Rh7AG255100

Plasma membrane ATPase 1

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Reverse (-)
25804142 .. 25805126
985 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG255100.1

Sequence Viewer

Length: 303 bp
ATGCAGGGGAAGCCTCCTGACTGGCAAGATTTTACGGTTATTATTACTCTGCTGGTCATCAACTCCACCATTAGTTTCATCAAGGAAAATAATGCGGGTAATGCTGCAGCAGCTCTCATGGCTCGTCTTGCTCCTAAAGCCAAGAAATGGTCCGAGATCATTGGGCAAGCACGCCAAAGTGTCGAAGTTCTTAAAGATCAGGAAGTGATTCGAACCGTTCTTAATATATTACAGACAAACTGCCAGTTCTCTTGGAACATTTCTCTTAACCCAGATTTCATTGATCTTTTTCGACATGCTTAA

Protein Analysis

100

Amino Acids

11.27

Weight (kDa)

7.91

Isoelectric Point (pI)

34.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000545)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36571
pyrus_communis pycom02g01560 pycom08g10820 pycom09g05820 pycom13g21850 pycom14g16010
rosa_chinensis RchiOBHm_Chr2g0094861 RchiOBHm_Chr2g0124911 RchiOBHm_Chr2g0138581 RchiOBHm_Chr2g0160851 RchiOBHm_Chr4g0407411
rosa_laevigata RLG00000001652 RLG00000001872 RLG00000002037 RLG00000003076 RLG00000006419 RLG00000016771 RLG00000017383 RLG00000022851 RLG00000030563 RLG00000033869 RLG00000034176
rosa_multiflora Rmu_co8013424.1_g000001 Rmu_co8016716.1_g000001 Rmu_co8183472.1_g000001 Rmu_co8254047.1_g000001 Rmu_co8354891.1_g000001 Rmu_sc0000124.1_g000003 Rmu_sc0002132.1_g000027 Rmu_sc0003007.1_g000011 Rmu_sc0003221.1_g000096 Rmu_sc0003221.1_g000097 Rmu_sc0005119.1_g000004 Rmu_sc0008057.1_g000005 Rmu_sc0034532.1_g000001 Rmu_sc0036406.1_g000001 Rmu_ssc0000008.1_g000009
rosa_roxburghii Rroxscaffold_1G00030520 Rroxscaffold_2G00107360 Rroxscaffold_2G00153420 Rroxscaffold_5G00335750 Rroxscaffold_5G00351760 Rroxscaffold_5G00352080 Rroxscaffold_6G00419090
rosa_rugosa Rorug01G0341800 Rorug01G0341900 Rorug02G0180200 Rorug02G0180300 Rorug03G0186100 Rorug03G0186200 Rorug03G0284800 Rorug04G0104500 Rorug05G0246300 Rorug06G0108400 Rorug06G0471500 Rorug06G0510400
rosa_samantha Rh1AG159000 Rh1CG148200 Rh1CG189900 Rh2AG552800 Rh2BG473900 Rh2BG612100 Rh2BG612300 Rh2DG094500 Rh2DG482600 Rh3BG234000 Rh3CG320000 Rh4AG144200 Rh4BG127900 Rh4DG097300 Rh5AG128900 Rh5AG381200 Rh5BG363000 Rh5DG491900 Rh6AG048400 Rh6BG168100 Rh6CG005800 Rh6DG006000 Rh7AG255100 Rh7BG360600 Rh7CG271700 Rh7CG482300 Rh7DG451200
rosa_wichuraiana Rw4G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 147
AciI CCGC 1 cut(s) 95
AfiI CCNNNNNNNGG 1 cut(s) 147
AluBI AGCT 1 cut(s) 113
AluI AGCT 1 cut(s) 113
ApeKI GCWGC 3 cut(s) 104, 107, 110
Asp700I GAANNNNTTC 1 cut(s) 207
AspS9I GGNCC 1 cut(s) 150
AsuII TTCGAA 1 cut(s) 211
AvaII GGWCC 1 cut(s) 150
BbvI GCAGC 3 cut(s) 91, 119, 122
BfmI CTRYAG 1 cut(s) 105
BisI GCNGC 3 cut(s) 105, 108, 111
BlsI GCNGC 3 cut(s) 106, 109, 112
Bme18I GGWCC 1 cut(s) 150
BmgT120I GGNCC 1 cut(s) 150
Bpu14I TTCGAA 1 cut(s) 211
Bsc4I CCNNNNNNNGG 1 cut(s) 147
Bse1I ACTGG 2 cut(s) 26, 244
BseLI CCNNNNNNNGG 1 cut(s) 147
BseNI ACTGG 2 cut(s) 26, 244
BseXI GCAGC 3 cut(s) 91, 119, 122
BslI CCNNNNNNNGG 1 cut(s) 147
Bsp119I TTCGAA 1 cut(s) 211
Bsp143I GATC 3 cut(s) 156, 196, 283
BspACI CCGC 1 cut(s) 95
BspMAI CTGCAG 1 cut(s) 109
BspT104I TTCGAA 1 cut(s) 211
BsrI ACTGG 2 cut(s) 26, 244
BssMI GATC 3 cut(s) 156, 196, 283
Bst4CI ACNGT 2 cut(s) 37, 217
BstBI TTCGAA 1 cut(s) 211
BstC8I GCNNGC 2 cut(s) 168, 172
BstKTI GATC 3 cut(s) 159, 199, 286
BstMBI GATC 3 cut(s) 156, 196, 283
BstMWI GCNNNNNNNGC 6 cut(s) 10, 101, 110, 119, 128, 137
BstNSI RCATGY 1 cut(s) 299
BstSFI CTRYAG 1 cut(s) 105
BstV1I GCAGC 3 cut(s) 91, 119, 122
Cac8I GCNNGC 2 cut(s) 168, 172
Cfr13I GGNCC 1 cut(s) 150
CviAII CATG 2 cut(s) 118, 296
CviJI RGCY 4 cut(s) 13, 113, 122, 140
CviKI_1 RGCY 4 cut(s) 13, 113, 122, 140
DpnI GATC 3 cut(s) 158, 198, 285
DpnII GATC 3 cut(s) 156, 196, 283
Eco47I GGWCC 1 cut(s) 150
FaeI CATG 2 cut(s) 121, 299
FaiI YATR 3 cut(s) 119, 227, 297
FatI CATG 2 cut(s) 117, 295
FauI CCCGC 1 cut(s) 88
Fnu4HI GCNGC 3 cut(s) 105, 108, 111
Fsp4HI GCNGC 3 cut(s) 105, 108, 111
GluI GCNGC 3 cut(s) 105, 108, 111
Hin1II CATG 2 cut(s) 121, 299
HinfI GANTC 1 cut(s) 208
Hpy188I TCNGA 1 cut(s) 154
Hpy188III TCNNGA 2 cut(s) 17, 200
HpyCH4III ACNGT 2 cut(s) 37, 217
HpyCH4V TGCA 2 cut(s) 4, 107
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 101, 110, 119, 128, 137
Hsp92II CATG 2 cut(s) 121, 299
Kzo9I GATC 3 cut(s) 156, 196, 283
LmnI GCTCC 1 cut(s) 136
LpnPI CCDG 6 cut(s) 7, 30, 38, 185, 257, 285
Lsp1109I GCAGC 3 cut(s) 91, 119, 122
MalI GATC 3 cut(s) 158, 198, 285
MboI GATC 3 cut(s) 156, 196, 283
MnlI CCTC 1 cut(s) 24
MroXI GAANNNNTTC 1 cut(s) 207
MseI TTAA 4 cut(s) 192, 222, 267, 301
MwoI GCNNNNNNNGC 6 cut(s) 10, 101, 110, 119, 128, 137
NdeII GATC 3 cut(s) 156, 196, 283
NlaIII CATG 2 cut(s) 121, 299
NspI RCATGY 1 cut(s) 299
NspV TTCGAA 1 cut(s) 211
PdmI GAANNNNTTC 1 cut(s) 207
PfeI GAWTC 1 cut(s) 208
PflMI CCANNNNNTGG 1 cut(s) 147
PkrI GCNGC 3 cut(s) 106, 109, 112
PspPI GGNCC 1 cut(s) 150
PstI CTGCAG 1 cut(s) 109
SaqAI TTAA 4 cut(s) 192, 222, 267, 301
SatI GCNGC 3 cut(s) 105, 108, 111
Sau3AI GATC 3 cut(s) 156, 196, 283
Sau96I GGNCC 1 cut(s) 150
SetI ASST 1 cut(s) 115
SfcI CTRYAG 1 cut(s) 105
SfuI TTCGAA 1 cut(s) 211
SinI GGWCC 1 cut(s) 150
SsiI CCGC 1 cut(s) 95
TaaI ACNGT 2 cut(s) 37, 217
TaqI TCGA 3 cut(s) 183, 211, 292
TfiI GAWTC 1 cut(s) 208
Tru1I TTAA 4 cut(s) 192, 222, 267, 301
Tru9I TTAA 4 cut(s) 192, 222, 267, 301
TseI GCWGC 3 cut(s) 104, 107, 110
TspDTI ATGAA 2 cut(s) 67, 268
Van91I CCANNNNNTGG 1 cut(s) 147
VpaK11BI GGWCC 1 cut(s) 150
XceI RCATGY 1 cut(s) 299
XmnI GAANNNNTTC 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.