Rh5AG381200

ATPase 11, plasma

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000545
Physical Location & Seq
Reverse (-)
65424661 .. 65428684
4024 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG381200.1

Sequence Viewer

Length: 381 bp
ATGGCAGAGGAGAAGCCTGAAGTGCTTGACGCGGTGCTGAAGGAAACAATTGATTTGGAAAACATACCCATTGAGGAGCTTGAGGAAAAGCAGGGGAAGCCTCCTGACTGGCAAGATTTTGTGGTTATTATTACTCTGCTGGTCATCAACTCCACCATTAGTTTCATCAAGGAAAATAATGCTGGTAATGCTGCAGCAGCTCTCATGGCTCGTCTTGCTCCTAAAGCCAAGATAACTGAGATCCTCAAGCTAGTAAGAAGGCTTTACAGACTCATTCTAGATTCTGCAAAAGAGAGGGAAAATATTGATGGGCGCACCGTTTTCTGCTTCTTCTGGCATATAATATTTACATGCAGCAGCTGCTCATATTTTTGTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

126

Amino Acids

14.4

Weight (kDa)

5.06

Isoelectric Point (pI)

50.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000545)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36571
pyrus_communis pycom02g01560 pycom08g10820 pycom09g05820 pycom13g21850 pycom14g16010
rosa_chinensis RchiOBHm_Chr2g0094861 RchiOBHm_Chr2g0124911 RchiOBHm_Chr2g0138581 RchiOBHm_Chr2g0160851 RchiOBHm_Chr4g0407411
rosa_laevigata RLG00000001652 RLG00000001872 RLG00000002037 RLG00000003076 RLG00000006419 RLG00000016771 RLG00000017383 RLG00000022851 RLG00000030563 RLG00000033869 RLG00000034176
rosa_multiflora Rmu_co8013424.1_g000001 Rmu_co8016716.1_g000001 Rmu_co8183472.1_g000001 Rmu_co8254047.1_g000001 Rmu_co8354891.1_g000001 Rmu_sc0000124.1_g000003 Rmu_sc0002132.1_g000027 Rmu_sc0003007.1_g000011 Rmu_sc0003221.1_g000096 Rmu_sc0003221.1_g000097 Rmu_sc0005119.1_g000004 Rmu_sc0008057.1_g000005 Rmu_sc0034532.1_g000001 Rmu_sc0036406.1_g000001 Rmu_ssc0000008.1_g000009
rosa_roxburghii Rroxscaffold_1G00030520 Rroxscaffold_2G00107360 Rroxscaffold_2G00153420 Rroxscaffold_5G00335750 Rroxscaffold_5G00351760 Rroxscaffold_5G00352080 Rroxscaffold_6G00419090
rosa_rugosa Rorug01G0341800 Rorug01G0341900 Rorug02G0180200 Rorug02G0180300 Rorug03G0186100 Rorug03G0186200 Rorug03G0284800 Rorug04G0104500 Rorug05G0246300 Rorug06G0108400 Rorug06G0471500 Rorug06G0510400
rosa_samantha Rh1AG159000 Rh1CG148200 Rh1CG189900 Rh2AG552800 Rh2BG473900 Rh2BG612100 Rh2BG612300 Rh2DG094500 Rh2DG482600 Rh3BG234000 Rh3CG320000 Rh4AG144200 Rh4BG127900 Rh4DG097300 Rh5AG128900 Rh5AG381200 Rh5BG363000 Rh5DG491900 Rh6AG048400 Rh6BG168100 Rh6CG005800 Rh6DG006000 Rh7AG255100 Rh7BG360600 Rh7CG271700 Rh7CG482300 Rh7DG451200
rosa_wichuraiana Rw4G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 32
AciI CCGC 1 cut(s) 32
AclWI GGATC 1 cut(s) 235
AcuI CTGAAG 2 cut(s) 39, 59
AluBI AGCT 4 cut(s) 79, 200, 250, 360
AluI AGCT 4 cut(s) 79, 200, 250, 360
AlwI GGATC 1 cut(s) 235
AlwNI CAGNNNCTG 1 cut(s) 360
ApeKI GCWGC 6 cut(s) 191, 194, 197, 354, 357, 360
AspLEI GCGC 1 cut(s) 315
BbvI GCAGC 6 cut(s) 178, 206, 209, 347, 366, 369
BccI CCATC 1 cut(s) 302
BfaI CTAG 2 cut(s) 251, 278
BfmI CTRYAG 1 cut(s) 192
BisI GCNGC 6 cut(s) 192, 195, 198, 355, 358, 361
BlsI GCNGC 6 cut(s) 193, 196, 199, 356, 359, 362
BpuEI CTTGAG 2 cut(s) 101, 230
Bse1I ACTGG 1 cut(s) 113
BseMII CTCAG 1 cut(s) 228
BseNI ACTGG 1 cut(s) 113
BseRI GAGGAG 2 cut(s) 23, 89
BseXI GCAGC 6 cut(s) 178, 206, 209, 347, 366, 369
Bsh1236I CGCG 1 cut(s) 32
Bsp143I GATC 1 cut(s) 240
BspACI CCGC 1 cut(s) 32
BspCNI CTCAG 1 cut(s) 229
BspFNI CGCG 1 cut(s) 32
BspMAI CTGCAG 1 cut(s) 196
BspPI GGATC 1 cut(s) 235
BsrI ACTGG 1 cut(s) 113
BssMI GATC 1 cut(s) 240
Bst4CI ACNGT 1 cut(s) 319
BstAPI GCANNNNNTGC 1 cut(s) 360
BstDEI CTNAG 1 cut(s) 237
BstFNI CGCG 1 cut(s) 32
BstHHI GCGC 1 cut(s) 315
BstKTI GATC 1 cut(s) 243
BstMBI GATC 1 cut(s) 240
BstMWI GCNNNNNNNGC 8 cut(s) 22, 97, 188, 197, 206, 215, 224, 360
BstNSI RCATGY 1 cut(s) 354
BstSFI CTRYAG 1 cut(s) 192
BstUI CGCG 1 cut(s) 32
BstV1I GCAGC 6 cut(s) 178, 206, 209, 347, 366, 369
BstX2I RGATCY 1 cut(s) 240
BstYI RGATCY 1 cut(s) 240
CaiI CAGNNNCTG 1 cut(s) 360
CfoI GCGC 1 cut(s) 315
CseI GACGC 1 cut(s) 38
CviAII CATG 2 cut(s) 205, 351
CviJI RGCY 9 cut(s) 16, 79, 100, 200, 209, 227, 250, 262, 360
CviKI_1 RGCY 9 cut(s) 16, 79, 100, 200, 209, 227, 250, 262, 360
DdeI CTNAG 1 cut(s) 237
DpnI GATC 1 cut(s) 242
DpnII GATC 1 cut(s) 240
Eco57I CTGAAG 2 cut(s) 39, 59
FaeI CATG 2 cut(s) 208, 354
FaiI YATR 6 cut(s) 65, 206, 339, 341, 352, 367
FatI CATG 2 cut(s) 204, 350
Fnu4HI GCNGC 6 cut(s) 192, 195, 198, 355, 358, 361
Fsp4HI GCNGC 6 cut(s) 192, 195, 198, 355, 358, 361
FspBI CTAG 2 cut(s) 251, 278
GlaI GCGC 1 cut(s) 314
GluI GCNGC 6 cut(s) 192, 195, 198, 355, 358, 361
HgaI GACGC 1 cut(s) 38
HhaI GCGC 1 cut(s) 315
Hin1II CATG 2 cut(s) 208, 354
Hin6I GCGC 1 cut(s) 313
HinP1I GCGC 1 cut(s) 313
HinfI GANTC 2 cut(s) 270, 281
Hpy188III TCNNGA 2 cut(s) 104, 278
HpyAV CCTTC 2 cut(s) 34, 252
HpyCH4III ACNGT 1 cut(s) 319
HpyCH4V TGCA 3 cut(s) 194, 287, 354
HpyF10VI GCNNNNNNNGC 8 cut(s) 22, 97, 188, 197, 206, 215, 224, 360
HpyF3I CTNAG 1 cut(s) 237
Hsp92II CATG 2 cut(s) 208, 354
HspAI GCGC 1 cut(s) 313
Kzo9I GATC 1 cut(s) 240
LmnI GCTCC 2 cut(s) 76, 223
LpnPI CCDG 7 cut(s) 30, 77, 94, 117, 125, 168, 319
Lsp1109I GCAGC 6 cut(s) 178, 206, 209, 347, 366, 369
MaeI CTAG 2 cut(s) 251, 278
MalI GATC 1 cut(s) 242
MboI GATC 1 cut(s) 240
MboII GAAGA 1 cut(s) 322
MfeI CAATTG 1 cut(s) 48
MflI RGATCY 1 cut(s) 240
MluCI AATT 1 cut(s) 48
MlyI GAGTC 1 cut(s) 264
MnlI CCTC 5 cut(s) 67, 76, 111, 254, 288
MspA1I CMGCKG 1 cut(s) 360
MunI CAATTG 1 cut(s) 48
MvnI CGCG 1 cut(s) 32
MwoI GCNNNNNNNGC 8 cut(s) 22, 97, 188, 197, 206, 215, 224, 360
NdeII GATC 1 cut(s) 240
NlaIII CATG 2 cut(s) 208, 354
NspI RCATGY 1 cut(s) 354
PfeI GAWTC 1 cut(s) 281
PkrI GCNGC 6 cut(s) 193, 196, 199, 356, 359, 362
PleI GAGTC 1 cut(s) 264
PpsI GAGTC 1 cut(s) 264
PstI CTGCAG 1 cut(s) 196
PstNI CAGNNNCTG 1 cut(s) 360
PsuI RGATCY 1 cut(s) 240
PvuII CAGCTG 1 cut(s) 360
SatI GCNGC 6 cut(s) 192, 195, 198, 355, 358, 361
Sau3AI GATC 1 cut(s) 240
SchI GAGTC 1 cut(s) 264
SetI ASST 4 cut(s) 81, 202, 252, 362
SfcI CTRYAG 1 cut(s) 192
SmlI CTYRAG 2 cut(s) 80, 245
SmoI CTYRAG 2 cut(s) 80, 245
Sse9I AATT 1 cut(s) 48
SsiI CCGC 1 cut(s) 32
SspI AATATT 2 cut(s) 304, 345
SspMI CTAG 2 cut(s) 251, 278
TaaI ACNGT 1 cut(s) 319
TasI AATT 1 cut(s) 48
TfiI GAWTC 1 cut(s) 281
TseI GCWGC 6 cut(s) 191, 194, 197, 354, 357, 360
TspDTI ATGAA 1 cut(s) 154
XbaI TCTAGA 1 cut(s) 277
XceI RCATGY 1 cut(s) 354
XspI CTAG 2 cut(s) 251, 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.