Rroxscaffold_5G00335750

ATPase 11, plasma

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000545
Physical Location & Seq
Forward (+)
3141907 .. 3142703
797 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_5G00335750.1

Sequence Viewer

Length: 252 bp
ATGGCGGACGAGAAGCACGAAGTGCTTGACGCGGTCTTGAAGGAAACAATTGATTTGGAAAACATACCCATTGAGGAGGTGCTTGAGAATATGAGATGTAGCAAAGAGGGTCTCGGCGGTGAGGCTACTAAGGAAAGATTAGCCATTTTTGGACATAACAAGCTTGAGGAAAAGCGAGAAAGATTTTATGGTGATATATGCTTGAAGCGAGAATCTGATCCCCAAAGAGGGATGAATATTTACACGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

83

Amino Acids

9.61

Weight (kDa)

4.85

Isoelectric Point (pI)

51.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cation_ATPase_N PF00690 21 - 69 3.9e-07 Cation transporter/ATPase, N-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000545)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36571
pyrus_communis pycom02g01560 pycom08g10820 pycom09g05820 pycom13g21850 pycom14g16010
rosa_chinensis RchiOBHm_Chr2g0094861 RchiOBHm_Chr2g0124911 RchiOBHm_Chr2g0138581 RchiOBHm_Chr2g0160851 RchiOBHm_Chr4g0407411
rosa_laevigata RLG00000001652 RLG00000001872 RLG00000002037 RLG00000003076 RLG00000006419 RLG00000016771 RLG00000017383 RLG00000022851 RLG00000030563 RLG00000033869 RLG00000034176
rosa_multiflora Rmu_co8013424.1_g000001 Rmu_co8016716.1_g000001 Rmu_co8183472.1_g000001 Rmu_co8254047.1_g000001 Rmu_co8354891.1_g000001 Rmu_sc0000124.1_g000003 Rmu_sc0002132.1_g000027 Rmu_sc0003007.1_g000011 Rmu_sc0003221.1_g000096 Rmu_sc0003221.1_g000097 Rmu_sc0005119.1_g000004 Rmu_sc0008057.1_g000005 Rmu_sc0034532.1_g000001 Rmu_sc0036406.1_g000001 Rmu_ssc0000008.1_g000009
rosa_roxburghii Rroxscaffold_1G00030520 Rroxscaffold_2G00107360 Rroxscaffold_2G00153420 Rroxscaffold_5G00335750 Rroxscaffold_5G00351760 Rroxscaffold_5G00352080 Rroxscaffold_6G00419090
rosa_rugosa Rorug01G0341800 Rorug01G0341900 Rorug02G0180200 Rorug02G0180300 Rorug03G0186100 Rorug03G0186200 Rorug03G0284800 Rorug04G0104500 Rorug05G0246300 Rorug06G0108400 Rorug06G0471500 Rorug06G0510400
rosa_samantha Rh1AG159000 Rh1CG148200 Rh1CG189900 Rh2AG552800 Rh2BG473900 Rh2BG612100 Rh2BG612300 Rh2DG094500 Rh2DG482600 Rh3BG234000 Rh3CG320000 Rh4AG144200 Rh4BG127900 Rh4DG097300 Rh5AG128900 Rh5AG381200 Rh5BG363000 Rh5DG491900 Rh6AG048400 Rh6BG168100 Rh6CG005800 Rh6DG006000 Rh7AG255100 Rh7BG360600 Rh7CG271700 Rh7CG482300 Rh7DG451200
rosa_wichuraiana Rw4G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 32
AciI CCGC 3 cut(s) 5, 32, 117
AclWI GGATC 1 cut(s) 212
AdeI CACNNNGTG 1 cut(s) 22
AfiI CCNNNNNNNGG 2 cut(s) 227, 228
AgsI TTSAA 2 cut(s) 40, 205
AluBI AGCT 1 cut(s) 163
AluI AGCT 1 cut(s) 163
Alw26I GTCTC 1 cut(s) 116
AlwI GGATC 1 cut(s) 212
AsuHPI GGTGA 2 cut(s) 131, 203
BcoDI GTCTC 1 cut(s) 116
BpuEI CTTGAG 2 cut(s) 104, 185
BsaI GGTCTC 1 cut(s) 116
Bsc4I CCNNNNNNNGG 2 cut(s) 227, 228
BseGI GGATG 1 cut(s) 237
BseLI CCNNNNNNNGG 2 cut(s) 227, 228
BseRI GAGGAG 1 cut(s) 89
Bsh1236I CGCG 1 cut(s) 32
BslI CCNNNNNNNGG 2 cut(s) 227, 228
BsmAI GTCTC 1 cut(s) 116
Bso31I GGTCTC 1 cut(s) 116
Bsp143I GATC 1 cut(s) 217
BspACI CCGC 3 cut(s) 5, 32, 117
BspFNI CGCG 1 cut(s) 32
BspPI GGATC 1 cut(s) 212
BspTNI GGTCTC 1 cut(s) 116
BssMI GATC 1 cut(s) 217
BstAPI GCANNNNNTGC 1 cut(s) 22
BstDEI CTNAG 1 cut(s) 129
BstF5I GGATG 1 cut(s) 237
BstFNI CGCG 1 cut(s) 32
BstKTI GATC 1 cut(s) 220
BstMAI GTCTC 1 cut(s) 116
BstMBI GATC 1 cut(s) 217
BstMWI GCNNNNNNNGC 1 cut(s) 22
BstUI CGCG 1 cut(s) 32
BtsCI GGATG 1 cut(s) 237
CseI GACGC 1 cut(s) 38
CviJI RGCY 3 cut(s) 125, 143, 163
CviKI_1 RGCY 3 cut(s) 125, 143, 163
DdeI CTNAG 1 cut(s) 129
DpnI GATC 1 cut(s) 219
DpnII GATC 1 cut(s) 217
DraIII CACNNNGTG 1 cut(s) 22
EciI GGCGGA 1 cut(s) 20
Eco31I GGTCTC 1 cut(s) 116
FaiI YATR 6 cut(s) 65, 92, 156, 189, 197, 199
FokI GGATG 1 cut(s) 244
HgaI GACGC 1 cut(s) 38
HindIII AAGCTT 1 cut(s) 161
HinfI GANTC 1 cut(s) 212
HphI GGTGA 2 cut(s) 131, 203
Hpy188I TCNGA 1 cut(s) 217
Hpy188III TCNNGA 1 cut(s) 37
HpyAV CCTTC 1 cut(s) 34
HpyF10VI GCNNNNNNNGC 1 cut(s) 22
HpyF3I CTNAG 1 cut(s) 129
Kzo9I GATC 1 cut(s) 217
MalI GATC 1 cut(s) 219
MboI GATC 1 cut(s) 217
MfeI CAATTG 1 cut(s) 48
MluCI AATT 1 cut(s) 48
MnlI CCTC 6 cut(s) 67, 70, 100, 115, 160, 221
MunI CAATTG 1 cut(s) 48
MvnI CGCG 1 cut(s) 32
MwoI GCNNNNNNNGC 1 cut(s) 22
NdeII GATC 1 cut(s) 217
NmeAIII GCCGAG 1 cut(s) 93
PcsI WCGNNNNNNNCGW 1 cut(s) 15
PfeI GAWTC 1 cut(s) 212
PflFI GACNNNGTC 1 cut(s) 32
PsyI GACNNNGTC 1 cut(s) 32
Sau3AI GATC 1 cut(s) 217
SetI ASST 2 cut(s) 81, 165
SmlI CTYRAG 2 cut(s) 83, 164
SmoI CTYRAG 2 cut(s) 83, 164
Sse9I AATT 1 cut(s) 48
SsiI CCGC 3 cut(s) 5, 32, 117
SspI AATATT 1 cut(s) 238
TasI AATT 1 cut(s) 48
TfiI GAWTC 1 cut(s) 212
TspDTI ATGAA 1 cut(s) 248
Tth111I GACNNNGTC 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.