Rw4G004970

Mitochondrial biogenesis AIM24

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000545
Physical Location & Seq
Forward (+)
9949783 .. 9952342
2560 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G004970.1

Sequence Viewer

Length: 435 bp
ATGTCCTTCTCCCCCAAATTGATTCAGCCTTATCAGAGGTCTGGAAGCGGTCGTAGGCAACAACAATTTGATATCTCCCCCAATTTCGATCCGGTGTCTCCGCCCATTACTCCCTATCTCTATCATTCAATTCTGGGTCTGGTAGTTTCTGTCTATGCAGAGGGTTTTCTAAGACAGAAGCTATCTGGCCAAGGGCTTGCATTTATAATTGCAGGTGGATCTGTTGTACAAAAAAATCTTGAGATGGGCAAGGTACTATCTGTTGATGTTTCTTGTATAGCAGTTGTGACTAGCTACAACAGTCAACGTCCAAATCAAATACAATGGGCCATGAGAAGAGCAGTGTTTGATGTAAGTTGCTTCAATTTCTGGAAATTTGCAGTCTCCTTGTGCTATTGCTGCTATATTGATTACATACAGTCTCCTTACACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIM24

Protein Analysis

144

Amino Acids

16.23

Weight (kDa)

9.04

Isoelectric Point (pI)

54.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AIM24 PF01987 52 - 99 1.2e-08 Mitochondrial biogenesis AIM24
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000545)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36571
pyrus_communis pycom02g01560 pycom08g10820 pycom09g05820 pycom13g21850 pycom14g16010
rosa_chinensis RchiOBHm_Chr2g0094861 RchiOBHm_Chr2g0124911 RchiOBHm_Chr2g0138581 RchiOBHm_Chr2g0160851 RchiOBHm_Chr4g0407411
rosa_laevigata RLG00000001652 RLG00000001872 RLG00000002037 RLG00000003076 RLG00000006419 RLG00000016771 RLG00000017383 RLG00000022851 RLG00000030563 RLG00000033869 RLG00000034176
rosa_multiflora Rmu_co8013424.1_g000001 Rmu_co8016716.1_g000001 Rmu_co8183472.1_g000001 Rmu_co8254047.1_g000001 Rmu_co8354891.1_g000001 Rmu_sc0000124.1_g000003 Rmu_sc0002132.1_g000027 Rmu_sc0003007.1_g000011 Rmu_sc0003221.1_g000096 Rmu_sc0003221.1_g000097 Rmu_sc0005119.1_g000004 Rmu_sc0008057.1_g000005 Rmu_sc0034532.1_g000001 Rmu_sc0036406.1_g000001 Rmu_ssc0000008.1_g000009
rosa_roxburghii Rroxscaffold_1G00030520 Rroxscaffold_2G00107360 Rroxscaffold_2G00153420 Rroxscaffold_5G00335750 Rroxscaffold_5G00351760 Rroxscaffold_5G00352080 Rroxscaffold_6G00419090
rosa_rugosa Rorug01G0341800 Rorug01G0341900 Rorug02G0180200 Rorug02G0180300 Rorug03G0186100 Rorug03G0186200 Rorug03G0284800 Rorug04G0104500 Rorug05G0246300 Rorug06G0108400 Rorug06G0471500 Rorug06G0510400
rosa_samantha Rh1AG159000 Rh1CG148200 Rh1CG189900 Rh2AG552800 Rh2BG473900 Rh2BG612100 Rh2BG612300 Rh2DG094500 Rh2DG482600 Rh3BG234000 Rh3CG320000 Rh4AG144200 Rh4BG127900 Rh4DG097300 Rh5AG128900 Rh5AG381200 Rh5BG363000 Rh5DG491900 Rh6AG048400 Rh6BG168100 Rh6CG005800 Rh6DG006000 Rh7AG255100 Rh7BG360600 Rh7CG271700 Rh7CG482300 Rh7DG451200
rosa_wichuraiana Rw4G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 206
AarI CACCTGC 1 cut(s) 203
Acc36I ACCTGC 1 cut(s) 203
AciI CCGC 2 cut(s) 48, 101
AclWI GGATC 2 cut(s) 83, 226
AcoI YGGCCR 1 cut(s) 187
AcsI RAATTY 1 cut(s) 374
AfaI GTAC 2 cut(s) 228, 255
AgsI TTSAA 2 cut(s) 129, 364
AluBI AGCT 2 cut(s) 181, 294
AluI AGCT 2 cut(s) 181, 294
Alw26I GTCTC 3 cut(s) 102, 388, 426
AlwI GGATC 2 cut(s) 83, 226
AoxI GGCC 2 cut(s) 187, 327
ApeKI GCWGC 1 cut(s) 399
ApoI RAATTY 1 cut(s) 374
AspS9I GGNCC 1 cut(s) 327
BalI TGGCCA 1 cut(s) 189
BbvI GCAGC 1 cut(s) 386
BccI CCATC 1 cut(s) 238
BcoDI GTCTC 3 cut(s) 102, 388, 426
BfaI CTAG 1 cut(s) 291
BfuAI ACCTGC 1 cut(s) 203
BisI GCNGC 1 cut(s) 400
BlsI GCNGC 1 cut(s) 401
BmgT120I GGNCC 1 cut(s) 327
BpuEI CTTGAG 1 cut(s) 260
BsaJI CCNNGG 1 cut(s) 190
BsaWI WCCGGW 1 cut(s) 91
BseDI CCNNGG 1 cut(s) 190
BseXI GCAGC 1 cut(s) 386
Bsh1285I CGRYCG 1 cut(s) 52
BshFI GGCC 2 cut(s) 189, 329
BsiEI CGRYCG 1 cut(s) 52
BsiSI CCGG 1 cut(s) 92
BsmAI GTCTC 3 cut(s) 102, 388, 426
BsnI GGCC 2 cut(s) 189, 329
Bsp1407I TGTACA 1 cut(s) 226
Bsp143I GATC 2 cut(s) 88, 218
BspACI CCGC 2 cut(s) 48, 101
BspANI GGCC 2 cut(s) 189, 329
BspMI ACCTGC 1 cut(s) 203
BspPI GGATC 2 cut(s) 83, 226
BspQI GCTCTTC 1 cut(s) 331
BsrGI TGTACA 1 cut(s) 226
BssECI CCNNGG 1 cut(s) 190
BssMI GATC 2 cut(s) 88, 218
BssT1I CCWWGG 1 cut(s) 190
Bst4CI ACNGT 2 cut(s) 302, 420
Bst6I CTCTTC 1 cut(s) 331
BstAUI TGTACA 1 cut(s) 226
BstC8I GCNNGC 1 cut(s) 198
BstDEI CTNAG 1 cut(s) 170
BstKTI GATC 2 cut(s) 91, 221
BstMAI GTCTC 3 cut(s) 102, 388, 426
BstMBI GATC 2 cut(s) 88, 218
BstMCI CGRYCG 1 cut(s) 52
BstMWI GCNNNNNNNGC 1 cut(s) 399
BstV1I GCAGC 1 cut(s) 386
BstX2I RGATCY 1 cut(s) 218
BstYI RGATCY 1 cut(s) 218
BsuRI GGCC 2 cut(s) 189, 329
BtsI GCAGTG 1 cut(s) 348
BtsIMutI CAGTG 1 cut(s) 348
BveI ACCTGC 1 cut(s) 203
Cac8I GCNNGC 1 cut(s) 198
Cfr13I GGNCC 1 cut(s) 327
Csp6I GTAC 2 cut(s) 227, 254
CviAII CATG 1 cut(s) 331
CviJI RGCY 6 cut(s) 28, 181, 189, 196, 294, 329
CviKI_1 RGCY 6 cut(s) 28, 181, 189, 196, 294, 329
CviQI GTAC 2 cut(s) 227, 254
DdeI CTNAG 1 cut(s) 170
DpnI GATC 2 cut(s) 90, 220
DpnII GATC 2 cut(s) 88, 218
EaeI YGGCCR 1 cut(s) 187
Eam1104I CTCTTC 1 cut(s) 331
EarI CTCTTC 1 cut(s) 331
EciI GGCGGA 1 cut(s) 90
Eco130I CCWWGG 1 cut(s) 190
Eco32I GATATC 1 cut(s) 73
EcoRV GATATC 1 cut(s) 73
EcoT14I CCWWGG 1 cut(s) 190
ErhI CCWWGG 1 cut(s) 190
FaeI CATG 1 cut(s) 334
FaiI YATR 7 cut(s) 156, 206, 278, 332, 405, 416, 433
FatI CATG 1 cut(s) 330
Fnu4HI GCNGC 1 cut(s) 400
Fsp4HI GCNGC 1 cut(s) 400
FspBI CTAG 1 cut(s) 291
GluI GCNGC 1 cut(s) 400
HaeIII GGCC 2 cut(s) 189, 329
HapII CCGG 1 cut(s) 92
Hin1II CATG 1 cut(s) 334
HincII GTYRAC 1 cut(s) 305
HindII GTYRAC 1 cut(s) 305
HinfI GANTC 1 cut(s) 22
HpaII CCGG 1 cut(s) 92
Hpy166II GTNNAC 1 cut(s) 305
Hpy188I TCNGA 1 cut(s) 36
Hpy188III TCNNGA 3 cut(s) 42, 239, 370
Hpy8I GTNNAC 1 cut(s) 305
HpyAV CCTTC 1 cut(s) 16
HpyCH4III ACNGT 2 cut(s) 302, 420
HpyCH4IV ACGT 1 cut(s) 307
HpyCH4V TGCA 4 cut(s) 158, 200, 212, 380
HpyF10VI GCNNNNNNNGC 1 cut(s) 399
HpyF3I CTNAG 1 cut(s) 170
HpySE526I ACGT 1 cut(s) 307
Hsp92II CATG 1 cut(s) 334
Kzo9I GATC 2 cut(s) 88, 218
LguI GCTCTTC 1 cut(s) 331
LpnPI CCDG 7 cut(s) 27, 105, 119, 125, 171, 198, 355
Lsp1109I GCAGC 1 cut(s) 386
MaeI CTAG 1 cut(s) 291
MaeII ACGT 1 cut(s) 307
MaeIII GTNAC 1 cut(s) 286
MalI GATC 2 cut(s) 90, 220
MboI GATC 2 cut(s) 88, 218
MboII GAAGA 1 cut(s) 348
MflI RGATCY 1 cut(s) 218
MlsI TGGCCA 1 cut(s) 189
MluCI AATT 7 cut(s) 17, 65, 82, 129, 207, 364, 374
MluNI TGGCCA 1 cut(s) 189
MnlI CCTC 2 cut(s) 30, 154
Mox20I TGGCCA 1 cut(s) 189
MscI TGGCCA 1 cut(s) 189
Msp20I TGGCCA 1 cut(s) 189
MspI CCGG 1 cut(s) 92
MwoI GCNNNNNNNGC 1 cut(s) 399
NdeII GATC 2 cut(s) 88, 218
NlaIII CATG 1 cut(s) 334
NmuCI GTSAC 1 cut(s) 286
PaqCI CACCTGC 1 cut(s) 203
PciSI GCTCTTC 1 cut(s) 331
PfeI GAWTC 1 cut(s) 22
PkrI GCNGC 1 cut(s) 401
PsiI TTATAA 1 cut(s) 206
PspPI GGNCC 1 cut(s) 327
PsuI RGATCY 1 cut(s) 218
RsaI GTAC 2 cut(s) 228, 255
RsaNI GTAC 2 cut(s) 227, 254
SapI GCTCTTC 1 cut(s) 331
SatI GCNGC 1 cut(s) 400
Sau3AI GATC 2 cut(s) 88, 218
Sau96I GGNCC 1 cut(s) 327
SetI ASST 6 cut(s) 41, 183, 217, 255, 296, 310
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse9I AATT 7 cut(s) 17, 65, 82, 129, 207, 364, 374
SsiI CCGC 2 cut(s) 48, 101
SspMI CTAG 1 cut(s) 291
StyI CCWWGG 1 cut(s) 190
TaaI ACNGT 2 cut(s) 302, 420
TaiI ACGT 1 cut(s) 310
TaqI TCGA 1 cut(s) 87
TasI AATT 7 cut(s) 17, 65, 82, 129, 207, 364, 374
TatI WGTACW 1 cut(s) 226
TfiI GAWTC 1 cut(s) 22
TscAI CASTG 1 cut(s) 348
TseFI GTSAC 1 cut(s) 286
TseI GCWGC 1 cut(s) 399
Tsp45I GTSAC 1 cut(s) 286
TspRI CASTG 1 cut(s) 348
XapI RAATTY 1 cut(s) 374
XspI CTAG 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.