Rmu_co8013424.1_g000001

Plasma membrane ATPase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8013424.1
OG0000545
Physical Location & Seq
Reverse (-)
1 .. 435
435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8013424.1_g000001.1.cds

Sequence Viewer

Length: 193 bp
atggctcggttggccccaaaagcgaaggtcttgcgtgatggaaaatggagtgaagaagatgctgctatattggttcctggagacataattagcatcaaacttggtgatattgttccagctgatgcacgtcttcttcttgaaggagatcctctgaagattgatcaggtaactcgatatatgaataatatgatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

64

Amino Acids

7.08

Weight (kDa)

5.16

Isoelectric Point (pI)

33.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000545)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36571
pyrus_communis pycom02g01560 pycom08g10820 pycom09g05820 pycom13g21850 pycom14g16010
rosa_chinensis RchiOBHm_Chr2g0094861 RchiOBHm_Chr2g0124911 RchiOBHm_Chr2g0138581 RchiOBHm_Chr2g0160851 RchiOBHm_Chr4g0407411
rosa_laevigata RLG00000001652 RLG00000001872 RLG00000002037 RLG00000003076 RLG00000006419 RLG00000016771 RLG00000017383 RLG00000022851 RLG00000030563 RLG00000033869 RLG00000034176
rosa_multiflora Rmu_co8013424.1_g000001 Rmu_co8016716.1_g000001 Rmu_co8183472.1_g000001 Rmu_co8254047.1_g000001 Rmu_co8354891.1_g000001 Rmu_sc0000124.1_g000003 Rmu_sc0002132.1_g000027 Rmu_sc0003007.1_g000011 Rmu_sc0003221.1_g000096 Rmu_sc0003221.1_g000097 Rmu_sc0005119.1_g000004 Rmu_sc0008057.1_g000005 Rmu_sc0034532.1_g000001 Rmu_sc0036406.1_g000001 Rmu_ssc0000008.1_g000009
rosa_roxburghii Rroxscaffold_1G00030520 Rroxscaffold_2G00107360 Rroxscaffold_2G00153420 Rroxscaffold_5G00335750 Rroxscaffold_5G00351760 Rroxscaffold_5G00352080 Rroxscaffold_6G00419090
rosa_rugosa Rorug01G0341800 Rorug01G0341900 Rorug02G0180200 Rorug02G0180300 Rorug03G0186100 Rorug03G0186200 Rorug03G0284800 Rorug04G0104500 Rorug05G0246300 Rorug06G0108400 Rorug06G0471500 Rorug06G0510400
rosa_samantha Rh1AG159000 Rh1CG148200 Rh1CG189900 Rh2AG552800 Rh2BG473900 Rh2BG612100 Rh2BG612300 Rh2DG094500 Rh2DG482600 Rh3BG234000 Rh3CG320000 Rh4AG144200 Rh4BG127900 Rh4DG097300 Rh5AG128900 Rh5AG381200 Rh5BG363000 Rh5DG491900 Rh6AG048400 Rh6BG168100 Rh6CG005800 Rh6DG006000 Rh7AG255100 Rh7BG360600 Rh7CG271700 Rh7CG482300 Rh7DG451200
rosa_wichuraiana Rw4G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 140
AcuI CTGAAG 1 cut(s) 173
AgsI TTSAA 1 cut(s) 140
AjiI CACGTC 1 cut(s) 128
AjnI CCWGG 1 cut(s) 76
AluBI AGCT 1 cut(s) 119
AluI AGCT 1 cut(s) 119
Alw26I GTCTC 1 cut(s) 75
AlwI GGATC 1 cut(s) 140
AoxI GGCC 1 cut(s) 12
ApeKI GCWGC 1 cut(s) 62
AspS9I GGNCC 1 cut(s) 13
AsuHPI GGTGA 1 cut(s) 116
BbsI GAAGAC 1 cut(s) 122
BbvI GCAGC 1 cut(s) 49
BccI CCATC 1 cut(s) 32
BcgI CGANNNNNNTGC 2 cut(s) 13, 47
BciT130I CCWGG 1 cut(s) 78
BclI TGATCA 1 cut(s) 160
BcoDI GTCTC 1 cut(s) 75
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
Bme1390I CCNGG 1 cut(s) 78
BmgBI CACGTC 1 cut(s) 128
BmgT120I GGNCC 1 cut(s) 13
BmiI GGNNCC 2 cut(s) 15, 75
BmrFI CCNGG 1 cut(s) 78
BmsI GCATC 3 cut(s) 49, 102, 112
BpiI GAAGAC 1 cut(s) 122
BpmI CTGGAG 1 cut(s) 99
BseBI CCWGG 1 cut(s) 78
BseXI GCAGC 1 cut(s) 49
BshFI GGCC 1 cut(s) 14
BsmAI GTCTC 1 cut(s) 75
BsnI GGCC 1 cut(s) 14
Bsp143I GATC 2 cut(s) 145, 160
BspANI GGCC 1 cut(s) 14
BspLI GGNNCC 2 cut(s) 15, 75
BspPI GGATC 1 cut(s) 140
BssMI GATC 2 cut(s) 145, 160
Bst2UI CCWGG 1 cut(s) 78
BstKTI GATC 2 cut(s) 148, 163
BstMAI GTCTC 1 cut(s) 75
BstMBI GATC 2 cut(s) 145, 160
BstMWI GCNNNNNNNGC 2 cut(s) 11, 20
BstNI CCWGG 1 cut(s) 78
BstSCI CCNGG 1 cut(s) 76
BstV1I GCAGC 1 cut(s) 49
BstV2I GAAGAC 1 cut(s) 122
BstX2I RGATCY 1 cut(s) 145
BstYI RGATCY 1 cut(s) 145
BsuRI GGCC 1 cut(s) 14
BtrI CACGTC 1 cut(s) 128
Cfr13I GGNCC 1 cut(s) 13
CviJI RGCY 3 cut(s) 5, 14, 119
CviKI_1 RGCY 3 cut(s) 5, 14, 119
DpnI GATC 2 cut(s) 147, 162
DpnII GATC 2 cut(s) 145, 160
Eco57I CTGAAG 1 cut(s) 173
EcoRII CCWGG 1 cut(s) 76
FaiI YATR 5 cut(s) 68, 86, 177, 179, 188
FbaI TGATCA 1 cut(s) 160
Fnu4HI GCNGC 1 cut(s) 63
Fsp4HI GCNGC 1 cut(s) 63
GluI GCNGC 1 cut(s) 63
GsuI CTGGAG 1 cut(s) 99
HaeIII GGCC 1 cut(s) 14
HphI GGTGA 1 cut(s) 116
Hpy188I TCNGA 1 cut(s) 153
Hpy188III TCNNGA 1 cut(s) 137
HpyAV CCTTC 2 cut(s) 19, 134
HpyCH4IV ACGT 1 cut(s) 127
HpyCH4V TGCA 1 cut(s) 125
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 20
HpySE526I ACGT 1 cut(s) 127
Ksp22I TGATCA 1 cut(s) 160
Kzo9I GATC 2 cut(s) 145, 160
LpnPI CCDG 4 cut(s) 63, 90, 129, 149
Lsp1109I GCAGC 1 cut(s) 49
LweI GCATC 3 cut(s) 49, 102, 112
MaeII ACGT 1 cut(s) 127
MaeIII GTNAC 1 cut(s) 166
MalI GATC 2 cut(s) 147, 162
MboI GATC 2 cut(s) 145, 160
MboII GAAGA 5 cut(s) 65, 68, 122, 125, 166
MflI RGATCY 1 cut(s) 145
MluCI AATT 1 cut(s) 87
MnlI CCTC 1 cut(s) 159
MspA1I CMGCKG 1 cut(s) 119
MspR9I CCNGG 1 cut(s) 78
MvaI CCWGG 1 cut(s) 78
MwoI GCNNNNNNNGC 2 cut(s) 11, 20
NdeII GATC 2 cut(s) 145, 160
NlaIV GGNNCC 2 cut(s) 15, 75
PfoI TCCNGGA 1 cut(s) 76
PkrI GCNGC 1 cut(s) 64
Psp6I CCWGG 1 cut(s) 76
PspGI CCWGG 1 cut(s) 76
PspN4I GGNNCC 2 cut(s) 15, 75
PspPI GGNCC 1 cut(s) 13
PsuI RGATCY 1 cut(s) 145
PvuII CAGCTG 1 cut(s) 119
SatI GCNGC 1 cut(s) 63
Sau3AI GATC 2 cut(s) 145, 160
Sau96I GGNCC 1 cut(s) 13
ScrFI CCNGG 1 cut(s) 78
SetI ASST 4 cut(s) 30, 121, 130, 168
SfaNI GCATC 3 cut(s) 49, 102, 112
Sse9I AATT 1 cut(s) 87
StyD4I CCNGG 1 cut(s) 76
TaiI ACGT 1 cut(s) 130
TaqI TCGA 1 cut(s) 172
TasI AATT 1 cut(s) 87
TseI GCWGC 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.