pycom08g10820

Plasma membrane ATPase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0000545
Physical Location & Seq
Reverse (-)
9054682 .. 9055454
773 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g10820.2

Sequence Viewer

Length: 525 bp
ATGTGGTCCAAAACACTGTTCATTCTACAGCATTGCTTGAATTTCGTATTGCAGAAAACAGTTGGTTGCACGCAGTTACACCTAAGAAGTGAAACTGTTCATTCATGTGTATTTGTTCATTTTGTTTCACAGGAACGGATTCCGGTAGAGGAAGTCTTTGAGCAGCTGAAATGTACAAGAGACGGTCTGACCGGAGAAGAAGGAGCCAACAGGCTTCGAGTCTTTGGACCAAACAAACTAGAAGAGAAAAAGGAGAGCAAACTGCTCAAGTTCTTGGGATTTATGCGGAATCCTTTGTCATGGGTCATGGAAGTTGCAGCTCTGATGGCATCAGGAAGGCGTCCTGATTGGCAGGACTTTGTTGGCATTGTTGTTCTTCTGGTCATTAACTCTACTATCAGTTTCATTGAAGAAGACAATACTGGTAATGCTGCTGCAGCCCTTATGGCCGGTCTAGTTCCCAAGACTAAGGTTCTTAGAGATGGTCGATGGACTGAGCAAGATGCTTCAATTTTGGTGCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

175

Amino Acids

19.64

Weight (kDa)

6.9

Isoelectric Point (pI)

51.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000545)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36571
pyrus_communis pycom02g01560 pycom08g10820 pycom09g05820 pycom13g21850 pycom14g16010
rosa_chinensis RchiOBHm_Chr2g0094861 RchiOBHm_Chr2g0124911 RchiOBHm_Chr2g0138581 RchiOBHm_Chr2g0160851 RchiOBHm_Chr4g0407411
rosa_laevigata RLG00000001652 RLG00000001872 RLG00000002037 RLG00000003076 RLG00000006419 RLG00000016771 RLG00000017383 RLG00000022851 RLG00000030563 RLG00000033869 RLG00000034176
rosa_multiflora Rmu_co8013424.1_g000001 Rmu_co8016716.1_g000001 Rmu_co8183472.1_g000001 Rmu_co8254047.1_g000001 Rmu_co8354891.1_g000001 Rmu_sc0000124.1_g000003 Rmu_sc0002132.1_g000027 Rmu_sc0003007.1_g000011 Rmu_sc0003221.1_g000096 Rmu_sc0003221.1_g000097 Rmu_sc0005119.1_g000004 Rmu_sc0008057.1_g000005 Rmu_sc0034532.1_g000001 Rmu_sc0036406.1_g000001 Rmu_ssc0000008.1_g000009
rosa_roxburghii Rroxscaffold_1G00030520 Rroxscaffold_2G00107360 Rroxscaffold_2G00153420 Rroxscaffold_5G00335750 Rroxscaffold_5G00351760 Rroxscaffold_5G00352080 Rroxscaffold_6G00419090
rosa_rugosa Rorug01G0341800 Rorug01G0341900 Rorug02G0180200 Rorug02G0180300 Rorug03G0186100 Rorug03G0186200 Rorug03G0284800 Rorug04G0104500 Rorug05G0246300 Rorug06G0108400 Rorug06G0471500 Rorug06G0510400
rosa_samantha Rh1AG159000 Rh1CG148200 Rh1CG189900 Rh2AG552800 Rh2BG473900 Rh2BG612100 Rh2BG612300 Rh2DG094500 Rh2DG482600 Rh3BG234000 Rh3CG320000 Rh4AG144200 Rh4BG127900 Rh4DG097300 Rh5AG128900 Rh5AG381200 Rh5BG363000 Rh5DG491900 Rh6AG048400 Rh6BG168100 Rh6CG005800 Rh6DG006000 Rh7AG255100 Rh7BG360600 Rh7CG271700 Rh7CG482300 Rh7DG451200
rosa_wichuraiana Rw4G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 517
AciI CCGC 1 cut(s) 286
AcoI YGGCCR 1 cut(s) 447
AcsI RAATTY 1 cut(s) 40
AcyI GRCGYC 1 cut(s) 340
AfaI GTAC 1 cut(s) 175
AgsI TTSAA 3 cut(s) 40, 410, 510
AjuI GAANNNNNNNTTGG 1 cut(s) 34
AluBI AGCT 2 cut(s) 166, 320
AluI AGCT 2 cut(s) 166, 320
Alw26I GTCTC 1 cut(s) 174
AoxI GGCC 1 cut(s) 447
ApeKI GCWGC 5 cut(s) 163, 317, 431, 434, 437
ApoI RAATTY 1 cut(s) 40
Asp700I GAANNNNTTC 2 cut(s) 96, 138
AspS9I GGNCC 2 cut(s) 6, 227
AvaII GGWCC 2 cut(s) 6, 227
BaeGI GKGCMC 1 cut(s) 522
BanI GGYRCC 1 cut(s) 517
BbsI GAAGAC 1 cut(s) 420
BbvI GCAGC 5 cut(s) 175, 329, 418, 421, 449
BccI CCATC 3 cut(s) 319, 476, 483
BcoDI GTCTC 1 cut(s) 174
BfaI CTAG 2 cut(s) 239, 455
BfmI CTRYAG 2 cut(s) 26, 435
BglI GCCNNNNNGGC 1 cut(s) 446
BisI GCNGC 5 cut(s) 164, 318, 432, 435, 438
BlsI GCNGC 5 cut(s) 165, 319, 433, 436, 439
Bme18I GGWCC 2 cut(s) 6, 227
BmgT120I GGNCC 2 cut(s) 6, 227
BmiI GGNNCC 2 cut(s) 205, 519
BmsI GCATC 2 cut(s) 338, 493
BpiI GAAGAC 1 cut(s) 420
BpuEI CTTGAG 1 cut(s) 251
BsaHI GRCGYC 1 cut(s) 340
BsaWI WCCGGW 2 cut(s) 142, 191
Bse118I RCCGGY 1 cut(s) 449
Bse1I ACTGG 1 cut(s) 427
Bse3DI GCAATG 1 cut(s) 31
BseMI GCAATG 1 cut(s) 31
BseMII CTCAG 1 cut(s) 486
BseNI ACTGG 1 cut(s) 427
BseSI GKGCMC 1 cut(s) 522
BseXI GCAGC 5 cut(s) 175, 329, 418, 421, 449
BshFI GGCC 1 cut(s) 449
BshNI GGYRCC 1 cut(s) 517
BsiSI CCGG 3 cut(s) 143, 192, 450
BsmAI GTCTC 1 cut(s) 174
BsmBI CGTCTC 1 cut(s) 174
BsnI GGCC 1 cut(s) 449
Bsp1286I GDGCHC 1 cut(s) 522
Bsp1407I TGTACA 1 cut(s) 173
BspACI CCGC 1 cut(s) 286
BspANI GGCC 1 cut(s) 449
BspCNI CTCAG 1 cut(s) 487
BspLI GGNNCC 2 cut(s) 205, 519
BspMAI CTGCAG 1 cut(s) 439
BspT107I GGYRCC 1 cut(s) 517
BsrDI GCAATG 1 cut(s) 31
BsrFI RCCGGY 1 cut(s) 449
BsrGI TGTACA 1 cut(s) 173
BsrI ACTGG 1 cut(s) 427
BssAI RCCGGY 1 cut(s) 449
BssNI GRCGYC 1 cut(s) 340
Bst4CI ACNGT 4 cut(s) 18, 61, 97, 185
Bst6I CTCTTC 1 cut(s) 237
BstACI GRCGYC 1 cut(s) 340
BstAUI TGTACA 1 cut(s) 173
BstC8I GCNNGC 1 cut(s) 71
BstDEI CTNAG 4 cut(s) 83, 468, 476, 495
BstMAI GTCTC 1 cut(s) 174
BstMWI GCNNNNNNNGC 3 cut(s) 326, 437, 446
BstSFI CTRYAG 2 cut(s) 26, 435
BstSLI GKGCMC 1 cut(s) 522
BstV1I GCAGC 5 cut(s) 175, 329, 418, 421, 449
BstV2I GAAGAC 1 cut(s) 420
BsuRI GGCC 1 cut(s) 449
BtsIMutI CAGTG 1 cut(s) 14
Cac8I GCNNGC 1 cut(s) 71
Cfr10I RCCGGY 1 cut(s) 449
Cfr13I GGNCC 2 cut(s) 6, 227
CseI GACGC 1 cut(s) 329
Csp6I GTAC 1 cut(s) 174
CviAII CATG 3 cut(s) 105, 300, 307
CviJI RGCY 6 cut(s) 166, 206, 214, 320, 440, 449
CviKI_1 RGCY 6 cut(s) 166, 206, 214, 320, 440, 449
CviQI GTAC 1 cut(s) 174
DdeI CTNAG 4 cut(s) 83, 468, 476, 495
EaeI YGGCCR 1 cut(s) 447
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
Eco47I GGWCC 2 cut(s) 6, 227
Esp3I CGTCTC 1 cut(s) 174
FaeI CATG 3 cut(s) 108, 303, 310
FaiI YATR 5 cut(s) 106, 284, 301, 308, 446
FatI CATG 3 cut(s) 104, 299, 306
Fnu4HI GCNGC 5 cut(s) 164, 318, 432, 435, 438
Fsp4HI GCNGC 5 cut(s) 164, 318, 432, 435, 438
FspBI CTAG 2 cut(s) 239, 455
GluI GCNGC 5 cut(s) 164, 318, 432, 435, 438
HaeIII GGCC 1 cut(s) 449
HapII CCGG 3 cut(s) 143, 192, 450
HgaI GACGC 1 cut(s) 329
Hin1I GRCGYC 1 cut(s) 340
Hin1II CATG 3 cut(s) 108, 303, 310
HinfI GANTC 3 cut(s) 139, 219, 289
HpaII CCGG 3 cut(s) 143, 192, 450
Hpy188I TCNGA 2 cut(s) 189, 324
Hpy188III TCNNGA 2 cut(s) 333, 344
HpyAV CCTTC 2 cut(s) 194, 330
HpyCH4III ACNGT 4 cut(s) 18, 61, 97, 185
HpyCH4V TGCA 4 cut(s) 52, 69, 317, 437
HpyF10VI GCNNNNNNNGC 3 cut(s) 326, 437, 446
HpyF3I CTNAG 4 cut(s) 83, 468, 476, 495
Hsp92I GRCGYC 1 cut(s) 340
Hsp92II CATG 3 cut(s) 108, 303, 310
LmnI GCTCC 1 cut(s) 203
Lsp1109I GCAGC 5 cut(s) 175, 329, 418, 421, 449
LweI GCATC 2 cut(s) 338, 493
MaeI CTAG 2 cut(s) 239, 455
MaeIII GTNAC 1 cut(s) 75
MboII GAAGA 5 cut(s) 209, 254, 368, 422, 425
MhlI GDGCHC 1 cut(s) 522
MluCI AATT 2 cut(s) 40, 510
MlyI GAGTC 1 cut(s) 228
MnlI CCTC 1 cut(s) 142
MroXI GAANNNNTTC 2 cut(s) 96, 138
MseI TTAA 1 cut(s) 387
MslI CAYNNNNRTG 1 cut(s) 105
MspA1I CMGCKG 1 cut(s) 166
MspI CCGG 3 cut(s) 143, 192, 450
MwoI GCNNNNNNNGC 3 cut(s) 326, 437, 446
NlaIII CATG 3 cut(s) 108, 303, 310
NlaIV GGNNCC 2 cut(s) 205, 519
PdmI GAANNNNTTC 2 cut(s) 96, 138
PfeI GAWTC 2 cut(s) 139, 289
PkrI GCNGC 5 cut(s) 165, 319, 433, 436, 439
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
PspN4I GGNNCC 2 cut(s) 205, 519
PspPI GGNCC 2 cut(s) 6, 227
PstI CTGCAG 1 cut(s) 439
PvuII CAGCTG 1 cut(s) 166
RsaI GTAC 1 cut(s) 175
RsaNI GTAC 1 cut(s) 174
RseI CAYNNNNRTG 1 cut(s) 105
SaqAI TTAA 1 cut(s) 387
SatI GCNGC 5 cut(s) 164, 318, 432, 435, 438
Sau96I GGNCC 2 cut(s) 6, 227
SchI GAGTC 1 cut(s) 228
SduI GDGCHC 1 cut(s) 522
SetI ASST 4 cut(s) 84, 168, 322, 474
SfaNI GCATC 2 cut(s) 338, 493
SfcI CTRYAG 2 cut(s) 26, 435
SinI GGWCC 2 cut(s) 6, 227
SmiMI CAYNNNNRTG 1 cut(s) 105
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
Sse9I AATT 2 cut(s) 40, 510
SsiI CCGC 1 cut(s) 286
SspMI CTAG 2 cut(s) 239, 455
TaaI ACNGT 4 cut(s) 18, 61, 97, 185
TaqI TCGA 2 cut(s) 217, 487
TasI AATT 2 cut(s) 40, 510
TatI WGTACW 1 cut(s) 173
TfiI GAWTC 2 cut(s) 139, 289
Tru1I TTAA 1 cut(s) 387
Tru9I TTAA 1 cut(s) 387
TscAI CASTG 1 cut(s) 21
TseI GCWGC 5 cut(s) 163, 317, 431, 434, 437
TspDTI ATGAA 5 cut(s) 10, 89, 93, 107, 394
TspGWI ACGGA 1 cut(s) 151
TspRI CASTG 1 cut(s) 21
VpaK11BI GGWCC 2 cut(s) 6, 227
XapI RAATTY 1 cut(s) 40
XmnI GAANNNNTTC 2 cut(s) 96, 138
XspI CTAG 2 cut(s) 239, 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.