Rh2AG552800

Mitochondrial biogenesis AIM24

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000545
Physical Location & Seq
Reverse (-)
78358522 .. 78365739
7218 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG552800.1

Sequence Viewer

Length: 270 bp
ATGGCTTCCGATGGGGACCAAAACCAAGTTTGTCTTTGCAAGGCCAGCCAAATCTATAGAGACCCTTTTCAAGGTTTTCTAAGACAGAAGCTATCTGGCCAAGGGCTTGCATTTATAATTGCAGGTGGATCTGTTGTACAGAAAAATCTTGAGGTGGGCAAGGTACTATCTGTTGATGTTTCTTGTATAGCAGTTGTGACTAGCTACAACAGTCAACGTCCAAATCAAATACAATGGGCCCATGAGAAGAGCAGTGTTTGGTATAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIM24

Protein Analysis

89

Amino Acids

9.81

Weight (kDa)

8.53

Isoelectric Point (pI)

20.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AIM24 PF01987 24 - 69 3e-08 Mitochondrial biogenesis AIM24
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000545)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36571
pyrus_communis pycom02g01560 pycom08g10820 pycom09g05820 pycom13g21850 pycom14g16010
rosa_chinensis RchiOBHm_Chr2g0094861 RchiOBHm_Chr2g0124911 RchiOBHm_Chr2g0138581 RchiOBHm_Chr2g0160851 RchiOBHm_Chr4g0407411
rosa_laevigata RLG00000001652 RLG00000001872 RLG00000002037 RLG00000003076 RLG00000006419 RLG00000016771 RLG00000017383 RLG00000022851 RLG00000030563 RLG00000033869 RLG00000034176
rosa_multiflora Rmu_co8013424.1_g000001 Rmu_co8016716.1_g000001 Rmu_co8183472.1_g000001 Rmu_co8254047.1_g000001 Rmu_co8354891.1_g000001 Rmu_sc0000124.1_g000003 Rmu_sc0002132.1_g000027 Rmu_sc0003007.1_g000011 Rmu_sc0003221.1_g000096 Rmu_sc0003221.1_g000097 Rmu_sc0005119.1_g000004 Rmu_sc0008057.1_g000005 Rmu_sc0034532.1_g000001 Rmu_sc0036406.1_g000001 Rmu_ssc0000008.1_g000009
rosa_roxburghii Rroxscaffold_1G00030520 Rroxscaffold_2G00107360 Rroxscaffold_2G00153420 Rroxscaffold_5G00335750 Rroxscaffold_5G00351760 Rroxscaffold_5G00352080 Rroxscaffold_6G00419090
rosa_rugosa Rorug01G0341800 Rorug01G0341900 Rorug02G0180200 Rorug02G0180300 Rorug03G0186100 Rorug03G0186200 Rorug03G0284800 Rorug04G0104500 Rorug05G0246300 Rorug06G0108400 Rorug06G0471500 Rorug06G0510400
rosa_samantha Rh1AG159000 Rh1CG148200 Rh1CG189900 Rh2AG552800 Rh2BG473900 Rh2BG612100 Rh2BG612300 Rh2DG094500 Rh2DG482600 Rh3BG234000 Rh3CG320000 Rh4AG144200 Rh4BG127900 Rh4DG097300 Rh5AG128900 Rh5AG381200 Rh5BG363000 Rh5DG491900 Rh6AG048400 Rh6BG168100 Rh6CG005800 Rh6DG006000 Rh7AG255100 Rh7BG360600 Rh7CG271700 Rh7CG482300 Rh7DG451200
rosa_wichuraiana Rw4G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 116
AarI CACCTGC 1 cut(s) 113
Acc36I ACCTGC 1 cut(s) 113
AclWI GGATC 1 cut(s) 136
AcoI YGGCCR 1 cut(s) 97
AfaI GTAC 2 cut(s) 138, 165
AfiI CCNNNNNNNGG 1 cut(s) 71
AgsI TTSAA 1 cut(s) 71
AluBI AGCT 2 cut(s) 91, 204
AluI AGCT 2 cut(s) 91, 204
Alw26I GTCTC 1 cut(s) 54
AlwI GGATC 1 cut(s) 136
AoxI GGCC 3 cut(s) 42, 97, 237
ApaI GGGCCC 1 cut(s) 241
AspS9I GGNCC 3 cut(s) 16, 237, 238
AvaII GGWCC 1 cut(s) 16
BaeGI GKGCMC 1 cut(s) 241
BalI TGGCCA 1 cut(s) 99
BanII GRGCYC 1 cut(s) 241
BccI CCATC 1 cut(s) 5
BcoDI GTCTC 1 cut(s) 54
BfaI CTAG 1 cut(s) 201
BfmI CTRYAG 1 cut(s) 55
BfuAI ACCTGC 1 cut(s) 113
Bme18I GGWCC 1 cut(s) 16
BmgT120I GGNCC 3 cut(s) 16, 237, 238
BmiI GGNNCC 2 cut(s) 17, 239
BpuEI CTTGAG 1 cut(s) 170
BsaI GGTCTC 1 cut(s) 54
BsaJI CCNNGG 1 cut(s) 100
Bsc4I CCNNNNNNNGG 1 cut(s) 71
BseDI CCNNGG 1 cut(s) 100
BseLI CCNNNNNNNGG 1 cut(s) 71
BseSI GKGCMC 1 cut(s) 241
BshFI GGCC 3 cut(s) 44, 99, 239
BslFI GGGAC 1 cut(s) 29
BslI CCNNNNNNNGG 1 cut(s) 71
BsmAI GTCTC 1 cut(s) 54
BsmFI GGGAC 1 cut(s) 29
BsnI GGCC 3 cut(s) 44, 99, 239
Bso31I GGTCTC 1 cut(s) 54
Bsp120I GGGCCC 1 cut(s) 237
Bsp1286I GDGCHC 1 cut(s) 241
Bsp1407I TGTACA 1 cut(s) 136
Bsp143I GATC 1 cut(s) 128
BspANI GGCC 3 cut(s) 44, 99, 239
BspLI GGNNCC 2 cut(s) 17, 239
BspMI ACCTGC 1 cut(s) 113
BspPI GGATC 1 cut(s) 136
BspQI GCTCTTC 1 cut(s) 242
BspTNI GGTCTC 1 cut(s) 54
BsrGI TGTACA 1 cut(s) 136
BssECI CCNNGG 1 cut(s) 100
BssMI GATC 1 cut(s) 128
BssT1I CCWWGG 1 cut(s) 100
Bst4CI ACNGT 1 cut(s) 212
Bst6I CTCTTC 1 cut(s) 242
BstAUI TGTACA 1 cut(s) 136
BstC8I GCNNGC 2 cut(s) 46, 108
BstDEI CTNAG 1 cut(s) 80
BstENI CCTNNNNNAGG 1 cut(s) 69
BstKTI GATC 1 cut(s) 131
BstMAI GTCTC 1 cut(s) 54
BstMBI GATC 1 cut(s) 128
BstMWI GCNNNNNNNGC 1 cut(s) 45
BstSFI CTRYAG 1 cut(s) 55
BstSLI GKGCMC 1 cut(s) 241
BstX2I RGATCY 1 cut(s) 128
BstYI RGATCY 1 cut(s) 128
BsuRI GGCC 3 cut(s) 44, 99, 239
BtsI GCAGTG 1 cut(s) 259
BtsIMutI CAGTG 1 cut(s) 259
BveI ACCTGC 1 cut(s) 113
Cac8I GCNNGC 2 cut(s) 46, 108
Cfr13I GGNCC 3 cut(s) 16, 237, 238
Csp6I GTAC 2 cut(s) 137, 164
CviAII CATG 1 cut(s) 242
CviJI RGCY 8 cut(s) 5, 44, 48, 91, 99, 106, 204, 239
CviKI_1 RGCY 8 cut(s) 5, 44, 48, 91, 99, 106, 204, 239
CviQI GTAC 2 cut(s) 137, 164
DdeI CTNAG 1 cut(s) 80
DpnI GATC 1 cut(s) 130
DpnII GATC 1 cut(s) 128
EaeI YGGCCR 1 cut(s) 97
Eam1104I CTCTTC 1 cut(s) 242
EarI CTCTTC 1 cut(s) 242
Eco130I CCWWGG 1 cut(s) 100
Eco24I GRGCYC 1 cut(s) 241
Eco31I GGTCTC 1 cut(s) 54
Eco47I GGWCC 1 cut(s) 16
EcoNI CCTNNNNNAGG 1 cut(s) 69
EcoT14I CCWWGG 1 cut(s) 100
EcoT38I GRGCYC 1 cut(s) 241
ErhI CCWWGG 1 cut(s) 100
FaeI CATG 1 cut(s) 245
FaiI YATR 5 cut(s) 57, 116, 188, 243, 264
FalI AAGNNNNNCTT 2 cut(s) 18, 50
FaqI GGGAC 1 cut(s) 29
FatI CATG 1 cut(s) 241
FriOI GRGCYC 1 cut(s) 241
FspBI CTAG 1 cut(s) 201
HaeIII GGCC 3 cut(s) 44, 99, 239
Hin1II CATG 1 cut(s) 245
HincII GTYRAC 1 cut(s) 215
HindII GTYRAC 1 cut(s) 215
Hpy166II GTNNAC 1 cut(s) 215
Hpy188I TCNGA 1 cut(s) 10
Hpy188III TCNNGA 1 cut(s) 149
Hpy8I GTNNAC 1 cut(s) 215
HpyCH4III ACNGT 1 cut(s) 212
HpyCH4IV ACGT 1 cut(s) 217
HpyCH4V TGCA 3 cut(s) 39, 110, 122
HpyF10VI GCNNNNNNNGC 1 cut(s) 45
HpyF3I CTNAG 1 cut(s) 80
HpySE526I ACGT 1 cut(s) 217
Hsp92II CATG 1 cut(s) 245
Kzo9I GATC 1 cut(s) 128
LguI GCTCTTC 1 cut(s) 242
LpnPI CCDG 3 cut(s) 58, 81, 108
MaeI CTAG 1 cut(s) 201
MaeII ACGT 1 cut(s) 217
MaeIII GTNAC 1 cut(s) 196
MalI GATC 1 cut(s) 130
MboI GATC 1 cut(s) 128
MboII GAAGA 1 cut(s) 259
MflI RGATCY 1 cut(s) 128
MhlI GDGCHC 1 cut(s) 241
MlsI TGGCCA 1 cut(s) 99
MluCI AATT 1 cut(s) 117
MluNI TGGCCA 1 cut(s) 99
MnlI CCTC 1 cut(s) 145
Mox20I TGGCCA 1 cut(s) 99
MscI TGGCCA 1 cut(s) 99
Msp20I TGGCCA 1 cut(s) 99
MwoI GCNNNNNNNGC 1 cut(s) 45
NdeII GATC 1 cut(s) 128
NlaIII CATG 1 cut(s) 245
NlaIV GGNNCC 2 cut(s) 17, 239
NmuCI GTSAC 1 cut(s) 196
PaqCI CACCTGC 1 cut(s) 113
PciSI GCTCTTC 1 cut(s) 242
PsiI TTATAA 1 cut(s) 116
PspN4I GGNNCC 2 cut(s) 17, 239
PspOMI GGGCCC 1 cut(s) 237
PspPI GGNCC 3 cut(s) 16, 237, 238
PsuI RGATCY 1 cut(s) 128
RsaI GTAC 2 cut(s) 138, 165
RsaNI GTAC 2 cut(s) 137, 164
SapI GCTCTTC 1 cut(s) 242
Sau3AI GATC 1 cut(s) 128
Sau96I GGNCC 3 cut(s) 16, 237, 238
SduI GDGCHC 1 cut(s) 241
SetI ASST 7 cut(s) 76, 93, 127, 156, 165, 206, 220
SfcI CTRYAG 1 cut(s) 55
SinI GGWCC 1 cut(s) 16
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
Sse9I AATT 1 cut(s) 117
SspMI CTAG 1 cut(s) 201
StyI CCWWGG 1 cut(s) 100
TaaI ACNGT 1 cut(s) 212
TaiI ACGT 1 cut(s) 220
TasI AATT 1 cut(s) 117
TatI WGTACW 1 cut(s) 136
TscAI CASTG 1 cut(s) 259
TseFI GTSAC 1 cut(s) 196
Tsp45I GTSAC 1 cut(s) 196
TspRI CASTG 1 cut(s) 259
VpaK11BI GGWCC 1 cut(s) 16
XagI CCTNNNNNAGG 1 cut(s) 69
XspI CTAG 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.