Rmu_ssc0000008.1_g000009

ATPase 11, plasma

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000008.1
OG0000545
Physical Location & Seq
Reverse (-)
35692 .. 36874
1183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000008.1_g000009.1.cds

Sequence Viewer

Length: 510 bp
atgggggatttgggttctgaccaatcgagttgggttctcccccgaaacctatccctctactccctcccttcccgctcgcgcgggctctctctaggaggtgcagagatttctttgtggctcatctcggaggtgcatcctggcgctgactggtcggaggaaggcgaagaagatggtggctacggtgagtccaccccggtggtcagagatcgagctgtgacgagagaggaagaggagagagagatggcggacgagaagcctgaagtgcttgacgcggtgctgaaggaaacagttgatttggggaagcctcctgactggcaagattttgtggttattattactctgctggtcatcaactccaccattagtttcatcaaggaaaataatgcaggtaatgctgcagcagctctcatggctcgtcttgctcctaaagccaaggtatcagatataccaatatgttgtcgttttgtttttagggtggtagttactgcttctgttatgggaatacaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

169

Amino Acids

18.4

Weight (kDa)

4.53

Isoelectric Point (pI)

35.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000545)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36571
pyrus_communis pycom02g01560 pycom08g10820 pycom09g05820 pycom13g21850 pycom14g16010
rosa_chinensis RchiOBHm_Chr2g0094861 RchiOBHm_Chr2g0124911 RchiOBHm_Chr2g0138581 RchiOBHm_Chr2g0160851 RchiOBHm_Chr4g0407411
rosa_laevigata RLG00000001652 RLG00000001872 RLG00000002037 RLG00000003076 RLG00000006419 RLG00000016771 RLG00000017383 RLG00000022851 RLG00000030563 RLG00000033869 RLG00000034176
rosa_multiflora Rmu_co8013424.1_g000001 Rmu_co8016716.1_g000001 Rmu_co8183472.1_g000001 Rmu_co8254047.1_g000001 Rmu_co8354891.1_g000001 Rmu_sc0000124.1_g000003 Rmu_sc0002132.1_g000027 Rmu_sc0003007.1_g000011 Rmu_sc0003221.1_g000096 Rmu_sc0003221.1_g000097 Rmu_sc0005119.1_g000004 Rmu_sc0008057.1_g000005 Rmu_sc0034532.1_g000001 Rmu_sc0036406.1_g000001 Rmu_ssc0000008.1_g000009
rosa_roxburghii Rroxscaffold_1G00030520 Rroxscaffold_2G00107360 Rroxscaffold_2G00153420 Rroxscaffold_5G00335750 Rroxscaffold_5G00351760 Rroxscaffold_5G00352080 Rroxscaffold_6G00419090
rosa_rugosa Rorug01G0341800 Rorug01G0341900 Rorug02G0180200 Rorug02G0180300 Rorug03G0186100 Rorug03G0186200 Rorug03G0284800 Rorug04G0104500 Rorug05G0246300 Rorug06G0108400 Rorug06G0471500 Rorug06G0510400
rosa_samantha Rh1AG159000 Rh1CG148200 Rh1CG189900 Rh2AG552800 Rh2BG473900 Rh2BG612100 Rh2BG612300 Rh2DG094500 Rh2DG482600 Rh3BG234000 Rh3CG320000 Rh4AG144200 Rh4BG127900 Rh4DG097300 Rh5AG128900 Rh5AG381200 Rh5BG363000 Rh5DG491900 Rh6AG048400 Rh6BG168100 Rh6CG005800 Rh6DG006000 Rh7AG255100 Rh7BG360600 Rh7CG271700 Rh7CG482300 Rh7DG451200
rosa_wichuraiana Rw4G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 377
AccBSI CCGCTC 1 cut(s) 75
AccII CGCG 3 cut(s) 79, 81, 272
AciI CCGC 4 cut(s) 73, 81, 245, 272
AcuI CTGAAG 2 cut(s) 279, 299
AjnI CCWGG 1 cut(s) 136
AleI CACNNNNGTG 1 cut(s) 194
AluBI AGCT 2 cut(s) 212, 404
AluI AGCT 2 cut(s) 212, 404
ApeKI GCWGC 3 cut(s) 395, 398, 401
AspLEI GCGC 2 cut(s) 81, 143
AsuC2I CCSGG 1 cut(s) 194
AsuHPI GGTGA 1 cut(s) 194
BanII GRGCYC 1 cut(s) 87
BbvI GCAGC 3 cut(s) 382, 410, 413
BccI CCATC 2 cut(s) 164, 235
BciT130I CCWGG 1 cut(s) 138
BcnI CCSGG 1 cut(s) 194
BfaI CTAG 1 cut(s) 92
BfmI CTRYAG 1 cut(s) 396
BfoI RGCGCY 1 cut(s) 144
BfuAI ACCTGC 1 cut(s) 377
BisI GCNGC 3 cut(s) 396, 399, 402
BlsI GCNGC 3 cut(s) 397, 400, 403
Bme1390I CCNGG 2 cut(s) 138, 194
BmrFI CCNGG 2 cut(s) 138, 194
BmsI GCATC 1 cut(s) 142
BpuMI CCSGG 1 cut(s) 194
BsaJI CCNNGG 2 cut(s) 192, 432
Bse1I ACTGG 2 cut(s) 152, 317
BseBI CCWGG 1 cut(s) 138
BseDI CCNNGG 2 cut(s) 192, 432
BseGI GGATG 1 cut(s) 133
BseNI ACTGG 2 cut(s) 152, 317
BseRI GAGGAG 1 cut(s) 245
BseXI GCAGC 3 cut(s) 382, 410, 413
BsgI GTGCAG 1 cut(s) 120
Bsh1236I CGCG 3 cut(s) 79, 81, 272
BsiSI CCGG 1 cut(s) 194
Bsp1286I GDGCHC 1 cut(s) 87
Bsp143I GATC 1 cut(s) 205
BspACI CCGC 4 cut(s) 73, 81, 245, 272
BspFNI CGCG 3 cut(s) 79, 81, 272
BspMAI CTGCAG 1 cut(s) 400
BspMI ACCTGC 1 cut(s) 377
BsrBI CCGCTC 1 cut(s) 75
BsrI ACTGG 2 cut(s) 152, 317
BssECI CCNNGG 2 cut(s) 192, 432
BssMI GATC 1 cut(s) 205
BssT1I CCWWGG 1 cut(s) 432
Bst2UI CCWGG 1 cut(s) 138
Bst4CI ACNGT 2 cut(s) 182, 289
Bst6I CTCTTC 1 cut(s) 222
BstAPI GCANNNNNTGC 1 cut(s) 392
BstC8I GCNNGC 2 cut(s) 77, 83
BstF5I GGATG 1 cut(s) 133
BstFNI CGCG 3 cut(s) 79, 81, 272
BstH2I RGCGCY 1 cut(s) 144
BstHHI GCGC 2 cut(s) 81, 143
BstKTI GATC 1 cut(s) 208
BstMBI GATC 1 cut(s) 205
BstMWI GCNNNNNNNGC 6 cut(s) 262, 392, 401, 410, 419, 428
BstNI CCWGG 1 cut(s) 138
BstSCI CCNGG 2 cut(s) 136, 192
BstSFI CTRYAG 1 cut(s) 396
BstUI CGCG 3 cut(s) 79, 81, 272
BstV1I GCAGC 3 cut(s) 382, 410, 413
BstXI CCANNNNNNTGG 1 cut(s) 196
BtsCI GGATG 1 cut(s) 133
BveI ACCTGC 1 cut(s) 377
Cac8I GCNNGC 2 cut(s) 77, 83
CfoI GCGC 2 cut(s) 81, 143
CseI GACGC 1 cut(s) 278
CviAII CATG 1 cut(s) 409
CviJI RGCY 9 cut(s) 85, 118, 177, 212, 256, 304, 404, 413, 431
CviKI_1 RGCY 9 cut(s) 85, 118, 177, 212, 256, 304, 404, 413, 431
DpnI GATC 1 cut(s) 207
DpnII GATC 1 cut(s) 205
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
EciI GGCGGA 1 cut(s) 260
Eco130I CCWWGG 1 cut(s) 432
Eco24I GRGCYC 1 cut(s) 87
Eco57I CTGAAG 2 cut(s) 279, 299
EcoRII CCWGG 1 cut(s) 136
EcoT14I CCWWGG 1 cut(s) 432
EcoT38I GRGCYC 1 cut(s) 87
ErhI CCWWGG 1 cut(s) 432
FaeI CATG 1 cut(s) 412
FaiI YATR 4 cut(s) 410, 446, 454, 497
FatI CATG 1 cut(s) 408
FauI CCCGC 2 cut(s) 74, 80
Fnu4HI GCNGC 3 cut(s) 396, 399, 402
FokI GGATG 1 cut(s) 120
FriOI GRGCYC 1 cut(s) 87
Fsp4HI GCNGC 3 cut(s) 396, 399, 402
FspBI CTAG 1 cut(s) 92
GlaI GCGC 2 cut(s) 80, 142
GluI GCNGC 3 cut(s) 396, 399, 402
HaeII RGCGCY 1 cut(s) 144
HapII CCGG 1 cut(s) 194
HgaI GACGC 1 cut(s) 278
HhaI GCGC 2 cut(s) 81, 143
Hin1II CATG 1 cut(s) 412
Hin6I GCGC 2 cut(s) 79, 141
HinP1I GCGC 2 cut(s) 79, 141
HinfI GANTC 1 cut(s) 185
HpaII CCGG 1 cut(s) 194
HphI GGTGA 1 cut(s) 194
Hpy166II GTNNAC 1 cut(s) 189
Hpy188I TCNGA 5 cut(s) 19, 127, 154, 203, 442
Hpy188III TCNNGA 1 cut(s) 308
Hpy8I GTNNAC 1 cut(s) 189
HpyAV CCTTC 3 cut(s) 78, 152, 274
HpyCH4III ACNGT 2 cut(s) 182, 289
HpyCH4V TGCA 4 cut(s) 101, 133, 386, 398
HpyF10VI GCNNNNNNNGC 6 cut(s) 262, 392, 401, 410, 419, 428
Hsp92II CATG 1 cut(s) 412
HspAI GCGC 2 cut(s) 79, 141
Kzo9I GATC 1 cut(s) 205
LmnI GCTCC 1 cut(s) 427
LpnPI CCDG 9 cut(s) 123, 133, 150, 207, 270, 298, 321, 329, 372
Lsp1109I GCAGC 3 cut(s) 382, 410, 413
LweI GCATC 1 cut(s) 142
MaeI CTAG 1 cut(s) 92
MaeIII GTNAC 2 cut(s) 214, 481
MalI GATC 1 cut(s) 207
MbiI CCGCTC 1 cut(s) 75
MboI GATC 1 cut(s) 205
MboII GAAGA 3 cut(s) 176, 179, 239
MhlI GDGCHC 1 cut(s) 87
MlyI GAGTC 1 cut(s) 194
MmeI TCCRAC 1 cut(s) 132
MnlI CCTC 8 cut(s) 65, 74, 89, 121, 148, 217, 223, 315
MslI CAYNNNNRTG 1 cut(s) 194
MspI CCGG 1 cut(s) 194
MspR9I CCNGG 2 cut(s) 138, 194
MvaI CCWGG 1 cut(s) 138
MvnI CGCG 3 cut(s) 79, 81, 272
MwoI GCNNNNNNNGC 6 cut(s) 262, 392, 401, 410, 419, 428
NciI CCSGG 1 cut(s) 194
NdeII GATC 1 cut(s) 205
NlaIII CATG 1 cut(s) 412
NmuCI GTSAC 1 cut(s) 214
OliI CACNNNNGTG 1 cut(s) 194
PkrI GCNGC 3 cut(s) 397, 400, 403
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
Psp6I CCWGG 1 cut(s) 136
PspGI CCWGG 1 cut(s) 136
PstI CTGCAG 1 cut(s) 400
RseI CAYNNNNRTG 1 cut(s) 194
SatI GCNGC 3 cut(s) 396, 399, 402
Sau3AI GATC 1 cut(s) 205
SchI GAGTC 1 cut(s) 194
ScrFI CCNGG 2 cut(s) 138, 194
SduI GDGCHC 1 cut(s) 87
SetI ASST 7 cut(s) 51, 100, 132, 214, 391, 406, 438
SfaNI GCATC 1 cut(s) 142
SfcI CTRYAG 1 cut(s) 396
SmiMI CAYNNNNRTG 1 cut(s) 194
SsiI CCGC 4 cut(s) 73, 81, 245, 272
SspMI CTAG 1 cut(s) 92
StyD4I CCNGG 2 cut(s) 136, 192
StyI CCWWGG 1 cut(s) 432
TaaI ACNGT 2 cut(s) 182, 289
TaqI TCGA 2 cut(s) 26, 208
TseFI GTSAC 1 cut(s) 214
TseI GCWGC 3 cut(s) 395, 398, 401
Tsp45I GTSAC 1 cut(s) 214
TspDTI ATGAA 1 cut(s) 358
XspI CTAG 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.