RchiOBHm_Chr2g0094861

ATPase 10, plasma

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
7763749 .. 7766434
2686 bp
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UTR
Exon/CDS
Intron
PRQ46985

Sequence Viewer

Length: 216 bp
ATGTGGAACCCCTTGTCATGGGTTATGGAAGCTGCAGCAGTTATGGCACTTGTCCTTGCTAATGGGGGAGGTGAGGGTCCTGACTGGCAAGACTTTGTTGGGATTATTGTCCTATTAATAATCAATTCAACAATTAGTTTCATAGAGGAGAATAATGCGCGAAATGCTGCATCAGCTCTTATGGAACGTTTATCTCCAAAGACAAGGATGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

71

Amino Acids

7.72

Weight (kDa)

4.49

Isoelectric Point (pI)

33.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000545)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36571
pyrus_communis pycom02g01560 pycom08g10820 pycom09g05820 pycom13g21850 pycom14g16010
rosa_chinensis RchiOBHm_Chr2g0094861 RchiOBHm_Chr2g0124911 RchiOBHm_Chr2g0138581 RchiOBHm_Chr2g0160851 RchiOBHm_Chr4g0407411
rosa_laevigata RLG00000001652 RLG00000001872 RLG00000002037 RLG00000003076 RLG00000006419 RLG00000016771 RLG00000017383 RLG00000022851 RLG00000030563 RLG00000033869 RLG00000034176
rosa_multiflora Rmu_co8013424.1_g000001 Rmu_co8016716.1_g000001 Rmu_co8183472.1_g000001 Rmu_co8254047.1_g000001 Rmu_co8354891.1_g000001 Rmu_sc0000124.1_g000003 Rmu_sc0002132.1_g000027 Rmu_sc0003007.1_g000011 Rmu_sc0003221.1_g000096 Rmu_sc0003221.1_g000097 Rmu_sc0005119.1_g000004 Rmu_sc0008057.1_g000005 Rmu_sc0034532.1_g000001 Rmu_sc0036406.1_g000001 Rmu_ssc0000008.1_g000009
rosa_roxburghii Rroxscaffold_1G00030520 Rroxscaffold_2G00107360 Rroxscaffold_2G00153420 Rroxscaffold_5G00335750 Rroxscaffold_5G00351760 Rroxscaffold_5G00352080 Rroxscaffold_6G00419090
rosa_rugosa Rorug01G0341800 Rorug01G0341900 Rorug02G0180200 Rorug02G0180300 Rorug03G0186100 Rorug03G0186200 Rorug03G0284800 Rorug04G0104500 Rorug05G0246300 Rorug06G0108400 Rorug06G0471500 Rorug06G0510400
rosa_samantha Rh1AG159000 Rh1CG148200 Rh1CG189900 Rh2AG552800 Rh2BG473900 Rh2BG612100 Rh2BG612300 Rh2DG094500 Rh2DG482600 Rh3BG234000 Rh3CG320000 Rh4AG144200 Rh4BG127900 Rh4DG097300 Rh5AG128900 Rh5AG381200 Rh5BG363000 Rh5DG491900 Rh6AG048400 Rh6BG168100 Rh6CG005800 Rh6DG006000 Rh7AG255100 Rh7BG360600 Rh7CG271700 Rh7CG482300 Rh7DG451200
rosa_wichuraiana Rw4G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 160
AclI AACGTT 1 cut(s) 187
AfiI CCNNNNNNNGG 1 cut(s) 18
AgsI TTSAA 1 cut(s) 129
AluBI AGCT 2 cut(s) 32, 176
AluI AGCT 2 cut(s) 32, 176
ApeKI GCWGC 3 cut(s) 32, 35, 167
AseI ATTAAT 1 cut(s) 116
AspLEI GCGC 1 cut(s) 160
AspS9I GGNCC 1 cut(s) 77
AsuHPI GGTGA 1 cut(s) 83
AvaII GGWCC 1 cut(s) 77
BbvI GCAGC 3 cut(s) 19, 47, 154
BfmI CTRYAG 1 cut(s) 33
BisI GCNGC 3 cut(s) 33, 36, 168
BlsI GCNGC 3 cut(s) 34, 37, 169
Bme18I GGWCC 1 cut(s) 77
BmgT120I GGNCC 1 cut(s) 77
BmiI GGNNCC 2 cut(s) 8, 78
BmsI GCATC 1 cut(s) 179
Bsc4I CCNNNNNNNGG 1 cut(s) 18
Bse1I ACTGG 1 cut(s) 89
BseGI GGATG 1 cut(s) 213
BseLI CCNNNNNNNGG 1 cut(s) 18
BseNI ACTGG 1 cut(s) 89
BseRI GAGGAG 1 cut(s) 161
BseXI GCAGC 3 cut(s) 19, 47, 154
Bsh1236I CGCG 1 cut(s) 160
BslI CCNNNNNNNGG 1 cut(s) 18
BspFNI CGCG 1 cut(s) 160
BspLI GGNNCC 2 cut(s) 8, 78
BspMAI CTGCAG 1 cut(s) 37
BsrI ACTGG 1 cut(s) 89
BstF5I GGATG 1 cut(s) 213
BstFNI CGCG 1 cut(s) 160
BstHHI GCGC 1 cut(s) 160
BstMWI GCNNNNNNNGC 3 cut(s) 44, 164, 173
BstSFI CTRYAG 1 cut(s) 33
BstUI CGCG 1 cut(s) 160
BstV1I GCAGC 3 cut(s) 19, 47, 154
BtsCI GGATG 1 cut(s) 213
CfoI GCGC 1 cut(s) 160
Cfr13I GGNCC 1 cut(s) 77
CviAII CATG 1 cut(s) 18
CviJI RGCY 2 cut(s) 32, 176
CviKI_1 RGCY 2 cut(s) 32, 176
Eco47I GGWCC 1 cut(s) 77
EcoO109I RGGNCCY 1 cut(s) 77
FaeI CATG 1 cut(s) 21
FaiI YATR 5 cut(s) 19, 26, 44, 143, 182
FatI CATG 1 cut(s) 17
Fnu4HI GCNGC 3 cut(s) 33, 36, 168
Fsp4HI GCNGC 3 cut(s) 33, 36, 168
GlaI GCGC 1 cut(s) 159
GluI GCNGC 3 cut(s) 33, 36, 168
HhaI GCGC 1 cut(s) 160
Hin1II CATG 1 cut(s) 21
Hin6I GCGC 1 cut(s) 158
HinP1I GCGC 1 cut(s) 158
HphI GGTGA 1 cut(s) 83
Hpy188III TCNNGA 1 cut(s) 80
HpyCH4IV ACGT 1 cut(s) 187
HpyCH4V TGCA 2 cut(s) 35, 170
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 164, 173
HpySE526I ACGT 1 cut(s) 187
Hsp92II CATG 1 cut(s) 21
HspAI GCGC 1 cut(s) 158
LpnPI CCDG 2 cut(s) 70, 93
Lsp1109I GCAGC 3 cut(s) 19, 47, 154
LweI GCATC 1 cut(s) 179
MaeII ACGT 1 cut(s) 187
MluCI AATT 2 cut(s) 124, 132
MnlI CCTC 3 cut(s) 62, 67, 139
MseI TTAA 2 cut(s) 116, 214
MvnI CGCG 1 cut(s) 160
MwoI GCNNNNNNNGC 3 cut(s) 44, 164, 173
NlaIII CATG 1 cut(s) 21
NlaIV GGNNCC 2 cut(s) 8, 78
PkrI GCNGC 3 cut(s) 34, 37, 169
PpuMI RGGWCCY 1 cut(s) 77
PshBI ATTAAT 1 cut(s) 116
Psp1406I AACGTT 1 cut(s) 187
Psp5II RGGWCCY 1 cut(s) 77
PspN4I GGNNCC 2 cut(s) 8, 78
PspPI GGNCC 1 cut(s) 77
PspPPI RGGWCCY 1 cut(s) 77
PstI CTGCAG 1 cut(s) 37
SaqAI TTAA 2 cut(s) 116, 214
SatI GCNGC 3 cut(s) 33, 36, 168
Sau96I GGNCC 1 cut(s) 77
SetI ASST 4 cut(s) 34, 73, 178, 190
SfaNI GCATC 1 cut(s) 179
SfcI CTRYAG 1 cut(s) 33
SgeI CNNG 8 cut(s) 25, 30, 62, 68, 92, 97, 101, 171
SinI GGWCC 1 cut(s) 77
Sse9I AATT 2 cut(s) 124, 132
TaiI ACGT 1 cut(s) 190
TasI AATT 2 cut(s) 124, 132
Tru1I TTAA 2 cut(s) 116, 214
Tru9I TTAA 2 cut(s) 116, 214
TseI GCWGC 3 cut(s) 32, 35, 167
TspDTI ATGAA 1 cut(s) 130
VpaK11BI GGWCC 1 cut(s) 77
VspI ATTAAT 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.