Rh2BG612100

ATPase 11, plasma

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000545
Physical Location & Seq
Reverse (-)
83268942 .. 83269757
816 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG612100.1

Sequence Viewer

Length: 360 bp
ATGGCGGATGAGAAGCCTGAAGTGCTTGACGCGGTGCTGAAGGAAACAGTTGATTTGGAAAACATACCCATTGAGGAGGTGCTTGAGAATATGAGATGTAGCAAAGAGGGTCTCAGCAGTGAAGCTGCTGAGGAAAGATTAGCCATTTTTGGGCATAACAAGCTTCAGGAAAAGCAGGGGAAGCCTCCTGACTGGCAAGATTTTGCGGTTATTATTACTCTGCTGGTCATCAACTCCACCATTAGTTTCATCAAGGAAAATAATGCGGGTAATGCTGCAGCAGCTCTCATGGCTCGTCTTGCTCCTAAAGCCAAGCAGAATCTGATCCCCAAAAGAGGGATAAATATTTACACAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

119

Amino Acids

13.16

Weight (kDa)

4.95

Isoelectric Point (pI)

41.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cation_ATPase_N PF00690 21 - 62 1.5e-09 Cation transporter/ATPase, N-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000545)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36571
pyrus_communis pycom02g01560 pycom08g10820 pycom09g05820 pycom13g21850 pycom14g16010
rosa_chinensis RchiOBHm_Chr2g0094861 RchiOBHm_Chr2g0124911 RchiOBHm_Chr2g0138581 RchiOBHm_Chr2g0160851 RchiOBHm_Chr4g0407411
rosa_laevigata RLG00000001652 RLG00000001872 RLG00000002037 RLG00000003076 RLG00000006419 RLG00000016771 RLG00000017383 RLG00000022851 RLG00000030563 RLG00000033869 RLG00000034176
rosa_multiflora Rmu_co8013424.1_g000001 Rmu_co8016716.1_g000001 Rmu_co8183472.1_g000001 Rmu_co8254047.1_g000001 Rmu_co8354891.1_g000001 Rmu_sc0000124.1_g000003 Rmu_sc0002132.1_g000027 Rmu_sc0003007.1_g000011 Rmu_sc0003221.1_g000096 Rmu_sc0003221.1_g000097 Rmu_sc0005119.1_g000004 Rmu_sc0008057.1_g000005 Rmu_sc0034532.1_g000001 Rmu_sc0036406.1_g000001 Rmu_ssc0000008.1_g000009
rosa_roxburghii Rroxscaffold_1G00030520 Rroxscaffold_2G00107360 Rroxscaffold_2G00153420 Rroxscaffold_5G00335750 Rroxscaffold_5G00351760 Rroxscaffold_5G00352080 Rroxscaffold_6G00419090
rosa_rugosa Rorug01G0341800 Rorug01G0341900 Rorug02G0180200 Rorug02G0180300 Rorug03G0186100 Rorug03G0186200 Rorug03G0284800 Rorug04G0104500 Rorug05G0246300 Rorug06G0108400 Rorug06G0471500 Rorug06G0510400
rosa_samantha Rh1AG159000 Rh1CG148200 Rh1CG189900 Rh2AG552800 Rh2BG473900 Rh2BG612100 Rh2BG612300 Rh2DG094500 Rh2DG482600 Rh3BG234000 Rh3CG320000 Rh4AG144200 Rh4BG127900 Rh4DG097300 Rh5AG128900 Rh5AG381200 Rh5BG363000 Rh5DG491900 Rh6AG048400 Rh6BG168100 Rh6CG005800 Rh6DG006000 Rh7AG255100 Rh7BG360600 Rh7CG271700 Rh7CG482300 Rh7DG451200
rosa_wichuraiana Rw4G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 32
AciI CCGC 4 cut(s) 5, 32, 206, 266
AclWI GGATC 1 cut(s) 319
AcuI CTGAAG 3 cut(s) 39, 59, 149
AfiI CCNNNNNNNGG 3 cut(s) 150, 335, 336
AluBI AGCT 3 cut(s) 125, 163, 284
AluI AGCT 3 cut(s) 125, 163, 284
Alw26I GTCTC 1 cut(s) 116
AlwI GGATC 1 cut(s) 319
AlwNI CAGNNNCTG 1 cut(s) 322
ApeKI GCWGC 4 cut(s) 125, 275, 278, 281
BbvCI CCTCAGC 1 cut(s) 129
BbvI GCAGC 4 cut(s) 112, 262, 290, 293
BcoDI GTCTC 1 cut(s) 116
BfmI CTRYAG 1 cut(s) 276
BisI GCNGC 4 cut(s) 126, 276, 279, 282
BlsI GCNGC 4 cut(s) 127, 277, 280, 283
Bpu10I CCTNAGC 1 cut(s) 129
BpuEI CTTGAG 1 cut(s) 104
BsaI GGTCTC 1 cut(s) 116
Bsc4I CCNNNNNNNGG 3 cut(s) 150, 335, 336
Bse1I ACTGG 1 cut(s) 197
BseGI GGATG 1 cut(s) 13
BseLI CCNNNNNNNGG 3 cut(s) 150, 335, 336
BseMII CTCAG 2 cut(s) 120, 127
BseNI ACTGG 1 cut(s) 197
BseRI GAGGAG 1 cut(s) 89
BseXI GCAGC 4 cut(s) 112, 262, 290, 293
Bsh1236I CGCG 1 cut(s) 32
BslI CCNNNNNNNGG 3 cut(s) 150, 335, 336
BsmAI GTCTC 1 cut(s) 116
Bso31I GGTCTC 1 cut(s) 116
Bsp143I GATC 1 cut(s) 324
BspACI CCGC 4 cut(s) 5, 32, 206, 266
BspCNI CTCAG 2 cut(s) 121, 126
BspFNI CGCG 1 cut(s) 32
BspMAI CTGCAG 1 cut(s) 280
BspPI GGATC 1 cut(s) 319
BspTNI GGTCTC 1 cut(s) 116
BsrI ACTGG 1 cut(s) 197
BssMI GATC 1 cut(s) 324
Bst4CI ACNGT 1 cut(s) 49
BstDEI CTNAG 2 cut(s) 113, 129
BstF5I GGATG 1 cut(s) 13
BstFNI CGCG 1 cut(s) 32
BstKTI GATC 1 cut(s) 327
BstMAI GTCTC 1 cut(s) 116
BstMBI GATC 1 cut(s) 324
BstMWI GCNNNNNNNGC 8 cut(s) 22, 160, 181, 272, 281, 290, 299, 308
BstSFI CTRYAG 1 cut(s) 276
BstUI CGCG 1 cut(s) 32
BstV1I GCAGC 4 cut(s) 112, 262, 290, 293
BtsCI GGATG 1 cut(s) 13
BtsI GCAGTG 1 cut(s) 124
BtsIMutI CAGTG 1 cut(s) 124
CaiI CAGNNNCTG 1 cut(s) 322
CseI GACGC 1 cut(s) 38
CviAII CATG 1 cut(s) 289
CviJI RGCY 8 cut(s) 16, 125, 143, 163, 184, 284, 293, 311
CviKI_1 RGCY 8 cut(s) 16, 125, 143, 163, 184, 284, 293, 311
DdeI CTNAG 2 cut(s) 113, 129
DpnI GATC 1 cut(s) 326
DpnII GATC 1 cut(s) 324
EciI GGCGGA 1 cut(s) 20
Eco31I GGTCTC 1 cut(s) 116
Eco57I CTGAAG 3 cut(s) 39, 59, 149
FaeI CATG 1 cut(s) 292
FaiI YATR 4 cut(s) 65, 92, 156, 290
FatI CATG 1 cut(s) 288
FauI CCCGC 1 cut(s) 259
Fnu4HI GCNGC 4 cut(s) 126, 276, 279, 282
FokI GGATG 1 cut(s) 20
Fsp4HI GCNGC 4 cut(s) 126, 276, 279, 282
GluI GCNGC 4 cut(s) 126, 276, 279, 282
HgaI GACGC 1 cut(s) 38
Hin1II CATG 1 cut(s) 292
HindIII AAGCTT 1 cut(s) 161
HinfI GANTC 1 cut(s) 319
Hpy188I TCNGA 1 cut(s) 324
Hpy188III TCNNGA 2 cut(s) 167, 188
HpyAV CCTTC 1 cut(s) 34
HpyCH4III ACNGT 1 cut(s) 49
HpyCH4V TGCA 1 cut(s) 278
HpyF10VI GCNNNNNNNGC 8 cut(s) 22, 160, 181, 272, 281, 290, 299, 308
HpyF3I CTNAG 2 cut(s) 113, 129
Hsp92II CATG 1 cut(s) 292
Kzo9I GATC 1 cut(s) 324
LmnI GCTCC 1 cut(s) 307
LpnPI CCDG 6 cut(s) 30, 152, 161, 178, 201, 209
Lsp1109I GCAGC 4 cut(s) 112, 262, 290, 293
MalI GATC 1 cut(s) 326
MboI GATC 1 cut(s) 324
MnlI CCTC 6 cut(s) 67, 70, 100, 124, 195, 329
MseI TTAA 1 cut(s) 358
MvnI CGCG 1 cut(s) 32
MwoI GCNNNNNNNGC 8 cut(s) 22, 160, 181, 272, 281, 290, 299, 308
NdeII GATC 1 cut(s) 324
NlaIII CATG 1 cut(s) 292
PfeI GAWTC 1 cut(s) 319
PkrI GCNGC 4 cut(s) 127, 277, 280, 283
PstI CTGCAG 1 cut(s) 280
PstNI CAGNNNCTG 1 cut(s) 322
SaqAI TTAA 1 cut(s) 358
SatI GCNGC 4 cut(s) 126, 276, 279, 282
Sau3AI GATC 1 cut(s) 324
SetI ASST 4 cut(s) 81, 127, 165, 286
SfcI CTRYAG 1 cut(s) 276
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
SsiI CCGC 4 cut(s) 5, 32, 206, 266
SspI AATATT 1 cut(s) 346
TaaI ACNGT 1 cut(s) 49
TfiI GAWTC 1 cut(s) 319
Tru1I TTAA 1 cut(s) 358
Tru9I TTAA 1 cut(s) 358
TscAI CASTG 1 cut(s) 124
TseI GCWGC 4 cut(s) 125, 275, 278, 281
TspDTI ATGAA 1 cut(s) 238
TspRI CASTG 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.