RLG00000030563

ATPase 11, plasma

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000545
Physical Location & Seq
Reverse (-)
63515197 .. 63516547
1351 bp
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UTR
Exon/CDS
Intron
RLM00000030563

Sequence Viewer

Length: 375 bp
ATGGCGGACGAGAAGCCTGAAGTGCTTGACGCGGTGCTGAAGGAAACAGTTGATTTGGAAAACATACCCATTGAGGAGATGCTTGAGAATATGAGATGTAGCAAAGAGGGTGGGAAGCCTCCTGACTGGCAAGATTTTGCGGTTATTATTACTCTGCTGGTCATCAACTCCACCATTAGTTTCATCAAGGAAAATAATGCGGGTAATGCTGCAGCAGCTCTCATGGCTCGTCTTGCTCCTAAGGCCAAGGGGGAAACAAGCTTGCTGGGAGAGAACATTTCTTTGTCTGCATCAGGGAAAAACGGGTGCATACAGCATGCTATAAATGCCAAGAGCAGTTGCTATTCTCCATCACTTCCATTTTCTCTAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

125

Amino Acids

13.25

Weight (kDa)

4.82

Isoelectric Point (pI)

32.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000545)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36571
pyrus_communis pycom02g01560 pycom08g10820 pycom09g05820 pycom13g21850 pycom14g16010
rosa_chinensis RchiOBHm_Chr2g0094861 RchiOBHm_Chr2g0124911 RchiOBHm_Chr2g0138581 RchiOBHm_Chr2g0160851 RchiOBHm_Chr4g0407411
rosa_laevigata RLG00000001652 RLG00000001872 RLG00000002037 RLG00000003076 RLG00000006419 RLG00000016771 RLG00000017383 RLG00000022851 RLG00000030563 RLG00000033869 RLG00000034176
rosa_multiflora Rmu_co8013424.1_g000001 Rmu_co8016716.1_g000001 Rmu_co8183472.1_g000001 Rmu_co8254047.1_g000001 Rmu_co8354891.1_g000001 Rmu_sc0000124.1_g000003 Rmu_sc0002132.1_g000027 Rmu_sc0003007.1_g000011 Rmu_sc0003221.1_g000096 Rmu_sc0003221.1_g000097 Rmu_sc0005119.1_g000004 Rmu_sc0008057.1_g000005 Rmu_sc0034532.1_g000001 Rmu_sc0036406.1_g000001 Rmu_ssc0000008.1_g000009
rosa_roxburghii Rroxscaffold_1G00030520 Rroxscaffold_2G00107360 Rroxscaffold_2G00153420 Rroxscaffold_5G00335750 Rroxscaffold_5G00351760 Rroxscaffold_5G00352080 Rroxscaffold_6G00419090
rosa_rugosa Rorug01G0341800 Rorug01G0341900 Rorug02G0180200 Rorug02G0180300 Rorug03G0186100 Rorug03G0186200 Rorug03G0284800 Rorug04G0104500 Rorug05G0246300 Rorug06G0108400 Rorug06G0471500 Rorug06G0510400
rosa_samantha Rh1AG159000 Rh1CG148200 Rh1CG189900 Rh2AG552800 Rh2BG473900 Rh2BG612100 Rh2BG612300 Rh2DG094500 Rh2DG482600 Rh3BG234000 Rh3CG320000 Rh4AG144200 Rh4BG127900 Rh4DG097300 Rh5AG128900 Rh5AG381200 Rh5BG363000 Rh5DG491900 Rh6AG048400 Rh6BG168100 Rh6CG005800 Rh6DG006000 Rh7AG255100 Rh7BG360600 Rh7CG271700 Rh7CG482300 Rh7DG451200
rosa_wichuraiana Rw4G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 32
AciI CCGC 4 cut(s) 5, 32, 140, 200
AcuI CTGAAG 2 cut(s) 39, 59
AluBI AGCT 2 cut(s) 218, 261
AluI AGCT 2 cut(s) 218, 261
AoxI GGCC 1 cut(s) 243
ApeKI GCWGC 3 cut(s) 209, 212, 215
AxyI CCTNAGG 1 cut(s) 240
BbvI GCAGC 3 cut(s) 196, 224, 227
BccI CCATC 1 cut(s) 358
BfaI CTAG 1 cut(s) 368
BfmI CTRYAG 1 cut(s) 210
BisI GCNGC 3 cut(s) 210, 213, 216
BlsI GCNGC 3 cut(s) 211, 214, 217
BmsI GCATC 2 cut(s) 69, 299
BpuEI CTTGAG 1 cut(s) 104
BsaJI CCNNGG 1 cut(s) 246
Bse1I ACTGG 1 cut(s) 131
Bse21I CCTNAGG 1 cut(s) 240
BseDI CCNNGG 1 cut(s) 246
BseNI ACTGG 1 cut(s) 131
BseRI GAGGAG 1 cut(s) 89
BseXI GCAGC 3 cut(s) 196, 224, 227
BseYI CCCAGC 1 cut(s) 265
Bsh1236I CGCG 1 cut(s) 32
BshFI GGCC 1 cut(s) 245
BsnI GGCC 1 cut(s) 245
BspACI CCGC 4 cut(s) 5, 32, 140, 200
BspANI GGCC 1 cut(s) 245
BspFNI CGCG 1 cut(s) 32
BspMAI CTGCAG 1 cut(s) 214
BsrI ACTGG 1 cut(s) 131
BssECI CCNNGG 1 cut(s) 246
BssT1I CCWWGG 1 cut(s) 246
Bst4CI ACNGT 1 cut(s) 49
BstC8I GCNNGC 2 cut(s) 263, 318
BstDEI CTNAG 1 cut(s) 240
BstFNI CGCG 1 cut(s) 32
BstMWI GCNNNNNNNGC 7 cut(s) 22, 206, 215, 224, 233, 242, 326
BstNSI RCATGY 1 cut(s) 320
BstSFI CTRYAG 1 cut(s) 210
BstUI CGCG 1 cut(s) 32
BstV1I GCAGC 3 cut(s) 196, 224, 227
Bsu36I CCTNAGG 1 cut(s) 240
BsuRI GGCC 1 cut(s) 245
Cac8I GCNNGC 2 cut(s) 263, 318
CseI GACGC 1 cut(s) 38
CspCI CAANNNNNGTGG 2 cut(s) 91, 126
CviAII CATG 2 cut(s) 223, 317
CviJI RGCY 6 cut(s) 16, 118, 218, 227, 245, 261
CviKI_1 RGCY 6 cut(s) 16, 118, 218, 227, 245, 261
DdeI CTNAG 1 cut(s) 240
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 246
Eco57I CTGAAG 2 cut(s) 39, 59
Eco81I CCTNAGG 1 cut(s) 240
EcoT14I CCWWGG 1 cut(s) 246
ErhI CCWWGG 1 cut(s) 246
FaeI CATG 2 cut(s) 226, 320
FaiI YATR 6 cut(s) 65, 92, 224, 311, 318, 323
FatI CATG 2 cut(s) 222, 316
FauI CCCGC 1 cut(s) 193
Fnu4HI GCNGC 3 cut(s) 210, 213, 216
Fsp4HI GCNGC 3 cut(s) 210, 213, 216
FspBI CTAG 1 cut(s) 368
GluI GCNGC 3 cut(s) 210, 213, 216
GsaI CCCAGC 1 cut(s) 269
HaeIII GGCC 1 cut(s) 245
HgaI GACGC 1 cut(s) 38
Hin1II CATG 2 cut(s) 226, 320
HindIII AAGCTT 1 cut(s) 259
Hpy188III TCNNGA 1 cut(s) 122
HpyAV CCTTC 1 cut(s) 34
HpyCH4III ACNGT 1 cut(s) 49
HpyCH4V TGCA 3 cut(s) 212, 290, 309
HpyF10VI GCNNNNNNNGC 7 cut(s) 22, 206, 215, 224, 233, 242, 326
HpyF3I CTNAG 1 cut(s) 240
Hsp92II CATG 2 cut(s) 226, 320
LmnI GCTCC 1 cut(s) 241
LpnPI CCDG 6 cut(s) 30, 112, 135, 143, 251, 279
Lsp1109I GCAGC 3 cut(s) 196, 224, 227
LweI GCATC 2 cut(s) 69, 299
MaeI CTAG 1 cut(s) 368
MnlI CCTC 3 cut(s) 67, 100, 129
MvnI CGCG 1 cut(s) 32
MwoI GCNNNNNNNGC 7 cut(s) 22, 206, 215, 224, 233, 242, 326
NlaIII CATG 2 cut(s) 226, 320
NspI RCATGY 1 cut(s) 320
PaeI GCATGC 1 cut(s) 320
PkrI GCNGC 3 cut(s) 211, 214, 217
PspFI CCCAGC 1 cut(s) 265
PstI CTGCAG 1 cut(s) 214
SatI GCNGC 3 cut(s) 210, 213, 216
SetI ASST 2 cut(s) 220, 263
SfaNI GCATC 2 cut(s) 69, 299
SfcI CTRYAG 1 cut(s) 210
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
SphI GCATGC 1 cut(s) 320
SsiI CCGC 4 cut(s) 5, 32, 140, 200
SspMI CTAG 1 cut(s) 368
StyI CCWWGG 1 cut(s) 246
TaaI ACNGT 1 cut(s) 49
TseI GCWGC 3 cut(s) 209, 212, 215
TspDTI ATGAA 1 cut(s) 172
XceI RCATGY 1 cut(s) 320
XspI CTAG 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.