Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0000545

Physical Location & Seq

Genomic Coordinates Reverse (-)

34269067 .. 34272816

Gene Structure 3750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG320000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGTTGCCACAAGCTCAAGCAAATTTAAGTCAAGCATAAAACAAACTCTCATTCTACACATAATCAAGCATGAAAACATATCCATTGAGGAGGTGCTTGAGAATATGAGATGTAGCAAAGAGGATCTCAGCAGTGAGGCTGCTGAGGAAAGATTAGCCATTTTTGGGCATAACAAGCTTGAGGAAAAGCAGGGGAAGCCTCCTGACTGGCAAGATTTTGCGGTTATTATTACTCTGCTGGTCATCAACTCCACCATTAGTTTCATCAAGGAAAATAATGCGGGTAATGTTGCAGCAGCTCTCATGGCCTGTCTTGCTCCTAAAGCCAAGGTATCAGATATACCAATATGTTGTCGTTTTGTTTTTAGGGTGGTAGTTACTGCTTCTGTTATGGTGATACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006970 GO:0008150 GO:0008324 GO:0008553 GO:0009628 GO:0009651 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0015672 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0034220 GO:0036442 GO:0042623 GO:0042625 GO:0042626 GO:0043492 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

134

Amino Acids

14.8

Weight (kDa)

6.82

Isoelectric Point (pI)

45.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_N	PF00690	26 - 67	2e-06	Cation transporter/ATPase, N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000545)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g36571
pyrus_communis	pycom02g01560 pycom08g10820 pycom09g05820 pycom13g21850 pycom14g16010
rosa_chinensis	RchiOBHm_Chr2g0094861 RchiOBHm_Chr2g0124911 RchiOBHm_Chr2g0138581 RchiOBHm_Chr2g0160851 RchiOBHm_Chr4g0407411
rosa_laevigata	RLG00000001652 RLG00000001872 RLG00000002037 RLG00000003076 RLG00000006419 RLG00000016771 RLG00000017383 RLG00000022851 RLG00000030563 RLG00000033869 RLG00000034176
rosa_multiflora	Rmu_co8013424.1_g000001 Rmu_co8016716.1_g000001 Rmu_co8183472.1_g000001 Rmu_co8254047.1_g000001 Rmu_co8354891.1_g000001 Rmu_sc0000124.1_g000003 Rmu_sc0002132.1_g000027 Rmu_sc0003007.1_g000011 Rmu_sc0003221.1_g000096 Rmu_sc0003221.1_g000097 Rmu_sc0005119.1_g000004 Rmu_sc0008057.1_g000005 Rmu_sc0034532.1_g000001 Rmu_sc0036406.1_g000001 Rmu_ssc0000008.1_g000009
rosa_roxburghii	Rroxscaffold_1G00030520 Rroxscaffold_2G00107360 Rroxscaffold_2G00153420 Rroxscaffold_5G00335750 Rroxscaffold_5G00351760 Rroxscaffold_5G00352080 Rroxscaffold_6G00419090
rosa_rugosa	Rorug01G0341800 Rorug01G0341900 Rorug02G0180200 Rorug02G0180300 Rorug03G0186100 Rorug03G0186200 Rorug03G0284800 Rorug04G0104500 Rorug05G0246300 Rorug06G0108400 Rorug06G0471500 Rorug06G0510400
rosa_samantha	Rh1AG159000 Rh1CG148200 Rh1CG189900 Rh2AG552800 Rh2BG473900 Rh2BG612100 Rh2BG612300 Rh2DG094500 Rh2DG482600 Rh3BG234000 Rh3CG320000 Rh4AG144200 Rh4BG127900 Rh4DG097300 Rh5AG128900 Rh5AG381200 Rh5BG363000 Rh5DG491900 Rh6AG048400 Rh6BG168100 Rh6CG005800 Rh6DG006000 Rh7AG255100 Rh7BG360600 Rh7CG271700 Rh7CG482300 Rh7DG451200
rosa_wichuraiana	Rw4G004970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	221, 281
AclWI	GGATC	1 cut(s)	132
AcsI	RAATTY	1 cut(s)	23
AfiI	CCNNNNNNNGG	1 cut(s)	165
AluBI	AGCT	3 cut(s)	15, 178, 299
AluI	AGCT	3 cut(s)	15, 178, 299
AlwI	GGATC	1 cut(s)	132
AoxI	GGCC	1 cut(s)	306
ApeKI	GCWGC	3 cut(s)	140, 293, 296
ApoI	RAATTY	1 cut(s)	23
BbvCI	CCTCAGC	1 cut(s)	144
BbvI	GCAGC	3 cut(s)	127, 305, 308
BisI	GCNGC	3 cut(s)	141, 294, 297
BlsI	GCNGC	3 cut(s)	142, 295, 298
Bpu10I	CCTNAGC	1 cut(s)	144
BpuEI	CTTGAG	2 cut(s)	119, 200
BsaJI	CCNNGG	1 cut(s)	327
Bsc4I	CCNNNNNNNGG	1 cut(s)	165
Bse1I	ACTGG	1 cut(s)	212
BseDI	CCNNGG	1 cut(s)	327
BseLI	CCNNNNNNNGG	1 cut(s)	165
BseMII	CTCAG	2 cut(s)	135, 142
BseNI	ACTGG	1 cut(s)	212
BseRI	GAGGAG	1 cut(s)	104
BseXI	GCAGC	3 cut(s)	127, 305, 308
BshFI	GGCC	1 cut(s)	308
BslI	CCNNNNNNNGG	1 cut(s)	165
BsnI	GGCC	1 cut(s)	308
Bsp143I	GATC	1 cut(s)	124
BspACI	CCGC	2 cut(s)	221, 281
BspANI	GGCC	1 cut(s)	308
BspCNI	CTCAG	2 cut(s)	136, 141
BspPI	GGATC	1 cut(s)	132
BsrI	ACTGG	1 cut(s)	212
BssECI	CCNNGG	1 cut(s)	327
BssMI	GATC	1 cut(s)	124
BssT1I	CCWWGG	1 cut(s)	327
BstDEI	CTNAG	2 cut(s)	128, 144
BstKTI	GATC	1 cut(s)	127
BstMBI	GATC	1 cut(s)	124
BstMWI	GCNNNNNNNGC	5 cut(s)	175, 196, 305, 314, 323
BstV1I	GCAGC	3 cut(s)	127, 305, 308
BstX2I	RGATCY	1 cut(s)	124
BstYI	RGATCY	1 cut(s)	124
BsuRI	GGCC	1 cut(s)	308
BtsI	GCAGTG	1 cut(s)	139
BtsIMutI	CAGTG	1 cut(s)	139
CviAII	CATG	2 cut(s)	71, 304
CviJI	RGCY	8 cut(s)	15, 140, 158, 178, 199, 299, 308, 326
CviKI_1	RGCY	8 cut(s)	15, 140, 158, 178, 199, 299, 308, 326
DdeI	CTNAG	2 cut(s)	128, 144
DpnI	GATC	1 cut(s)	126
DpnII	GATC	1 cut(s)	124
Eco130I	CCWWGG	1 cut(s)	327
EcoT14I	CCWWGG	1 cut(s)	327
ErhI	CCWWGG	1 cut(s)	327
FaeI	CATG	2 cut(s)	74, 307
FatI	CATG	2 cut(s)	70, 303
FauI	CCCGC	1 cut(s)	274
Fnu4HI	GCNGC	3 cut(s)	141, 294, 297
Fsp4HI	GCNGC	3 cut(s)	141, 294, 297
GluI	GCNGC	3 cut(s)	141, 294, 297
HaeIII	GGCC	1 cut(s)	308
Hin1II	CATG	2 cut(s)	74, 307
HindIII	AAGCTT	1 cut(s)	176
Hpy188I	TCNGA	1 cut(s)	337
Hpy188III	TCNNGA	1 cut(s)	203
HpyCH4V	TGCA	1 cut(s)	293
HpyF10VI	GCNNNNNNNGC	5 cut(s)	175, 196, 305, 314, 323
HpyF3I	CTNAG	2 cut(s)	128, 144
Hsp92II	CATG	2 cut(s)	74, 307
Kzo9I	GATC	1 cut(s)	124
LmnI	GCTCC	1 cut(s)	322
LpnPI	CCDG	5 cut(s)	176, 193, 216, 224, 322
Lsp1109I	GCAGC	3 cut(s)	127, 305, 308
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	1 cut(s)	126
MboI	GATC	1 cut(s)	124
MflI	RGATCY	1 cut(s)	124
MluCI	AATT	1 cut(s)	23
MnlI	CCTC	7 cut(s)	82, 85, 115, 130, 139, 175, 210
MseI	TTAA	1 cut(s)	27
MwoI	GCNNNNNNNGC	5 cut(s)	175, 196, 305, 314, 323
NdeII	GATC	1 cut(s)	124
NlaIII	CATG	2 cut(s)	74, 307
PkrI	GCNGC	3 cut(s)	142, 295, 298
PsuI	RGATCY	1 cut(s)	124
SaqAI	TTAA	1 cut(s)	27
SatI	GCNGC	3 cut(s)	141, 294, 297
Sau3AI	GATC	1 cut(s)	124
SetI	ASST	5 cut(s)	17, 96, 180, 301, 333
SmlI	CTYRAG	3 cut(s)	16, 98, 179
SmoI	CTYRAG	3 cut(s)	16, 98, 179
Sse9I	AATT	1 cut(s)	23
SsiI	CCGC	2 cut(s)	221, 281
StyI	CCWWGG	1 cut(s)	327
TasI	AATT	1 cut(s)	23
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TscAI	CASTG	1 cut(s)	139
TseI	GCWGC	3 cut(s)	140, 293, 296
TspDTI	ATGAA	2 cut(s)	87, 253
TspRI	CASTG	1 cut(s)	139
XapI	RAATTY	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.