Rroxscaffold_5G00351760

Mitochondrial biogenesis AIM24

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000545
Physical Location & Seq
Reverse (-)
28314828 .. 28316850
2023 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00351760.1

Sequence Viewer

Length: 330 bp
ATGATTGCCTTTGCTGGTACTGATTTCAAGGCAAACAGTGGGAAAGGTATTTCAAGAGCTAACCTTGTGACAAAGCTTAATTTTATTGAAGTTGTACAAAAAAATCTTGAGATGGGCAAGGTACTATCTGTTGATGTTTCTTGTATAGCAGTTGTGACTAGCTACAACAGTCAACGTCCAAATCAAATACAATGGGCCATGAGAAGAGCAGTGTTTGATATAACTGAGATCCTCAAGCTAGTAAGAAGGCTTTACAGACTCATTCTAGATTCTGCAAAAGAGAGGGAAAATATTGAAGGGCGCACCGTTTTCTGCTTCTTCGGCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIM24

Protein Analysis

109

Amino Acids

12.37

Weight (kDa)

9.75

Isoelectric Point (pI)

32.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000545)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36571
pyrus_communis pycom02g01560 pycom08g10820 pycom09g05820 pycom13g21850 pycom14g16010
rosa_chinensis RchiOBHm_Chr2g0094861 RchiOBHm_Chr2g0124911 RchiOBHm_Chr2g0138581 RchiOBHm_Chr2g0160851 RchiOBHm_Chr4g0407411
rosa_laevigata RLG00000001652 RLG00000001872 RLG00000002037 RLG00000003076 RLG00000006419 RLG00000016771 RLG00000017383 RLG00000022851 RLG00000030563 RLG00000033869 RLG00000034176
rosa_multiflora Rmu_co8013424.1_g000001 Rmu_co8016716.1_g000001 Rmu_co8183472.1_g000001 Rmu_co8254047.1_g000001 Rmu_co8354891.1_g000001 Rmu_sc0000124.1_g000003 Rmu_sc0002132.1_g000027 Rmu_sc0003007.1_g000011 Rmu_sc0003221.1_g000096 Rmu_sc0003221.1_g000097 Rmu_sc0005119.1_g000004 Rmu_sc0008057.1_g000005 Rmu_sc0034532.1_g000001 Rmu_sc0036406.1_g000001 Rmu_ssc0000008.1_g000009
rosa_roxburghii Rroxscaffold_1G00030520 Rroxscaffold_2G00107360 Rroxscaffold_2G00153420 Rroxscaffold_5G00335750 Rroxscaffold_5G00351760 Rroxscaffold_5G00352080 Rroxscaffold_6G00419090
rosa_rugosa Rorug01G0341800 Rorug01G0341900 Rorug02G0180200 Rorug02G0180300 Rorug03G0186100 Rorug03G0186200 Rorug03G0284800 Rorug04G0104500 Rorug05G0246300 Rorug06G0108400 Rorug06G0471500 Rorug06G0510400
rosa_samantha Rh1AG159000 Rh1CG148200 Rh1CG189900 Rh2AG552800 Rh2BG473900 Rh2BG612100 Rh2BG612300 Rh2DG094500 Rh2DG482600 Rh3BG234000 Rh3CG320000 Rh4AG144200 Rh4BG127900 Rh4DG097300 Rh5AG128900 Rh5AG381200 Rh5BG363000 Rh5DG491900 Rh6AG048400 Rh6BG168100 Rh6CG005800 Rh6DG006000 Rh7AG255100 Rh7BG360600 Rh7CG271700 Rh7CG482300 Rh7DG451200
rosa_wichuraiana Rw4G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 223
AfaI GTAC 3 cut(s) 19, 96, 123
AgsI TTSAA 4 cut(s) 28, 54, 89, 296
AluBI AGCT 4 cut(s) 59, 76, 162, 238
AluI AGCT 4 cut(s) 59, 76, 162, 238
AlwI GGATC 1 cut(s) 223
AoxI GGCC 1 cut(s) 195
AspLEI GCGC 1 cut(s) 303
AspS9I GGNCC 1 cut(s) 195
BccI CCATC 1 cut(s) 106
BfaI CTAG 3 cut(s) 159, 239, 266
BmgT120I GGNCC 1 cut(s) 195
BpuEI CTTGAG 2 cut(s) 128, 218
BseMII CTCAG 1 cut(s) 216
BshFI GGCC 1 cut(s) 197
BsnI GGCC 1 cut(s) 197
Bsp1407I TGTACA 1 cut(s) 94
Bsp143I GATC 1 cut(s) 228
BspANI GGCC 1 cut(s) 197
BspCNI CTCAG 1 cut(s) 217
BspPI GGATC 1 cut(s) 223
BspQI GCTCTTC 1 cut(s) 199
BsrGI TGTACA 1 cut(s) 94
BssMI GATC 1 cut(s) 228
Bst4CI ACNGT 3 cut(s) 38, 170, 307
Bst6I CTCTTC 1 cut(s) 199
BstAUI TGTACA 1 cut(s) 94
BstDEI CTNAG 1 cut(s) 225
BstHHI GCGC 1 cut(s) 303
BstKTI GATC 1 cut(s) 231
BstMBI GATC 1 cut(s) 228
BstMWI GCNNNNNNNGC 1 cut(s) 321
BstX2I RGATCY 1 cut(s) 228
BstYI RGATCY 1 cut(s) 228
BsuRI GGCC 1 cut(s) 197
BtsI GCAGTG 1 cut(s) 216
BtsIMutI CAGTG 2 cut(s) 43, 216
CfoI GCGC 1 cut(s) 303
Cfr13I GGNCC 1 cut(s) 195
Csp6I GTAC 3 cut(s) 18, 95, 122
CviAII CATG 1 cut(s) 199
CviJI RGCY 6 cut(s) 59, 76, 162, 197, 238, 250
CviKI_1 RGCY 6 cut(s) 59, 76, 162, 197, 238, 250
CviQI GTAC 3 cut(s) 18, 95, 122
DdeI CTNAG 1 cut(s) 225
DpnI GATC 1 cut(s) 230
DpnII GATC 1 cut(s) 228
Eam1104I CTCTTC 1 cut(s) 199
EarI CTCTTC 1 cut(s) 199
FaeI CATG 1 cut(s) 202
FaiI YATR 5 cut(s) 146, 200, 221, 326, 328
FatI CATG 1 cut(s) 198
FspBI CTAG 3 cut(s) 159, 239, 266
GlaI GCGC 1 cut(s) 302
HaeIII GGCC 1 cut(s) 197
HhaI GCGC 1 cut(s) 303
Hin1II CATG 1 cut(s) 202
Hin6I GCGC 1 cut(s) 301
HinP1I GCGC 1 cut(s) 301
HincII GTYRAC 1 cut(s) 173
HindII GTYRAC 1 cut(s) 173
HindIII AAGCTT 1 cut(s) 74
HinfI GANTC 2 cut(s) 258, 269
Hpy166II GTNNAC 1 cut(s) 173
Hpy188III TCNNGA 3 cut(s) 54, 107, 266
Hpy8I GTNNAC 1 cut(s) 173
HpyAV CCTTC 2 cut(s) 240, 290
HpyCH4III ACNGT 3 cut(s) 38, 170, 307
HpyCH4IV ACGT 1 cut(s) 175
HpyCH4V TGCA 1 cut(s) 275
HpyF10VI GCNNNNNNNGC 1 cut(s) 321
HpyF3I CTNAG 1 cut(s) 225
HpySE526I ACGT 1 cut(s) 175
Hsp92II CATG 1 cut(s) 202
HspAI GCGC 1 cut(s) 301
Kzo9I GATC 1 cut(s) 228
LguI GCTCTTC 1 cut(s) 199
MaeI CTAG 3 cut(s) 159, 239, 266
MaeII ACGT 1 cut(s) 175
MaeIII GTNAC 2 cut(s) 67, 154
MalI GATC 1 cut(s) 230
MboI GATC 1 cut(s) 228
MboII GAAGA 2 cut(s) 216, 310
MflI RGATCY 1 cut(s) 228
MluCI AATT 1 cut(s) 79
MlyI GAGTC 1 cut(s) 252
MnlI CCTC 2 cut(s) 242, 276
MseI TTAA 1 cut(s) 78
MwoI GCNNNNNNNGC 1 cut(s) 321
NdeII GATC 1 cut(s) 228
NlaIII CATG 1 cut(s) 202
NmuCI GTSAC 2 cut(s) 67, 154
PciSI GCTCTTC 1 cut(s) 199
PfeI GAWTC 1 cut(s) 269
PleI GAGTC 1 cut(s) 252
PpsI GAGTC 1 cut(s) 252
PspPI GGNCC 1 cut(s) 195
PsuI RGATCY 1 cut(s) 228
RsaI GTAC 3 cut(s) 19, 96, 123
RsaNI GTAC 3 cut(s) 18, 95, 122
SapI GCTCTTC 1 cut(s) 199
SaqAI TTAA 1 cut(s) 78
Sau3AI GATC 1 cut(s) 228
Sau96I GGNCC 1 cut(s) 195
SchI GAGTC 1 cut(s) 252
SetI ASST 8 cut(s) 49, 61, 66, 78, 123, 164, 178, 240
SmlI CTYRAG 2 cut(s) 107, 233
SmoI CTYRAG 2 cut(s) 107, 233
Sse9I AATT 1 cut(s) 79
SspI AATATT 1 cut(s) 292
SspMI CTAG 3 cut(s) 159, 239, 266
TaaI ACNGT 3 cut(s) 38, 170, 307
TaiI ACGT 1 cut(s) 178
TasI AATT 1 cut(s) 79
TatI WGTACW 1 cut(s) 94
TfiI GAWTC 1 cut(s) 269
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TscAI CASTG 2 cut(s) 43, 216
TseFI GTSAC 2 cut(s) 67, 154
Tsp45I GTSAC 2 cut(s) 67, 154
TspRI CASTG 2 cut(s) 43, 216
XbaI TCTAGA 1 cut(s) 265
XspI CTAG 3 cut(s) 159, 239, 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.