Rh5AG128900

ATPase 11, plasma

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000545
Physical Location & Seq
Reverse (-)
12728470 .. 12729819
1350 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG128900.1

Sequence Viewer

Length: 303 bp
ATGGCGGACCAGAAGCCTGAAGTGCTTGACGCGGTGCTGAAGGAAACAGTTGATTTGGAAAACATACCTATGGAGGAGGTGCTTGAGAATATGAGATGTAGCAAAGAGGGTCTCAGCAGTGAGGCTGCTGAGGAAAGATTTGCCATTTTTGGGCATAACAAGCTTGAGGAAAAGCAGGGGGAAACAAGCTTGATGGGAGAGAACATTTCTTTGTCTGCATCAGGGAAAAACTGGTGCATACAGCATGCTATAAATGCCAAGTGCAGTTGCTATTCTCCATCACTTCCATATTCTCTGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

100

Amino Acids

11.06

Weight (kDa)

4.65

Isoelectric Point (pI)

43.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cation_ATPase_N PF00690 21 - 62 3.4e-08 Cation transporter/ATPase, N-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000545)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36571
pyrus_communis pycom02g01560 pycom08g10820 pycom09g05820 pycom13g21850 pycom14g16010
rosa_chinensis RchiOBHm_Chr2g0094861 RchiOBHm_Chr2g0124911 RchiOBHm_Chr2g0138581 RchiOBHm_Chr2g0160851 RchiOBHm_Chr4g0407411
rosa_laevigata RLG00000001652 RLG00000001872 RLG00000002037 RLG00000003076 RLG00000006419 RLG00000016771 RLG00000017383 RLG00000022851 RLG00000030563 RLG00000033869 RLG00000034176
rosa_multiflora Rmu_co8013424.1_g000001 Rmu_co8016716.1_g000001 Rmu_co8183472.1_g000001 Rmu_co8254047.1_g000001 Rmu_co8354891.1_g000001 Rmu_sc0000124.1_g000003 Rmu_sc0002132.1_g000027 Rmu_sc0003007.1_g000011 Rmu_sc0003221.1_g000096 Rmu_sc0003221.1_g000097 Rmu_sc0005119.1_g000004 Rmu_sc0008057.1_g000005 Rmu_sc0034532.1_g000001 Rmu_sc0036406.1_g000001 Rmu_ssc0000008.1_g000009
rosa_roxburghii Rroxscaffold_1G00030520 Rroxscaffold_2G00107360 Rroxscaffold_2G00153420 Rroxscaffold_5G00335750 Rroxscaffold_5G00351760 Rroxscaffold_5G00352080 Rroxscaffold_6G00419090
rosa_rugosa Rorug01G0341800 Rorug01G0341900 Rorug02G0180200 Rorug02G0180300 Rorug03G0186100 Rorug03G0186200 Rorug03G0284800 Rorug04G0104500 Rorug05G0246300 Rorug06G0108400 Rorug06G0471500 Rorug06G0510400
rosa_samantha Rh1AG159000 Rh1CG148200 Rh1CG189900 Rh2AG552800 Rh2BG473900 Rh2BG612100 Rh2BG612300 Rh2DG094500 Rh2DG482600 Rh3BG234000 Rh3CG320000 Rh4AG144200 Rh4BG127900 Rh4DG097300 Rh5AG128900 Rh5AG381200 Rh5BG363000 Rh5DG491900 Rh6AG048400 Rh6BG168100 Rh6CG005800 Rh6DG006000 Rh7AG255100 Rh7BG360600 Rh7CG271700 Rh7CG482300 Rh7DG451200
rosa_wichuraiana Rw4G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 32
AciI CCGC 2 cut(s) 5, 32
AcuI CTGAAG 2 cut(s) 39, 59
AfiI CCNNNNNNNGG 1 cut(s) 150
AluBI AGCT 2 cut(s) 163, 189
AluI AGCT 2 cut(s) 163, 189
Alw26I GTCTC 1 cut(s) 116
ApeKI GCWGC 1 cut(s) 125
AspS9I GGNCC 1 cut(s) 7
AvaII GGWCC 1 cut(s) 7
BbvCI CCTCAGC 1 cut(s) 129
BbvI GCAGC 1 cut(s) 112
BccI CCATC 2 cut(s) 187, 286
BcoDI GTCTC 1 cut(s) 116
BisI GCNGC 1 cut(s) 126
BlsI GCNGC 1 cut(s) 127
Bme18I GGWCC 1 cut(s) 7
BmgT120I GGNCC 1 cut(s) 7
BmsI GCATC 1 cut(s) 227
Bpu10I CCTNAGC 1 cut(s) 129
BpuEI CTTGAG 2 cut(s) 104, 185
BsaI GGTCTC 1 cut(s) 116
Bsc4I CCNNNNNNNGG 1 cut(s) 150
Bse1I ACTGG 1 cut(s) 236
BseLI CCNNNNNNNGG 1 cut(s) 150
BseMII CTCAG 2 cut(s) 120, 127
BseNI ACTGG 1 cut(s) 236
BseRI GAGGAG 1 cut(s) 89
BseXI GCAGC 1 cut(s) 112
BsgI GTGCAG 1 cut(s) 283
Bsh1236I CGCG 1 cut(s) 32
BslI CCNNNNNNNGG 1 cut(s) 150
BsmAI GTCTC 1 cut(s) 116
Bso31I GGTCTC 1 cut(s) 116
BspACI CCGC 2 cut(s) 5, 32
BspCNI CTCAG 2 cut(s) 121, 126
BspFNI CGCG 1 cut(s) 32
BspTNI GGTCTC 1 cut(s) 116
BsrI ACTGG 1 cut(s) 236
Bst4CI ACNGT 1 cut(s) 49
BstC8I GCNNGC 1 cut(s) 246
BstDEI CTNAG 2 cut(s) 113, 129
BstFNI CGCG 1 cut(s) 32
BstMAI GTCTC 1 cut(s) 116
BstMWI GCNNNNNNNGC 3 cut(s) 22, 160, 254
BstNSI RCATGY 1 cut(s) 248
BstUI CGCG 1 cut(s) 32
BstV1I GCAGC 1 cut(s) 112
BtsI GCAGTG 1 cut(s) 124
BtsIMutI CAGTG 1 cut(s) 124
Cac8I GCNNGC 1 cut(s) 246
Cfr13I GGNCC 1 cut(s) 7
CseI GACGC 1 cut(s) 38
CviAII CATG 1 cut(s) 245
CviJI RGCY 4 cut(s) 16, 125, 163, 189
CviKI_1 RGCY 4 cut(s) 16, 125, 163, 189
DdeI CTNAG 2 cut(s) 113, 129
EciI GGCGGA 1 cut(s) 20
Eco31I GGTCTC 1 cut(s) 116
Eco47I GGWCC 1 cut(s) 7
Eco57I CTGAAG 2 cut(s) 39, 59
FaeI CATG 1 cut(s) 248
FaiI YATR 8 cut(s) 65, 71, 92, 156, 239, 246, 251, 289
FatI CATG 1 cut(s) 244
Fnu4HI GCNGC 1 cut(s) 126
Fsp4HI GCNGC 1 cut(s) 126
GluI GCNGC 1 cut(s) 126
HgaI GACGC 1 cut(s) 38
Hin1II CATG 1 cut(s) 248
HindIII AAGCTT 2 cut(s) 161, 187
HpyAV CCTTC 1 cut(s) 34
HpyCH4III ACNGT 1 cut(s) 49
HpyCH4V TGCA 3 cut(s) 218, 237, 264
HpyF10VI GCNNNNNNNGC 3 cut(s) 22, 160, 254
HpyF3I CTNAG 2 cut(s) 113, 129
Hsp92II CATG 1 cut(s) 248
LpnPI CCDG 6 cut(s) 23, 30, 161, 207, 217, 281
Lsp1109I GCAGC 1 cut(s) 112
LweI GCATC 1 cut(s) 227
MnlI CCTC 6 cut(s) 67, 70, 100, 115, 124, 160
MslI CAYNNNNRTG 1 cut(s) 68
MvnI CGCG 1 cut(s) 32
MwoI GCNNNNNNNGC 3 cut(s) 22, 160, 254
NlaIII CATG 1 cut(s) 248
NspI RCATGY 1 cut(s) 248
PaeI GCATGC 1 cut(s) 248
PkrI GCNGC 1 cut(s) 127
PspPI GGNCC 1 cut(s) 7
RseI CAYNNNNRTG 1 cut(s) 68
SatI GCNGC 1 cut(s) 126
Sau96I GGNCC 1 cut(s) 7
SetI ASST 4 cut(s) 70, 81, 165, 191
SfaNI GCATC 1 cut(s) 227
SinI GGWCC 1 cut(s) 7
SmiMI CAYNNNNRTG 1 cut(s) 68
SmlI CTYRAG 2 cut(s) 83, 164
SmoI CTYRAG 2 cut(s) 83, 164
SphI GCATGC 1 cut(s) 248
SsiI CCGC 2 cut(s) 5, 32
TaaI ACNGT 1 cut(s) 49
TscAI CASTG 1 cut(s) 124
TseI GCWGC 1 cut(s) 125
TspRI CASTG 1 cut(s) 124
VpaK11BI GGWCC 1 cut(s) 7
XceI RCATGY 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.