTTTACGTGACAGAAAATGGACAGAAAAAGATGCGGCTAGATTGGTTCCTGGAGACATAATTAGCATCAAACTTGGTGATATCGTTCTATCTGGTGCACGCCTTCTTGAAGAGGAAAACAATGCAAGCAATGCTGCTGCTGCTCTTATGGCTCGGTCGGCCCCAAAAGCGAAGGTTTTACGTGACAGAAAATGGACAGAAAAAGATGCGGCTAGATTGGTTCCTGGAGACATAATTAGCATCAAACTTGGTGATATCGTTCTATACGGTGCACGCCTTCTTGAAGGTGATCCTTTAAAGATTGATCAGAGTGGTGGTGCTGCTGCTGTTATTGCAAACCTACTCGTCATCGTAATTGGTGGGATCCCTATTGCTATGCCAACTGTTCTTTCCATTATGATGACCGGTGGTTCACATCGCTTGTCTCGGCGGAACATGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

219

Amino Acids

23.64

Weight (kDa)

8.91

Isoelectric Point (pI)

31.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
E1-E2_ATPase PF00122 73 - 114 4e-06 P-type ATPase actuator domain
E1-E2_ATPase PF00122 125 - 176 1e-08 P-type ATPase actuator domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000545)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36571
pyrus_communis pycom02g01560 pycom08g10820 pycom09g05820 pycom13g21850 pycom14g16010
rosa_chinensis RchiOBHm_Chr2g0094861 RchiOBHm_Chr2g0124911 RchiOBHm_Chr2g0138581 RchiOBHm_Chr2g0160851 RchiOBHm_Chr4g0407411
rosa_laevigata RLG00000001652 RLG00000001872 RLG00000002037 RLG00000003076 RLG00000006419 RLG00000016771 RLG00000017383 RLG00000022851 RLG00000030563 RLG00000033869 RLG00000034176
rosa_multiflora Rmu_co8013424.1_g000001 Rmu_co8016716.1_g000001 Rmu_co8183472.1_g000001 Rmu_co8254047.1_g000001 Rmu_co8354891.1_g000001 Rmu_sc0000124.1_g000003 Rmu_sc0002132.1_g000027 Rmu_sc0003007.1_g000011 Rmu_sc0003221.1_g000096 Rmu_sc0003221.1_g000097 Rmu_sc0005119.1_g000004 Rmu_sc0008057.1_g000005 Rmu_sc0034532.1_g000001 Rmu_sc0036406.1_g000001 Rmu_ssc0000008.1_g000009
rosa_roxburghii Rroxscaffold_1G00030520 Rroxscaffold_2G00107360 Rroxscaffold_2G00153420 Rroxscaffold_5G00335750 Rroxscaffold_5G00351760 Rroxscaffold_5G00352080 Rroxscaffold_6G00419090
rosa_rugosa Rorug01G0341800 Rorug01G0341900 Rorug02G0180200 Rorug02G0180300 Rorug03G0186100 Rorug03G0186200 Rorug03G0284800 Rorug04G0104500 Rorug05G0246300 Rorug06G0108400 Rorug06G0471500 Rorug06G0510400
rosa_samantha Rh1AG159000 Rh1CG148200 Rh1CG189900 Rh2AG552800 Rh2BG473900 Rh2BG612100 Rh2BG612300 Rh2DG094500 Rh2DG482600 Rh3BG234000 Rh3CG320000 Rh4AG144200 Rh4BG127900 Rh4DG097300 Rh5AG128900 Rh5AG381200 Rh5BG363000 Rh5DG491900 Rh6AG048400 Rh6BG168100 Rh6CG005800 Rh6DG006000 Rh7AG255100 Rh7BG360600 Rh7CG271700 Rh7CG482300 Rh7DG451200
rosa_wichuraiana Rw4G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 51
AccII CGCG 2 cut(s) 17, 123
AciI CCGC 5 cut(s) 49, 123, 251, 425, 646
AclWI GGATC 4 cut(s) 34, 500, 574, 587
AfaI GTAC 1 cut(s) 179
AflIII ACRYGT 1 cut(s) 15
AgeI ACCGGT 1 cut(s) 620
AgsI TTSAA 4 cut(s) 46, 82, 326, 500
AjiI CACGTC 1 cut(s) 205
AjnI CCWGG 2 cut(s) 265, 439
AjuI GAANNNNNNNTTGG 4 cut(s) 83, 115, 589, 621
AleI CACNNNNGTG 1 cut(s) 189
AloI GAACNNNNNNTCC 1 cut(s) 34
AluBI AGCT 1 cut(s) 657
AluI AGCT 1 cut(s) 657
Alw21I GWGCWC 2 cut(s) 316, 490
Alw26I GTCTC 3 cut(s) 264, 438, 645
Alw44I GTGCAC 2 cut(s) 312, 486
AlwI GGATC 4 cut(s) 34, 500, 574, 587
AoxI GGCC 1 cut(s) 375
ApaLI GTGCAC 2 cut(s) 312, 486
ApeKI GCWGC 5 cut(s) 350, 353, 356, 536, 539
ArsI GACNNNNNNTTYG 1 cut(s) 37
AsiGI ACCGGT 1 cut(s) 620
AspS9I GGNCC 1 cut(s) 376
AsuHPI GGTGA 4 cut(s) 47, 305, 479, 515
BaeGI GKGCMC 2 cut(s) 316, 490
BamHI GGATCC 1 cut(s) 579
BanI GGYRCC 1 cut(s) 51
Bbv12I GWGCWC 2 cut(s) 316, 490
BbvI GCAGC 5 cut(s) 337, 340, 343, 523, 526
BciT130I CCWGG 2 cut(s) 267, 441
BciVI GTATCC 1 cut(s) 161
BclI TGATCA 1 cut(s) 520
BcoDI GTCTC 3 cut(s) 264, 438, 645
BfaI CTAG 2 cut(s) 255, 429
BfuI GTATCC 1 cut(s) 161
BisI GCNGC 7 cut(s) 252, 351, 354, 357, 426, 537, 540
BlsI GCNGC 7 cut(s) 253, 352, 355, 358, 427, 538, 541
Bme1390I CCNGG 2 cut(s) 267, 441
BmgBI CACGTC 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 376
BmiI GGNNCC 5 cut(s) 53, 264, 378, 438, 581
BmrFI CCNGG 2 cut(s) 267, 441
BmsI GCATC 4 cut(s) 238, 291, 412, 465
BpmI CTGGAG 2 cut(s) 288, 462
BsaAI YACGTR 2 cut(s) 224, 398
BsaJI CCNNGG 1 cut(s) 145
BsaWI WCCGGW 1 cut(s) 620
Bse118I RCCGGY 1 cut(s) 620
Bse3DI GCAATG 1 cut(s) 352
BseBI CCWGG 2 cut(s) 267, 441
BseDI CCNNGG 1 cut(s) 145
BseMI GCAATG 1 cut(s) 352
BseSI GKGCMC 2 cut(s) 316, 490
BseXI GCAGC 5 cut(s) 337, 340, 343, 523, 526
Bsh1236I CGCG 2 cut(s) 17, 123
Bsh1285I CGRYCG 1 cut(s) 374
BshFI GGCC 1 cut(s) 377
BshNI GGYRCC 1 cut(s) 51
BshTI ACCGGT 1 cut(s) 620
BsiEI CGRYCG 1 cut(s) 374
BsiHKAI GWGCWC 2 cut(s) 316, 490
BsiSI CCGG 1 cut(s) 621
BslFI GGGAC 1 cut(s) 150
BsmAI GTCTC 3 cut(s) 264, 438, 645
BsmFI GGGAC 1 cut(s) 150
BsnI GGCC 1 cut(s) 377
Bsp1286I GDGCHC 2 cut(s) 316, 490
Bsp143I GATC 5 cut(s) 26, 181, 505, 520, 579
BspACI CCGC 5 cut(s) 49, 123, 251, 425, 646
BspANI GGCC 1 cut(s) 377
BspFNI CGCG 2 cut(s) 17, 123
BspLI GGNNCC 5 cut(s) 53, 264, 378, 438, 581
BspPI GGATC 4 cut(s) 34, 500, 574, 587
BspT107I GGYRCC 1 cut(s) 51
BsrDI GCAATG 1 cut(s) 352
BsrFI RCCGGY 1 cut(s) 620
BssAI RCCGGY 1 cut(s) 620
BssECI CCNNGG 1 cut(s) 145
BssMI GATC 5 cut(s) 26, 181, 505, 520, 579
Bst2UI CCWGG 2 cut(s) 267, 441
Bst4CI ACNGT 3 cut(s) 212, 485, 601
Bst6I CTCTTC 1 cut(s) 321
BstAPI GCANNNNNTGC 1 cut(s) 347
BstBAI YACGTR 2 cut(s) 224, 398
BstC8I GCNNGC 5 cut(s) 56, 125, 316, 343, 490
BstFNI CGCG 2 cut(s) 17, 123
BstKTI GATC 5 cut(s) 29, 184, 508, 523, 582
BstMAI GTCTC 3 cut(s) 264, 438, 645
BstMBI GATC 5 cut(s) 26, 181, 505, 520, 579
BstMCI CGRYCG 1 cut(s) 374
BstMWI GCNNNNNNNGC 7 cut(s) 55, 347, 356, 365, 374, 383, 548
BstNI CCWGG 2 cut(s) 267, 441
BstSCI CCNGG 2 cut(s) 265, 439
BstSLI GKGCMC 2 cut(s) 316, 490
BstUI CGCG 2 cut(s) 17, 123
BstV1I GCAGC 5 cut(s) 337, 340, 343, 523, 526
BstX2I RGATCY 1 cut(s) 579
BstYI RGATCY 1 cut(s) 579
BsuI GTATCC 1 cut(s) 161
BsuRI GGCC 1 cut(s) 377
BtgZI GCGATG 1 cut(s) 617
BtrI CACGTC 1 cut(s) 205
Cac8I GCNNGC 5 cut(s) 56, 125, 316, 343, 490
Cfr10I RCCGGY 1 cut(s) 620
Cfr13I GGNCC 1 cut(s) 376
CseI GACGC 3 cut(s) 6, 23, 129
Csp6I GTAC 1 cut(s) 178
CspAI ACCGGT 1 cut(s) 620
CviAII CATG 1 cut(s) 652
CviJI RGCY 5 cut(s) 254, 368, 377, 428, 657
CviKI_1 RGCY 5 cut(s) 254, 368, 377, 428, 657
CviQI GTAC 1 cut(s) 178
DpnI GATC 5 cut(s) 28, 183, 507, 522, 581
DpnII GATC 5 cut(s) 26, 181, 505, 520, 579
DraI TTTAAA 1 cut(s) 513
Eam1104I CTCTTC 1 cut(s) 321
EarI CTCTTC 1 cut(s) 321
Eco32I GATATC 2 cut(s) 298, 472
EcoRII CCWGG 2 cut(s) 265, 439
EcoRV GATATC 2 cut(s) 298, 472
FaeI CATG 1 cut(s) 655
FaiI YATR 8 cut(s) 190, 275, 365, 449, 481, 593, 614, 653
FaqI GGGAC 1 cut(s) 150
FatI CATG 1 cut(s) 651
FauI CCCGC 1 cut(s) 116
FbaI TGATCA 1 cut(s) 520
Fnu4HI GCNGC 7 cut(s) 252, 351, 354, 357, 426, 537, 540
Fsp4HI GCNGC 7 cut(s) 252, 351, 354, 357, 426, 537, 540
FspBI CTAG 2 cut(s) 255, 429
GluI GCNGC 7 cut(s) 252, 351, 354, 357, 426, 537, 540
GsuI CTGGAG 2 cut(s) 288, 462
HaeIII GGCC 1 cut(s) 377
HapII CCGG 1 cut(s) 621
HgaI GACGC 3 cut(s) 6, 23, 129
Hin1II CATG 1 cut(s) 655
HinfI GANTC 1 cut(s) 104
HpaII CCGG 1 cut(s) 621
HphI GGTGA 4 cut(s) 47, 305, 479, 515
Hpy166II GTNNAC 4 cut(s) 208, 314, 488, 629
Hpy188I TCNGA 4 cut(s) 64, 90, 149, 525
Hpy188III TCNNGA 3 cut(s) 43, 323, 497
Hpy8I GTNNAC 4 cut(s) 208, 314, 488, 629
Hpy99I CGWCG 4 cut(s) 17, 68, 123, 206
HpyAV CCTTC 5 cut(s) 76, 329, 382, 494, 503
HpyCH4III ACNGT 3 cut(s) 212, 485, 601
HpyCH4IV ACGT 3 cut(s) 204, 223, 397
HpyCH4V TGCA 5 cut(s) 116, 314, 341, 488, 551
HpyF10VI GCNNNNNNNGC 7 cut(s) 55, 347, 356, 365, 374, 383, 548
HpySE526I ACGT 3 cut(s) 204, 223, 397
Hsp92II CATG 1 cut(s) 655
Ksp22I TGATCA 1 cut(s) 520
Kzo9I GATC 5 cut(s) 26, 181, 505, 520, 579
LpnPI CCDG 7 cut(s) 68, 252, 279, 294, 426, 453, 634
Lsp1109I GCAGC 5 cut(s) 337, 340, 343, 523, 526
LweI GCATC 4 cut(s) 238, 291, 412, 465
MaeI CTAG 2 cut(s) 255, 429
MaeII ACGT 3 cut(s) 204, 223, 397
MaeIII GTNAC 2 cut(s) 224, 398
MalI GATC 5 cut(s) 28, 183, 507, 522, 581
MboI GATC 5 cut(s) 26, 181, 505, 520, 579
MboII GAAGA 2 cut(s) 19, 338
MflI RGATCY 1 cut(s) 579
MhlI GDGCHC 2 cut(s) 316, 490
MluCI AATT 5 cut(s) 77, 98, 276, 450, 570
MluI ACGCGT 1 cut(s) 15
MmeI TCCRAC 1 cut(s) 87
MnlI CCTC 2 cut(s) 155, 322
MseI TTAA 1 cut(s) 512
MslI CAYNNNNRTG 2 cut(s) 189, 614
MspI CCGG 1 cut(s) 621
MspR9I CCNGG 2 cut(s) 267, 441
MvaI CCWGG 2 cut(s) 267, 441
MvnI CGCG 2 cut(s) 17, 123
MwoI GCNNNNNNNGC 7 cut(s) 55, 347, 356, 365, 374, 383, 548
NdeII GATC 5 cut(s) 26, 181, 505, 520, 579
NlaIII CATG 1 cut(s) 655
NlaIV GGNNCC 5 cut(s) 53, 264, 378, 438, 581
NmeAIII GCCGAG 1 cut(s) 622
NmuCI GTSAC 2 cut(s) 224, 398
OliI CACNNNNGTG 1 cut(s) 189
PcsI WCGNNNNNNNCGW 1 cut(s) 124
PfeI GAWTC 1 cut(s) 104
PfoI TCCNGGA 2 cut(s) 265, 439
PinAI ACCGGT 1 cut(s) 620
PkrI GCNGC 7 cut(s) 253, 352, 355, 358, 427, 538, 541
Ppu21I YACGTR 2 cut(s) 224, 398
Psp6I CCWGG 2 cut(s) 265, 439
PspGI CCWGG 2 cut(s) 265, 439
PspN4I GGNNCC 5 cut(s) 53, 264, 378, 438, 581
PspPI GGNCC 1 cut(s) 376
PsuI RGATCY 1 cut(s) 579
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
RseI CAYNNNNRTG 2 cut(s) 189, 614
SaqAI TTAA 1 cut(s) 512
SatI GCNGC 7 cut(s) 252, 351, 354, 357, 426, 537, 540
Sau3AI GATC 5 cut(s) 26, 181, 505, 520, 579
Sau96I GGNCC 1 cut(s) 376
ScrFI CCNGG 2 cut(s) 267, 441
SduI GDGCHC 2 cut(s) 316, 490
SetI ASST 9 cut(s) 87, 147, 207, 226, 393, 400, 505, 558, 659
SfaNI GCATC 4 cut(s) 238, 291, 412, 465
SmiMI CAYNNNNRTG 2 cut(s) 189, 614
Sse9I AATT 5 cut(s) 77, 98, 276, 450, 570
SsiI CCGC 5 cut(s) 49, 123, 251, 425, 646
SspMI CTAG 2 cut(s) 255, 429
StyD4I CCNGG 2 cut(s) 265, 439
TaaI ACNGT 3 cut(s) 212, 485, 601
TaiI ACGT 3 cut(s) 207, 226, 400
TaqI TCGA 2 cut(s) 159, 201
TaqII GACCGA 1 cut(s) 360
TasI AATT 5 cut(s) 77, 98, 276, 450, 570
TauI GCSGC 2 cut(s) 254, 428
TfiI GAWTC 1 cut(s) 104
Tru1I TTAA 1 cut(s) 512
Tru9I TTAA 1 cut(s) 512
TseFI GTSAC 2 cut(s) 224, 398
TseI GCWGC 5 cut(s) 350, 353, 356, 536, 539
Tsp45I GTSAC 2 cut(s) 224, 398
VneI GTGCAC 2 cut(s) 312, 486
XspI CTAG 2 cut(s) 255, 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.