Rmu_sc0002132.1_g000027

Plasma membrane ATPase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002132.1
OG0000545
Physical Location & Seq
Reverse (-)
100421 .. 103262
2842 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002132.1_g000027.1.cds

Sequence Viewer

Length: 567 bp
atggcgaagaacgacgcgtccttcggatcagtgggttctggaacttggaattggaatcaggtaatgtacgacgcggctgtggattgggacaacacctcagattgtcgctctgattgtggatacaaggattttatagaggaaaacaatgcaggcaatgctgctgctgctcttatggctcagtcggccccaaaagcgaaggttttacgtgacagaaaatggacagaaaaagatgcggctagattggttcctggagacataattagcatcaaacttggtgatatcgttctatctggtgcacgccttcttgaaggtgatcctttaaagattgatcagcttttaacatcaattggatacttttgcatctattcaattgttgttggaatgtttattggaattcagaggagggagagtggtggtgctgctgctgttattgcaaacctactcgtcatcctaattggtgggatccctattgctatgccaactgttctttccattatgatgaccagtggttcacatcgcttgtctcagccggaacatgagctaatcttgagtctcgagtcaggataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

188

Amino Acids

20.15

Weight (kDa)

4.99

Isoelectric Point (pI)

28.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000545)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36571
pyrus_communis pycom02g01560 pycom08g10820 pycom09g05820 pycom13g21850 pycom14g16010
rosa_chinensis RchiOBHm_Chr2g0094861 RchiOBHm_Chr2g0124911 RchiOBHm_Chr2g0138581 RchiOBHm_Chr2g0160851 RchiOBHm_Chr4g0407411
rosa_laevigata RLG00000001652 RLG00000001872 RLG00000002037 RLG00000003076 RLG00000006419 RLG00000016771 RLG00000017383 RLG00000022851 RLG00000030563 RLG00000033869 RLG00000034176
rosa_multiflora Rmu_co8013424.1_g000001 Rmu_co8016716.1_g000001 Rmu_co8183472.1_g000001 Rmu_co8254047.1_g000001 Rmu_co8354891.1_g000001 Rmu_sc0000124.1_g000003 Rmu_sc0002132.1_g000027 Rmu_sc0003007.1_g000011 Rmu_sc0003221.1_g000096 Rmu_sc0003221.1_g000097 Rmu_sc0005119.1_g000004 Rmu_sc0008057.1_g000005 Rmu_sc0034532.1_g000001 Rmu_sc0036406.1_g000001 Rmu_ssc0000008.1_g000009
rosa_roxburghii Rroxscaffold_1G00030520 Rroxscaffold_2G00107360 Rroxscaffold_2G00153420 Rroxscaffold_5G00335750 Rroxscaffold_5G00351760 Rroxscaffold_5G00352080 Rroxscaffold_6G00419090
rosa_rugosa Rorug01G0341800 Rorug01G0341900 Rorug02G0180200 Rorug02G0180300 Rorug03G0186100 Rorug03G0186200 Rorug03G0284800 Rorug04G0104500 Rorug05G0246300 Rorug06G0108400 Rorug06G0471500 Rorug06G0510400
rosa_samantha Rh1AG159000 Rh1CG148200 Rh1CG189900 Rh2AG552800 Rh2BG473900 Rh2BG612100 Rh2BG612300 Rh2DG094500 Rh2DG482600 Rh3BG234000 Rh3CG320000 Rh4AG144200 Rh4BG127900 Rh4DG097300 Rh5AG128900 Rh5AG381200 Rh5BG363000 Rh5DG491900 Rh6AG048400 Rh6BG168100 Rh6CG005800 Rh6DG006000 Rh7AG255100 Rh7BG360600 Rh7CG271700 Rh7CG482300 Rh7DG451200
rosa_wichuraiana Rw4G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 17, 74
AciI CCGC 2 cut(s) 74, 233
AclWI GGATC 4 cut(s) 34, 308, 457, 470
AcsI RAATTY 1 cut(s) 393
AfaI GTAC 1 cut(s) 68
AflIII ACRYGT 1 cut(s) 15
AgsI TTSAA 2 cut(s) 308, 369
AjnI CCWGG 1 cut(s) 247
AjuI GAANNNNNNNTTGG 4 cut(s) 34, 66, 472, 504
AloI GAACNNNNNNTCC 1 cut(s) 34
AluBI AGCT 2 cut(s) 334, 541
AluI AGCT 2 cut(s) 334, 541
Alw21I GWGCWC 1 cut(s) 298
Alw26I GTCTC 3 cut(s) 246, 528, 557
Alw44I GTGCAC 1 cut(s) 294
AlwI GGATC 4 cut(s) 34, 308, 457, 470
Ama87I CYCGRG 1 cut(s) 554
AoxI GGCC 1 cut(s) 183
ApaLI GTGCAC 1 cut(s) 294
ApeKI GCWGC 5 cut(s) 158, 161, 164, 419, 422
ApoI RAATTY 1 cut(s) 393
ArsI GACNNNNNNTTYG 1 cut(s) 37
AspS9I GGNCC 1 cut(s) 184
AsuHPI GGTGA 2 cut(s) 287, 323
AvaI CYCGRG 1 cut(s) 554
BaeGI GKGCMC 1 cut(s) 298
BamHI GGATCC 1 cut(s) 462
Bbv12I GWGCWC 1 cut(s) 298
BbvI GCAGC 5 cut(s) 145, 148, 151, 406, 409
BciT130I CCWGG 1 cut(s) 249
BciVI GTATCC 2 cut(s) 113, 344
BclI TGATCA 1 cut(s) 328
BcoDI GTCTC 3 cut(s) 246, 528, 557
BfaI CTAG 1 cut(s) 237
BfuI GTATCC 2 cut(s) 113, 344
BisI GCNGC 7 cut(s) 75, 159, 162, 165, 234, 420, 423
BlsI GCNGC 7 cut(s) 76, 160, 163, 166, 235, 421, 424
Bme1390I CCNGG 1 cut(s) 249
BmeT110I CYCGRG 1 cut(s) 554
BmgT120I GGNCC 1 cut(s) 184
BmiI GGNNCC 3 cut(s) 186, 246, 464
BmrFI CCNGG 1 cut(s) 249
BmsI GCATC 3 cut(s) 220, 273, 369
BpmI CTGGAG 1 cut(s) 270
BsaAI YACGTR 1 cut(s) 206
BsaXI ACNNNNNCTCC 2 cut(s) 394, 424
Bse1I ACTGG 1 cut(s) 504
Bse3DI GCAATG 1 cut(s) 160
BseBI CCWGG 1 cut(s) 249
BseGI GGATG 1 cut(s) 447
BseMI GCAATG 1 cut(s) 160
BseMII CTCAG 3 cut(s) 111, 191, 539
BseNI ACTGG 1 cut(s) 504
BseRI GAGGAG 1 cut(s) 415
BseSI GKGCMC 1 cut(s) 298
BseXI GCAGC 5 cut(s) 145, 148, 151, 406, 409
Bsh1236I CGCG 2 cut(s) 17, 74
BshFI GGCC 1 cut(s) 185
BsiHKAI GWGCWC 1 cut(s) 298
BsiHKCI CYCGRG 1 cut(s) 554
BsiSI CCGG 1 cut(s) 530
BslFI GGGAC 1 cut(s) 101
BsmAI GTCTC 3 cut(s) 246, 528, 557
BsmFI GGGAC 1 cut(s) 101
BsnI GGCC 1 cut(s) 185
BsoBI CYCGRG 1 cut(s) 554
Bsp1286I GDGCHC 1 cut(s) 298
Bsp143I GATC 4 cut(s) 26, 313, 328, 462
BspACI CCGC 2 cut(s) 74, 233
BspANI GGCC 1 cut(s) 185
BspCNI CTCAG 3 cut(s) 110, 190, 538
BspFNI CGCG 2 cut(s) 17, 74
BspLI GGNNCC 3 cut(s) 186, 246, 464
BspPI GGATC 4 cut(s) 34, 308, 457, 470
BsrDI GCAATG 1 cut(s) 160
BsrI ACTGG 1 cut(s) 504
BssMI GATC 4 cut(s) 26, 313, 328, 462
Bst2UI CCWGG 1 cut(s) 249
Bst4CI ACNGT 1 cut(s) 484
BstAPI GCANNNNNTGC 1 cut(s) 155
BstBAI YACGTR 1 cut(s) 206
BstC8I GCNNGC 2 cut(s) 151, 298
BstDEI CTNAG 3 cut(s) 97, 177, 525
BstF5I GGATG 1 cut(s) 447
BstFNI CGCG 2 cut(s) 17, 74
BstKTI GATC 4 cut(s) 29, 316, 331, 465
BstMAI GTCTC 3 cut(s) 246, 528, 557
BstMBI GATC 4 cut(s) 26, 313, 328, 462
BstMWI GCNNNNNNNGC 6 cut(s) 155, 164, 173, 182, 191, 431
BstNI CCWGG 1 cut(s) 249
BstSCI CCNGG 1 cut(s) 247
BstSLI GKGCMC 1 cut(s) 298
BstUI CGCG 2 cut(s) 17, 74
BstV1I GCAGC 5 cut(s) 145, 148, 151, 406, 409
BstX2I RGATCY 1 cut(s) 462
BstYI RGATCY 1 cut(s) 462
BsuI GTATCC 2 cut(s) 113, 344
BsuRI GGCC 1 cut(s) 185
BtgZI GCGATG 1 cut(s) 500
BtsCI GGATG 1 cut(s) 447
BtsIMutI CAGTG 2 cut(s) 36, 511
Cac8I GCNNGC 2 cut(s) 151, 298
Cfr13I GGNCC 1 cut(s) 184
CseI GACGC 3 cut(s) 6, 23, 80
Csp6I GTAC 1 cut(s) 67
CviAII CATG 1 cut(s) 536
CviJI RGCY 7 cut(s) 77, 176, 185, 236, 334, 529, 541
CviKI_1 RGCY 7 cut(s) 77, 176, 185, 236, 334, 529, 541
CviQI GTAC 1 cut(s) 67
DdeI CTNAG 3 cut(s) 97, 177, 525
DpnI GATC 4 cut(s) 28, 315, 330, 464
DpnII GATC 4 cut(s) 26, 313, 328, 462
DraI TTTAAA 1 cut(s) 321
Eco32I GATATC 1 cut(s) 280
Eco88I CYCGRG 1 cut(s) 554
EcoRI GAATTC 1 cut(s) 393
EcoRII CCWGG 1 cut(s) 247
EcoRV GATATC 1 cut(s) 280
FaeI CATG 1 cut(s) 539
FaiI YATR 6 cut(s) 134, 173, 257, 476, 497, 537
FaqI GGGAC 1 cut(s) 101
FatI CATG 1 cut(s) 535
FbaI TGATCA 1 cut(s) 328
Fnu4HI GCNGC 7 cut(s) 75, 159, 162, 165, 234, 420, 423
FokI GGATG 1 cut(s) 434
Fsp4HI GCNGC 7 cut(s) 75, 159, 162, 165, 234, 420, 423
FspBI CTAG 1 cut(s) 237
GluI GCNGC 7 cut(s) 75, 159, 162, 165, 234, 420, 423
GsuI CTGGAG 1 cut(s) 270
HaeIII GGCC 1 cut(s) 185
HapII CCGG 1 cut(s) 530
HgaI GACGC 3 cut(s) 6, 23, 80
Hin1II CATG 1 cut(s) 539
HinfI GANTC 3 cut(s) 55, 550, 557
HpaII CCGG 1 cut(s) 530
HphI GGTGA 2 cut(s) 287, 323
Hpy166II GTNNAC 2 cut(s) 296, 512
Hpy188I TCNGA 4 cut(s) 26, 100, 112, 399
Hpy188III TCNNGA 5 cut(s) 39, 305, 547, 554, 561
Hpy8I GTNNAC 2 cut(s) 296, 512
Hpy99I CGWCG 2 cut(s) 17, 74
HpyAV CCTTC 4 cut(s) 31, 190, 302, 311
HpyCH4III ACNGT 1 cut(s) 484
HpyCH4IV ACGT 1 cut(s) 205
HpyCH4V TGCA 4 cut(s) 149, 296, 360, 434
HpyF10VI GCNNNNNNNGC 6 cut(s) 155, 164, 173, 182, 191, 431
HpyF3I CTNAG 3 cut(s) 97, 177, 525
HpySE526I ACGT 1 cut(s) 205
Hsp92II CATG 1 cut(s) 539
Ksp22I TGATCA 1 cut(s) 328
Kzo9I GATC 4 cut(s) 26, 313, 328, 462
LpnPI CCDG 9 cut(s) 24, 44, 135, 234, 261, 276, 517, 543, 546
Lsp1109I GCAGC 5 cut(s) 145, 148, 151, 406, 409
LweI GCATC 3 cut(s) 220, 273, 369
MaeI CTAG 1 cut(s) 237
MaeII ACGT 1 cut(s) 205
MaeIII GTNAC 1 cut(s) 206
MalI GATC 4 cut(s) 28, 315, 330, 464
MboI GATC 4 cut(s) 26, 313, 328, 462
MboII GAAGA 1 cut(s) 19
MfeI CAATTG 2 cut(s) 345, 369
MflI RGATCY 1 cut(s) 462
MhlI GDGCHC 1 cut(s) 298
MluCI AATT 6 cut(s) 49, 258, 345, 369, 393, 453
MluI ACGCGT 1 cut(s) 15
MlyI GAGTC 2 cut(s) 559, 566
MmeI TCCRAC 1 cut(s) 358
MnlI CCTC 4 cut(s) 106, 130, 393, 396
MseI TTAA 2 cut(s) 320, 338
MslI CAYNNNNRTG 1 cut(s) 497
MspI CCGG 1 cut(s) 530
MspR9I CCNGG 1 cut(s) 249
MunI CAATTG 2 cut(s) 345, 369
MvaI CCWGG 1 cut(s) 249
MvnI CGCG 2 cut(s) 17, 74
MwoI GCNNNNNNNGC 6 cut(s) 155, 164, 173, 182, 191, 431
NdeII GATC 4 cut(s) 26, 313, 328, 462
NlaIII CATG 1 cut(s) 539
NlaIV GGNNCC 3 cut(s) 186, 246, 464
NmuCI GTSAC 1 cut(s) 206
PaeR7I CTCGAG 1 cut(s) 554
PfeI GAWTC 1 cut(s) 55
PfoI TCCNGGA 1 cut(s) 247
PkrI GCNGC 7 cut(s) 76, 160, 163, 166, 235, 421, 424
PleI GAGTC 2 cut(s) 558, 565
PpsI GAGTC 2 cut(s) 558, 565
Ppu21I YACGTR 1 cut(s) 206
Psp6I CCWGG 1 cut(s) 247
PspGI CCWGG 1 cut(s) 247
PspN4I GGNNCC 3 cut(s) 186, 246, 464
PspPI GGNCC 1 cut(s) 184
PsuI RGATCY 1 cut(s) 462
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
RseI CAYNNNNRTG 1 cut(s) 497
SaqAI TTAA 2 cut(s) 320, 338
SatI GCNGC 7 cut(s) 75, 159, 162, 165, 234, 420, 423
Sau3AI GATC 4 cut(s) 26, 313, 328, 462
Sau96I GGNCC 1 cut(s) 184
SchI GAGTC 2 cut(s) 559, 566
ScrFI CCNGG 1 cut(s) 249
SduI GDGCHC 1 cut(s) 298
SetI ASST 8 cut(s) 63, 98, 201, 208, 313, 336, 441, 543
SfaNI GCATC 3 cut(s) 220, 273, 369
Sfr274I CTCGAG 1 cut(s) 554
SlaI CTCGAG 1 cut(s) 554
SmiMI CAYNNNNRTG 1 cut(s) 497
SmlI CTYRAG 2 cut(s) 547, 554
SmoI CTYRAG 2 cut(s) 547, 554
Sse9I AATT 6 cut(s) 49, 258, 345, 369, 393, 453
SsiI CCGC 2 cut(s) 74, 233
SspMI CTAG 1 cut(s) 237
StyD4I CCNGG 1 cut(s) 247
TaaI ACNGT 1 cut(s) 484
TaiI ACGT 1 cut(s) 208
TaqI TCGA 1 cut(s) 555
TasI AATT 6 cut(s) 49, 258, 345, 369, 393, 453
TauI GCSGC 2 cut(s) 77, 236
TfiI GAWTC 1 cut(s) 55
Tru1I TTAA 2 cut(s) 320, 338
Tru9I TTAA 2 cut(s) 320, 338
TscAI CASTG 2 cut(s) 36, 511
TseFI GTSAC 1 cut(s) 206
TseI GCWGC 5 cut(s) 158, 161, 164, 419, 422
Tsp45I GTSAC 1 cut(s) 206
TspRI CASTG 2 cut(s) 36, 511
VneI GTGCAC 1 cut(s) 294
XapI RAATTY 1 cut(s) 393
XhoI CTCGAG 1 cut(s) 554
XspI CTAG 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.