RLG00000001872

Plasma membrane ATPase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000545
Physical Location & Seq
Forward (+)
22306862 .. 22308505
1644 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001872

Sequence Viewer

Length: 321 bp
ATGGCCGCCATCCTCATGGAGAGGAGATCATCTACCATCAGACTTGTAGATCTGATTGGGAGGTGGATTGAGGAGGATGCTTTCGTCCTTGTTCCTGGTGATATAAATCATATAGTCAGCATTGAGCTTGGGGATATTATTCCAGCAGATGCTCGTCTCCTCGACGATGATCCACTGAAAATTGATCAGTCTGCACTTATCGGTGAGTCACTTTTTGTGACCAAAGGCCCTGGTGACAGTGTGTATTCGGGCTCTACATGCAAACAAGGAGAGATTGAAGCTGTGGTGATTGCCACTGATGTTCATACCTTGTTCGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

107

Amino Acids

11.43

Weight (kDa)

4.32

Isoelectric Point (pI)

57.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
E1-E2_ATPase PF00122 20 - 106 1.7e-17 P-type ATPase actuator domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000545)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36571
pyrus_communis pycom02g01560 pycom08g10820 pycom09g05820 pycom13g21850 pycom14g16010
rosa_chinensis RchiOBHm_Chr2g0094861 RchiOBHm_Chr2g0124911 RchiOBHm_Chr2g0138581 RchiOBHm_Chr2g0160851 RchiOBHm_Chr4g0407411
rosa_laevigata RLG00000001652 RLG00000001872 RLG00000002037 RLG00000003076 RLG00000006419 RLG00000016771 RLG00000017383 RLG00000022851 RLG00000030563 RLG00000033869 RLG00000034176
rosa_multiflora Rmu_co8013424.1_g000001 Rmu_co8016716.1_g000001 Rmu_co8183472.1_g000001 Rmu_co8254047.1_g000001 Rmu_co8354891.1_g000001 Rmu_sc0000124.1_g000003 Rmu_sc0002132.1_g000027 Rmu_sc0003007.1_g000011 Rmu_sc0003221.1_g000096 Rmu_sc0003221.1_g000097 Rmu_sc0005119.1_g000004 Rmu_sc0008057.1_g000005 Rmu_sc0034532.1_g000001 Rmu_sc0036406.1_g000001 Rmu_ssc0000008.1_g000009
rosa_roxburghii Rroxscaffold_1G00030520 Rroxscaffold_2G00107360 Rroxscaffold_2G00153420 Rroxscaffold_5G00335750 Rroxscaffold_5G00351760 Rroxscaffold_5G00352080 Rroxscaffold_6G00419090
rosa_rugosa Rorug01G0341800 Rorug01G0341900 Rorug02G0180200 Rorug02G0180300 Rorug03G0186100 Rorug03G0186200 Rorug03G0284800 Rorug04G0104500 Rorug05G0246300 Rorug06G0108400 Rorug06G0471500 Rorug06G0510400
rosa_samantha Rh1AG159000 Rh1CG148200 Rh1CG189900 Rh2AG552800 Rh2BG473900 Rh2BG612100 Rh2BG612300 Rh2DG094500 Rh2DG482600 Rh3BG234000 Rh3CG320000 Rh4AG144200 Rh4BG127900 Rh4DG097300 Rh5AG128900 Rh5AG381200 Rh5BG363000 Rh5DG491900 Rh6AG048400 Rh6BG168100 Rh6CG005800 Rh6DG006000 Rh7AG255100 Rh7BG360600 Rh7CG271700 Rh7CG482300 Rh7DG451200
rosa_wichuraiana Rw4G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 6
AclWI GGATC 1 cut(s) 164
AcoI YGGCCR 1 cut(s) 3
AgsI TTSAA 1 cut(s) 278
AjnI CCWGG 2 cut(s) 94, 229
AluBI AGCT 2 cut(s) 127, 281
AluI AGCT 2 cut(s) 127, 281
Alw26I GTCTC 1 cut(s) 161
AlwI GGATC 1 cut(s) 164
AoxI GGCC 2 cut(s) 3, 226
AspS9I GGNCC 1 cut(s) 227
AsuHPI GGTGA 4 cut(s) 110, 215, 245, 298
BanII GRGCYC 1 cut(s) 254
BccI CCATC 2 cut(s) 17, 44
BciT130I CCWGG 2 cut(s) 96, 231
BclI TGATCA 1 cut(s) 184
BcoDI GTCTC 1 cut(s) 161
BfaI CTAG 1 cut(s) 319
BglII AGATCT 1 cut(s) 49
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 2 cut(s) 96, 231
BmgT120I GGNCC 1 cut(s) 227
BmrFI CCNGG 2 cut(s) 96, 231
BmsI GCATC 2 cut(s) 67, 139
BsaBI GATNNNNATC 1 cut(s) 105
BsaJI CCNNGG 1 cut(s) 229
Bse8I GATNNNNATC 1 cut(s) 105
BseBI CCWGG 2 cut(s) 96, 231
BseDI CCNNGG 1 cut(s) 229
BseGI GGATG 2 cut(s) 9, 82
BseJI GATNNNNATC 1 cut(s) 105
BseRI GAGGAG 3 cut(s) 37, 86, 149
BsgI GTGCAG 1 cut(s) 177
BshFI GGCC 2 cut(s) 5, 228
BsmAI GTCTC 1 cut(s) 161
BsmBI CGTCTC 1 cut(s) 161
BsnI GGCC 2 cut(s) 5, 228
Bsp1286I GDGCHC 1 cut(s) 254
Bsp143I GATC 4 cut(s) 26, 49, 169, 184
BspACI CCGC 1 cut(s) 6
BspANI GGCC 2 cut(s) 5, 228
BspPI GGATC 1 cut(s) 164
BssECI CCNNGG 1 cut(s) 229
BssMI GATC 4 cut(s) 26, 49, 169, 184
Bst2UI CCWGG 2 cut(s) 96, 231
Bst4CI ACNGT 1 cut(s) 239
BstF5I GGATG 2 cut(s) 9, 82
BstKTI GATC 4 cut(s) 29, 52, 172, 187
BstMAI GTCTC 1 cut(s) 161
BstMBI GATC 4 cut(s) 26, 49, 169, 184
BstMWI GCNNNNNNNGC 1 cut(s) 258
BstNI CCWGG 2 cut(s) 96, 231
BstNSI RCATGY 1 cut(s) 261
BstSCI CCNGG 2 cut(s) 94, 229
BstX2I RGATCY 1 cut(s) 49
BstXI CCANNNNNNTGG 1 cut(s) 16
BstYI RGATCY 1 cut(s) 49
BsuRI GGCC 2 cut(s) 5, 228
BtsCI GGATG 2 cut(s) 9, 82
BtsIMutI CAGTG 3 cut(s) 173, 244, 294
Cfr13I GGNCC 1 cut(s) 227
CviAII CATG 2 cut(s) 16, 258
CviJI RGCY 6 cut(s) 5, 127, 228, 252, 281, 318
CviKI_1 RGCY 6 cut(s) 5, 127, 228, 252, 281, 318
DpnI GATC 4 cut(s) 28, 51, 171, 186
DpnII GATC 4 cut(s) 26, 49, 169, 184
EaeI YGGCCR 1 cut(s) 3
Eco24I GRGCYC 1 cut(s) 254
EcoO109I RGGNCCY 1 cut(s) 227
EcoRII CCWGG 2 cut(s) 94, 229
EcoT38I GRGCYC 1 cut(s) 254
Esp3I CGTCTC 1 cut(s) 161
FaeI CATG 2 cut(s) 19, 261
FaiI YATR 6 cut(s) 17, 104, 111, 113, 259, 306
FatI CATG 2 cut(s) 15, 257
FbaI TGATCA 1 cut(s) 184
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 1 cut(s) 89
FriOI GRGCYC 1 cut(s) 254
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 1 cut(s) 319
GluI GCNGC 1 cut(s) 6
HaeIII GGCC 2 cut(s) 5, 228
Hin1II CATG 2 cut(s) 19, 261
HinfI GANTC 1 cut(s) 206
HphI GGTGA 4 cut(s) 110, 215, 245, 298
Hpy188I TCNGA 2 cut(s) 41, 54
Hpy99I CGWCG 1 cut(s) 167
HpyCH4III ACNGT 1 cut(s) 239
HpyCH4V TGCA 2 cut(s) 194, 261
HpyF10VI GCNNNNNNNGC 1 cut(s) 258
Hsp92II CATG 2 cut(s) 19, 261
Ksp22I TGATCA 1 cut(s) 184
Kzo9I GATC 4 cut(s) 26, 49, 169, 184
LpnPI CCDG 5 cut(s) 81, 108, 156, 216, 243
LweI GCATC 2 cut(s) 67, 139
MaeI CTAG 1 cut(s) 319
MaeIII GTNAC 3 cut(s) 207, 217, 233
MalI GATC 4 cut(s) 28, 51, 171, 186
MboI GATC 4 cut(s) 26, 49, 169, 184
MflI RGATCY 1 cut(s) 49
MhlI GDGCHC 1 cut(s) 254
MluCI AATT 1 cut(s) 180
MlyI GAGTC 1 cut(s) 215
MnlI CCTC 6 cut(s) 15, 23, 54, 64, 67, 170
MslI CAYNNNNRTG 1 cut(s) 14
MspR9I CCNGG 2 cut(s) 96, 231
MvaI CCWGG 2 cut(s) 96, 231
MwoI GCNNNNNNNGC 1 cut(s) 258
NdeII GATC 4 cut(s) 26, 49, 169, 184
NlaIII CATG 2 cut(s) 19, 261
NmuCI GTSAC 3 cut(s) 207, 217, 233
NspI RCATGY 1 cut(s) 261
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 1 cut(s) 214
PpsI GAGTC 1 cut(s) 214
Psp6I CCWGG 2 cut(s) 94, 229
PspGI CCWGG 2 cut(s) 94, 229
PspPI GGNCC 1 cut(s) 227
PsuI RGATCY 1 cut(s) 49
RseI CAYNNNNRTG 1 cut(s) 14
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 4 cut(s) 26, 49, 169, 184
Sau96I GGNCC 1 cut(s) 227
SchI GAGTC 1 cut(s) 215
ScrFI CCNGG 2 cut(s) 96, 231
SduI GDGCHC 1 cut(s) 254
SetI ASST 4 cut(s) 65, 129, 283, 311
SfaNI GCATC 2 cut(s) 67, 139
SmiMI CAYNNNNRTG 1 cut(s) 14
Sse9I AATT 1 cut(s) 180
SsiI CCGC 1 cut(s) 6
SspMI CTAG 1 cut(s) 319
StyD4I CCNGG 2 cut(s) 94, 229
TaaI ACNGT 1 cut(s) 239
TaqI TCGA 1 cut(s) 162
TasI AATT 1 cut(s) 180
TauI GCSGC 1 cut(s) 8
TscAI CASTG 3 cut(s) 180, 244, 301
TseFI GTSAC 3 cut(s) 207, 217, 233
Tsp45I GTSAC 3 cut(s) 207, 217, 233
TspDTI ATGAA 1 cut(s) 293
TspRI CASTG 3 cut(s) 180, 244, 301
XceI RCATGY 1 cut(s) 261
XspI CTAG 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.