Rh6DG006000

ATPase 10, plasma

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000545
Physical Location & Seq
Forward (+)
677254 .. 678422
1169 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG006000.1

Sequence Viewer

Length: 312 bp
ATGGCTGAAGATCTGGACAAACCGTTGTTGGATCCTGAGAATTTCAATAGAGATGGCATCGATTTGGAGAACAAAATTTTGAAGTTTCTTAGCTTTATGTGGAACCCCTTGTCATGGGTTATGGAAGCTGCAGCAGTTATGGCACTTGTCCTTGCTAATGGGGGAGGTGAGGCTCCTGACTGGCAAGACTTTTTTGGGATTATTGGCCTATTAATAATCAATTCAACAATTAGTTTCATAGAGGAGAATAATGCGGGAAATGCTGCATCAGCTCTTATGGAACGTTTATCTCCAAAGACAAGGATGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000325 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006725 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0006996 GO:0007033 GO:0007035 GO:0007275 GO:0008150 GO:0008152 GO:0008324 GO:0008553 GO:0009058 GO:0009506 GO:0009507 GO:0009536 GO:0009698 GO:0009699 GO:0009705 GO:0009791 GO:0009987 GO:0010023 GO:0010154 GO:0010214 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0015672 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0017144 GO:0018130 GO:0018958 GO:0019438 GO:0019725 GO:0019748 GO:0019829 GO:0022414 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030054 GO:0030641 GO:0031090 GO:0032501 GO:0032502 GO:0034220 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044237 GO:0044249 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0045851 GO:0046189 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055044 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805 GO:0099131 GO:0099132 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1902600
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

103

Amino Acids

11.37

Weight (kDa)

4.22

Isoelectric Point (pI)

31.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000545)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36571
pyrus_communis pycom02g01560 pycom08g10820 pycom09g05820 pycom13g21850 pycom14g16010
rosa_chinensis RchiOBHm_Chr2g0094861 RchiOBHm_Chr2g0124911 RchiOBHm_Chr2g0138581 RchiOBHm_Chr2g0160851 RchiOBHm_Chr4g0407411
rosa_laevigata RLG00000001652 RLG00000001872 RLG00000002037 RLG00000003076 RLG00000006419 RLG00000016771 RLG00000017383 RLG00000022851 RLG00000030563 RLG00000033869 RLG00000034176
rosa_multiflora Rmu_co8013424.1_g000001 Rmu_co8016716.1_g000001 Rmu_co8183472.1_g000001 Rmu_co8254047.1_g000001 Rmu_co8354891.1_g000001 Rmu_sc0000124.1_g000003 Rmu_sc0002132.1_g000027 Rmu_sc0003007.1_g000011 Rmu_sc0003221.1_g000096 Rmu_sc0003221.1_g000097 Rmu_sc0005119.1_g000004 Rmu_sc0008057.1_g000005 Rmu_sc0034532.1_g000001 Rmu_sc0036406.1_g000001 Rmu_ssc0000008.1_g000009
rosa_roxburghii Rroxscaffold_1G00030520 Rroxscaffold_2G00107360 Rroxscaffold_2G00153420 Rroxscaffold_5G00335750 Rroxscaffold_5G00351760 Rroxscaffold_5G00352080 Rroxscaffold_6G00419090
rosa_rugosa Rorug01G0341800 Rorug01G0341900 Rorug02G0180200 Rorug02G0180300 Rorug03G0186100 Rorug03G0186200 Rorug03G0284800 Rorug04G0104500 Rorug05G0246300 Rorug06G0108400 Rorug06G0471500 Rorug06G0510400
rosa_samantha Rh1AG159000 Rh1CG148200 Rh1CG189900 Rh2AG552800 Rh2BG473900 Rh2BG612100 Rh2BG612300 Rh2DG094500 Rh2DG482600 Rh3BG234000 Rh3CG320000 Rh4AG144200 Rh4BG127900 Rh4DG097300 Rh5AG128900 Rh5AG381200 Rh5BG363000 Rh5DG491900 Rh6AG048400 Rh6BG168100 Rh6CG005800 Rh6DG006000 Rh7AG255100 Rh7BG360600 Rh7CG271700 Rh7CG482300 Rh7DG451200
rosa_wichuraiana Rw4G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 254
AclI AACGTT 1 cut(s) 283
AclWI GGATC 2 cut(s) 26, 39
AcsI RAATTY 2 cut(s) 40, 75
AcuI CTGAAG 1 cut(s) 27
AfiI CCNNNNNNNGG 1 cut(s) 114
AgsI TTSAA 3 cut(s) 46, 82, 225
AluBI AGCT 3 cut(s) 93, 128, 272
AluI AGCT 3 cut(s) 93, 128, 272
AlwI GGATC 2 cut(s) 26, 39
AoxI GGCC 1 cut(s) 205
ApeKI GCWGC 3 cut(s) 128, 131, 263
ApoI RAATTY 2 cut(s) 40, 75
AseI ATTAAT 1 cut(s) 212
AsuHPI GGTGA 1 cut(s) 179
BamHI GGATCC 1 cut(s) 31
BbvI GCAGC 3 cut(s) 115, 143, 250
BccI CCATC 1 cut(s) 47
BfmI CTRYAG 1 cut(s) 129
BglII AGATCT 1 cut(s) 10
BisI GCNGC 3 cut(s) 129, 132, 264
BlsI GCNGC 3 cut(s) 130, 133, 265
BmiI GGNNCC 3 cut(s) 33, 104, 174
BmsI GCATC 2 cut(s) 66, 275
Bsa29I ATCGAT 1 cut(s) 60
Bsc4I CCNNNNNNNGG 1 cut(s) 114
Bse1I ACTGG 1 cut(s) 185
BseCI ATCGAT 1 cut(s) 60
BseGI GGATG 1 cut(s) 309
BseLI CCNNNNNNNGG 1 cut(s) 114
BseMII CTCAG 1 cut(s) 27
BseNI ACTGG 1 cut(s) 185
BseRI GAGGAG 1 cut(s) 257
BseXI GCAGC 3 cut(s) 115, 143, 250
BshFI GGCC 1 cut(s) 207
BshVI ATCGAT 1 cut(s) 60
BslI CCNNNNNNNGG 1 cut(s) 114
BsnI GGCC 1 cut(s) 207
Bsp143I GATC 2 cut(s) 10, 31
BspACI CCGC 1 cut(s) 254
BspANI GGCC 1 cut(s) 207
BspCNI CTCAG 1 cut(s) 28
BspDI ATCGAT 1 cut(s) 60
BspLI GGNNCC 3 cut(s) 33, 104, 174
BspMAI CTGCAG 1 cut(s) 133
BspPI GGATC 2 cut(s) 26, 39
BsrI ACTGG 1 cut(s) 185
BssMI GATC 2 cut(s) 10, 31
Bst4CI ACNGT 1 cut(s) 24
BstDEI CTNAG 2 cut(s) 36, 89
BstF5I GGATG 1 cut(s) 309
BstKTI GATC 2 cut(s) 13, 34
BstMBI GATC 2 cut(s) 10, 31
BstMWI GCNNNNNNNGC 3 cut(s) 140, 260, 269
BstSFI CTRYAG 1 cut(s) 129
BstV1I GCAGC 3 cut(s) 115, 143, 250
BstX2I RGATCY 2 cut(s) 10, 31
BstYI RGATCY 2 cut(s) 10, 31
Bsu15I ATCGAT 1 cut(s) 60
BsuRI GGCC 1 cut(s) 207
BsuTUI ATCGAT 1 cut(s) 60
BtsCI GGATG 1 cut(s) 309
ClaI ATCGAT 1 cut(s) 60
CviAII CATG 1 cut(s) 114
CviJI RGCY 6 cut(s) 5, 93, 128, 173, 207, 272
CviKI_1 RGCY 6 cut(s) 5, 93, 128, 173, 207, 272
DdeI CTNAG 2 cut(s) 36, 89
DpnI GATC 2 cut(s) 12, 33
DpnII GATC 2 cut(s) 10, 31
Eco57I CTGAAG 1 cut(s) 27
FaeI CATG 1 cut(s) 117
FaiI YATR 6 cut(s) 98, 115, 122, 140, 239, 278
FatI CATG 1 cut(s) 113
FauI CCCGC 1 cut(s) 247
Fnu4HI GCNGC 3 cut(s) 129, 132, 264
Fsp4HI GCNGC 3 cut(s) 129, 132, 264
GluI GCNGC 3 cut(s) 129, 132, 264
HaeIII GGCC 1 cut(s) 207
Hin1II CATG 1 cut(s) 117
HphI GGTGA 1 cut(s) 179
Hpy188III TCNNGA 3 cut(s) 14, 35, 176
HpyCH4III ACNGT 1 cut(s) 24
HpyCH4IV ACGT 1 cut(s) 283
HpyCH4V TGCA 2 cut(s) 131, 266
HpyF10VI GCNNNNNNNGC 3 cut(s) 140, 260, 269
HpyF3I CTNAG 2 cut(s) 36, 89
HpySE526I ACGT 1 cut(s) 283
Hsp92II CATG 1 cut(s) 117
Kzo9I GATC 2 cut(s) 10, 31
LmnI GCTCC 1 cut(s) 178
LpnPI CCDG 3 cut(s) 48, 166, 189
Lsp1109I GCAGC 3 cut(s) 115, 143, 250
LweI GCATC 2 cut(s) 66, 275
MaeII ACGT 1 cut(s) 283
MalI GATC 2 cut(s) 12, 33
MboI GATC 2 cut(s) 10, 31
MboII GAAGA 1 cut(s) 20
MflI RGATCY 2 cut(s) 10, 31
MluCI AATT 4 cut(s) 40, 75, 220, 228
MmeI TCCRAC 1 cut(s) 9
MnlI CCTC 3 cut(s) 158, 163, 235
MseI TTAA 2 cut(s) 212, 310
MwoI GCNNNNNNNGC 3 cut(s) 140, 260, 269
NdeII GATC 2 cut(s) 10, 31
NlaIII CATG 1 cut(s) 117
NlaIV GGNNCC 3 cut(s) 33, 104, 174
PkrI GCNGC 3 cut(s) 130, 133, 265
PshBI ATTAAT 1 cut(s) 212
Psp1406I AACGTT 1 cut(s) 283
PspN4I GGNNCC 3 cut(s) 33, 104, 174
PstI CTGCAG 1 cut(s) 133
PsuI RGATCY 2 cut(s) 10, 31
SaqAI TTAA 2 cut(s) 212, 310
SatI GCNGC 3 cut(s) 129, 132, 264
Sau3AI GATC 2 cut(s) 10, 31
SetI ASST 5 cut(s) 95, 130, 169, 274, 286
SfaNI GCATC 2 cut(s) 66, 275
SfcI CTRYAG 1 cut(s) 129
Sse9I AATT 4 cut(s) 40, 75, 220, 228
SsiI CCGC 1 cut(s) 254
TaaI ACNGT 1 cut(s) 24
TaiI ACGT 1 cut(s) 286
TaqI TCGA 1 cut(s) 60
TasI AATT 4 cut(s) 40, 75, 220, 228
Tru1I TTAA 2 cut(s) 212, 310
Tru9I TTAA 2 cut(s) 212, 310
TseI GCWGC 3 cut(s) 128, 131, 263
TspDTI ATGAA 1 cut(s) 226
VspI ATTAAT 1 cut(s) 212
XapI RAATTY 2 cut(s) 40, 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.