Rmu_sc0003221.1_g000096

Plasma membrane ATPase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003221.1
OG0000545
Physical Location & Seq
Forward (+)
431016 .. 433939
2924 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003221.1_g000096.1.cds

Sequence Viewer

Length: 1275 bp
atggccgcaatggatacatcaattgcccttcagcctattacgcaggaagctgttgatctggttcttgagaacatccctgtggaggaagtttttgaacaattgaaatgtacagcagagggtctcaattctgaggaggtgcaaaagcgtctggaggtttttggtttcaacaaacttcaagagaaaaaggtttcaaagaacttgtttcagattgtgatcttttcgcctattgaaagtaaaatacttaactttctggggttcatgtggaaccctttgtcttgggttatggaagcagctgcaataatgtcaataactctcgcatatggaggcgggagaaaaagagacgttgaggatttctgtggaatcctagcactactccttatcaattcaacaataagcttcatcgaggaaaacaatgctggaaatgcagctgcagcgcttatggcccggcttgctccaaaagccaaggttttgcgtgatgggaaatggaatgaggaagatgcagctgtgctggttcctggagacattattagtatcaagttaggagatataattcctgctgatgctcgcctgcttcaaggagatcctttgaagatcgaccagtctgctcttacaggagagtctctcccggtaactaagcatgccggtgaaggagtatactctggctcaacatgtaaacaaggtgaaattgaagcagttgtcatcgcaacaggagtacataccttctttggaaaagctgctcatcttgtggaaaacacaacacatgttgggcactttcagaaggtcttaacagccattggaaacttttgcatctgctcaattgccataggtattgtgattgaactaattgtcctagttcgtcaaggaaagagttatcgttctaaaatagataaccttcttgtcctacttattggcggcatcccaattgctatgccaactgttctctctgtcaccatggccattggttctcatcgtttgtctcagcagggtgcaatcacaaagagaatgacagccattgaagaaatggctgggatggacgtgctctgcagtgataaaacaggaactttaactctcaacaagttaacagtggacaagaatctgatagaggtgtttgctaaagatgttgaaaaagactcggttgtattgatggctgcaagagcttcaaggttggaaaatcaagatgccattgatgcagcaattgttgcaatgctggctgattctaaggaggtagtagaccttataactgaaaatgttaatgcaattcttacaggcttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

424

Amino Acids

45.64

Weight (kDa)

5.07

Isoelectric Point (pI)

36.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000545)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36571
pyrus_communis pycom02g01560 pycom08g10820 pycom09g05820 pycom13g21850 pycom14g16010
rosa_chinensis RchiOBHm_Chr2g0094861 RchiOBHm_Chr2g0124911 RchiOBHm_Chr2g0138581 RchiOBHm_Chr2g0160851 RchiOBHm_Chr4g0407411
rosa_laevigata RLG00000001652 RLG00000001872 RLG00000002037 RLG00000003076 RLG00000006419 RLG00000016771 RLG00000017383 RLG00000022851 RLG00000030563 RLG00000033869 RLG00000034176
rosa_multiflora Rmu_co8013424.1_g000001 Rmu_co8016716.1_g000001 Rmu_co8183472.1_g000001 Rmu_co8254047.1_g000001 Rmu_co8354891.1_g000001 Rmu_sc0000124.1_g000003 Rmu_sc0002132.1_g000027 Rmu_sc0003007.1_g000011 Rmu_sc0003221.1_g000096 Rmu_sc0003221.1_g000097 Rmu_sc0005119.1_g000004 Rmu_sc0008057.1_g000005 Rmu_sc0034532.1_g000001 Rmu_sc0036406.1_g000001 Rmu_ssc0000008.1_g000009
rosa_roxburghii Rroxscaffold_1G00030520 Rroxscaffold_2G00107360 Rroxscaffold_2G00153420 Rroxscaffold_5G00335750 Rroxscaffold_5G00351760 Rroxscaffold_5G00352080 Rroxscaffold_6G00419090
rosa_rugosa Rorug01G0341800 Rorug01G0341900 Rorug02G0180200 Rorug02G0180300 Rorug03G0186100 Rorug03G0186200 Rorug03G0284800 Rorug04G0104500 Rorug05G0246300 Rorug06G0108400 Rorug06G0471500 Rorug06G0510400
rosa_samantha Rh1AG159000 Rh1CG148200 Rh1CG189900 Rh2AG552800 Rh2BG473900 Rh2BG612100 Rh2BG612300 Rh2DG094500 Rh2DG482600 Rh3BG234000 Rh3CG320000 Rh4AG144200 Rh4BG127900 Rh4DG097300 Rh5AG128900 Rh5AG381200 Rh5BG363000 Rh5DG491900 Rh6AG048400 Rh6BG168100 Rh6CG005800 Rh6DG006000 Rh7AG255100 Rh7BG360600 Rh7CG271700 Rh7CG482300 Rh7DG451200
rosa_wichuraiana Rw4G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1238
AccI GTMKAC 2 cut(s) 654, 1230
AciI CCGC 3 cut(s) 6, 327, 912
AclWI GGATC 1 cut(s) 575
AcoI YGGCCR 2 cut(s) 3, 954
AcuI CTGAAG 1 cut(s) 14
AfaI GTAC 2 cut(s) 109, 714
AfeI AGCGCT 1 cut(s) 435
AfiI CCNNNNNNNGG 1 cut(s) 82
AflIII ACRYGT 2 cut(s) 668, 760
AjiI CACGTC 1 cut(s) 1036
AjnI CCWGG 1 cut(s) 514
AloI GAACNNNNNNTCC 2 cut(s) 831, 863
AluBI AGCT 7 cut(s) 50, 293, 396, 428, 503, 734, 1157
AluI AGCT 7 cut(s) 50, 293, 396, 428, 503, 734, 1157
Alw21I GWGCWC 1 cut(s) 1041
Alw26I GTCTC 5 cut(s) 125, 333, 513, 624, 981
AlwI GGATC 1 cut(s) 575
Aor51HI AGCGCT 1 cut(s) 435
AoxI GGCC 3 cut(s) 3, 441, 954
ApeKI GCWGC 9 cut(s) 290, 293, 425, 428, 431, 500, 734, 1148, 1190
AspLEI GCGC 1 cut(s) 436
AspS9I GGNCC 1 cut(s) 442
AsuC2I CCSGG 2 cut(s) 445, 626
AsuHPI GGTGA 3 cut(s) 656, 692, 940
BaeGI GKGCMC 1 cut(s) 771
BalI TGGCCA 1 cut(s) 956
Bbv12I GWGCWC 1 cut(s) 1041
BbvI GCAGC 9 cut(s) 280, 302, 415, 437, 443, 512, 721, 1135, 1202
BccI CCATC 3 cut(s) 470, 1024, 1138
BcgI CGANNNNNNTGC 2 cut(s) 584, 618
BciT130I CCWGG 1 cut(s) 516
BciVI GTATCC 1 cut(s) 7
BcnI CCSGG 2 cut(s) 445, 626
BcoDI GTCTC 5 cut(s) 125, 333, 513, 624, 981
BfaI CTAG 2 cut(s) 365, 851
BfmI CTRYAG 2 cut(s) 429, 1042
BfoI RGCGCY 1 cut(s) 437
BfuI GTATCC 1 cut(s) 7
Bme1390I CCNGG 3 cut(s) 445, 516, 626
BmgBI CACGTC 1 cut(s) 1036
BmgT120I GGNCC 1 cut(s) 442
BmiI GGNNCC 2 cut(s) 266, 513
BmrFI CCNGG 3 cut(s) 445, 516, 626
BmsI GCATC 6 cut(s) 487, 550, 816, 924, 1168, 1177
BplI GAGNNNNNCTC 2 cut(s) 606, 638
BpmI CTGGAG 2 cut(s) 170, 537
BpuEI CTTGAG 1 cut(s) 86
BpuMI CCSGG 2 cut(s) 445, 626
BsaBI GATNNNNATC 1 cut(s) 212
BsaI GGTCTC 1 cut(s) 125
BsaJI CCNNGG 2 cut(s) 462, 951
Bsc4I CCNNNNNNNGG 1 cut(s) 82
Bse118I RCCGGY 1 cut(s) 641
Bse1I ACTGG 1 cut(s) 598
Bse3DI GCAATG 2 cut(s) 15, 1209
Bse8I GATNNNNATC 1 cut(s) 212
BseBI CCWGG 1 cut(s) 516
BseDI CCNNGG 2 cut(s) 462, 951
BseGI GGATG 3 cut(s) 72, 915, 1035
BseJI GATNNNNATC 1 cut(s) 212
BseLI CCNNNNNNNGG 1 cut(s) 82
BseMI GCAATG 2 cut(s) 15, 1209
BseMII CTCAG 2 cut(s) 120, 992
BseNI ACTGG 1 cut(s) 598
BseRI GAGGAG 1 cut(s) 146
BseSI GKGCMC 1 cut(s) 771
BseXI GCAGC 9 cut(s) 280, 302, 415, 437, 443, 512, 721, 1135, 1202
BseYI CCCAGC 1 cut(s) 1025
BshFI GGCC 3 cut(s) 5, 443, 956
BsiHKAI GWGCWC 1 cut(s) 1041
BsiSI CCGG 3 cut(s) 445, 626, 642
BslI CCNNNNNNNGG 1 cut(s) 82
BsmAI GTCTC 5 cut(s) 125, 333, 513, 624, 981
BsmBI CGTCTC 1 cut(s) 333
BsnI GGCC 3 cut(s) 5, 443, 956
Bso31I GGTCTC 1 cut(s) 125
Bsp1286I GDGCHC 2 cut(s) 771, 1041
Bsp1407I TGTACA 1 cut(s) 107
Bsp143I GATC 4 cut(s) 55, 213, 580, 591
Bsp19I CCATGG 1 cut(s) 951
BspACI CCGC 3 cut(s) 6, 327, 912
BspANI GGCC 3 cut(s) 5, 443, 956
BspCNI CTCAG 2 cut(s) 121, 991
BspLI GGNNCC 2 cut(s) 266, 513
BspMAI CTGCAG 2 cut(s) 433, 1046
BspPI GGATC 1 cut(s) 575
BspTNI GGTCTC 1 cut(s) 125
BsrDI GCAATG 2 cut(s) 15, 1209
BsrFI RCCGGY 1 cut(s) 641
BsrGI TGTACA 1 cut(s) 107
BsrI ACTGG 1 cut(s) 598
BssAI RCCGGY 1 cut(s) 641
BssECI CCNNGG 2 cut(s) 462, 951
BssMI GATC 4 cut(s) 55, 213, 580, 591
BssNAI GTATAC 1 cut(s) 655
BssT1I CCWWGG 2 cut(s) 462, 951
Bst1107I GTATAC 1 cut(s) 655
Bst2UI CCWGG 1 cut(s) 516
Bst4CI ACNGT 2 cut(s) 937, 1084
BstAPI GCANNNNNTGC 1 cut(s) 1199
BstAUI TGTACA 1 cut(s) 107
BstC8I GCNNGC 5 cut(s) 450, 565, 569, 639, 1209
BstDEI CTNAG 4 cut(s) 129, 633, 978, 1218
BstDSI CCRYGG 1 cut(s) 951
BstF5I GGATG 3 cut(s) 72, 915, 1035
BstH2I RGCGCY 1 cut(s) 437
BstHHI GCGC 1 cut(s) 436
BstKTI GATC 4 cut(s) 58, 216, 583, 594
BstMAI GTCTC 5 cut(s) 125, 333, 513, 624, 981
BstMBI GATC 4 cut(s) 55, 213, 580, 591
BstNI CCWGG 1 cut(s) 516
BstNSI RCATGY 3 cut(s) 641, 672, 764
BstSCI CCNGG 3 cut(s) 443, 514, 624
BstSFI CTRYAG 2 cut(s) 429, 1042
BstSLI GKGCMC 1 cut(s) 771
BstV1I GCAGC 9 cut(s) 280, 302, 415, 437, 443, 512, 721, 1135, 1202
BstX2I RGATCY 1 cut(s) 580
BstYI RGATCY 1 cut(s) 580
BstZ17I GTATAC 1 cut(s) 655
BsuI GTATCC 1 cut(s) 7
BsuRI GGCC 3 cut(s) 5, 443, 956
BtgI CCRYGG 1 cut(s) 951
BtgZI GCGATG 1 cut(s) 685
BtrI CACGTC 1 cut(s) 1036
BtsCI GGATG 3 cut(s) 72, 915, 1035
BtsI GCAGTG 1 cut(s) 1051
BtsIMutI CAGTG 2 cut(s) 1051, 1089
Cac8I GCNNGC 5 cut(s) 450, 565, 569, 639, 1209
CfoI GCGC 1 cut(s) 436
Cfr10I RCCGGY 1 cut(s) 641
Cfr13I GGNCC 1 cut(s) 442
CseI GACGC 1 cut(s) 134
Csp6I GTAC 2 cut(s) 108, 713
CviAII CATG 5 cut(s) 259, 638, 669, 761, 952
CviQI GTAC 2 cut(s) 108, 713
DdeI CTNAG 4 cut(s) 129, 633, 978, 1218
DpnI GATC 4 cut(s) 57, 215, 582, 593
DpnII GATC 4 cut(s) 55, 213, 580, 591
EaeI YGGCCR 2 cut(s) 3, 954
Eco130I CCWWGG 2 cut(s) 462, 951
Eco31I GGTCTC 1 cut(s) 125
Eco47III AGCGCT 1 cut(s) 435
Eco57I CTGAAG 1 cut(s) 14
EcoRII CCWGG 1 cut(s) 514
EcoT14I CCWWGG 2 cut(s) 462, 951
ErhI CCWWGG 2 cut(s) 462, 951
Esp3I CGTCTC 1 cut(s) 333
FaeI CATG 5 cut(s) 262, 641, 672, 764, 955
FatI CATG 5 cut(s) 258, 637, 668, 760, 951
FauI CCCGC 1 cut(s) 320
FauNDI CATATG 1 cut(s) 319
FblI GTMKAC 2 cut(s) 654, 1230
FokI GGATG 3 cut(s) 59, 902, 1042
FspBI CTAG 2 cut(s) 365, 851
GlaI GCGC 1 cut(s) 435
GsaI CCCAGC 1 cut(s) 1029
GsuI CTGGAG 2 cut(s) 170, 537
HaeII RGCGCY 1 cut(s) 437
HaeIII GGCC 3 cut(s) 5, 443, 956
HapII CCGG 3 cut(s) 445, 626, 642
HgaI GACGC 1 cut(s) 134
HhaI GCGC 1 cut(s) 436
Hin1II CATG 5 cut(s) 262, 641, 672, 764, 955
Hin6I GCGC 1 cut(s) 434
HinP1I GCGC 1 cut(s) 434
HincII GTYRAC 1 cut(s) 1080
HindII GTYRAC 1 cut(s) 1080
HindIII AAGCTT 1 cut(s) 394
HinfI GANTC 5 cut(s) 360, 617, 1093, 1130, 1214
HpaI GTTAAC 1 cut(s) 1080
HpaII CCGG 3 cut(s) 445, 626, 642
HphI GGTGA 3 cut(s) 656, 692, 940
Hpy166II GTNNAC 5 cut(s) 655, 674, 1080, 1087, 1231
Hpy188I TCNGA 4 cut(s) 130, 207, 777, 1098
Hpy188III TCNNGA 4 cut(s) 65, 149, 176, 1175
Hpy8I GTNNAC 5 cut(s) 655, 674, 1080, 1087, 1231
HpyAV CCTTC 5 cut(s) 38, 641, 730, 772, 902
HpyCH4III ACNGT 2 cut(s) 937, 1084
HpyCH4IV ACGT 2 cut(s) 342, 1035
HpyF3I CTNAG 4 cut(s) 129, 633, 978, 1218
HpySE526I ACGT 2 cut(s) 342, 1035
Hsp92II CATG 5 cut(s) 262, 641, 672, 764, 955
HspAI GCGC 1 cut(s) 434
KspAI GTTAAC 1 cut(s) 1080
Kzo9I GATC 4 cut(s) 55, 213, 580, 591
LmnI GCTCC 1 cut(s) 457
Lsp1109I GCAGC 9 cut(s) 280, 302, 415, 437, 443, 512, 721, 1135, 1202
LweI GCATC 6 cut(s) 487, 550, 816, 924, 1168, 1177
MaeI CTAG 2 cut(s) 365, 851
MaeII ACGT 2 cut(s) 342, 1035
MaeIII GTNAC 2 cut(s) 628, 946
MalI GATC 4 cut(s) 57, 215, 582, 593
MboI GATC 4 cut(s) 55, 213, 580, 591
MboII GAAGA 3 cut(s) 506, 601, 1028
MfeI CAATTG 5 cut(s) 21, 98, 816, 921, 1194
MflI RGATCY 1 cut(s) 580
MhlI GDGCHC 2 cut(s) 771, 1041
MlsI TGGCCA 1 cut(s) 956
MluNI TGGCCA 1 cut(s) 956
MlyI GAGTC 2 cut(s) 626, 1124
MmeI TCCRAC 1 cut(s) 1146
Mox20I TGGCCA 1 cut(s) 956
MscI TGGCCA 1 cut(s) 956
MseI TTAA 5 cut(s) 243, 785, 1064, 1079, 1251
MslI CAYNNNNRTG 2 cut(s) 77, 642
Msp20I TGGCCA 1 cut(s) 956
MspA1I CMGCKG 3 cut(s) 293, 428, 503
MspI CCGG 3 cut(s) 445, 626, 642
MspR9I CCNGG 3 cut(s) 445, 516, 626
MunI CAATTG 5 cut(s) 21, 98, 816, 921, 1194
MvaI CCWGG 1 cut(s) 516
NciI CCSGG 2 cut(s) 445, 626
NcoI CCATGG 1 cut(s) 951
NdeI CATATG 1 cut(s) 319
NdeII GATC 4 cut(s) 55, 213, 580, 591
NlaIII CATG 5 cut(s) 262, 641, 672, 764, 955
NlaIV GGNNCC 2 cut(s) 266, 513
NmuCI GTSAC 1 cut(s) 946
NspI RCATGY 3 cut(s) 641, 672, 764
PaeI GCATGC 1 cut(s) 641
PciI ACATGT 2 cut(s) 668, 760
PfeI GAWTC 3 cut(s) 360, 1093, 1214
PfoI TCCNGGA 1 cut(s) 514
PleI GAGTC 2 cut(s) 625, 1124
PpsI GAGTC 2 cut(s) 625, 1124
PscI ACATGT 2 cut(s) 668, 760
PsiI TTATAA 1 cut(s) 1238
Psp6I CCWGG 1 cut(s) 514
PspFI CCCAGC 1 cut(s) 1025
PspGI CCWGG 1 cut(s) 514
PspN4I GGNNCC 2 cut(s) 266, 513
PspPI GGNCC 1 cut(s) 442
PstI CTGCAG 2 cut(s) 433, 1046
PsuI RGATCY 1 cut(s) 580
PvuII CAGCTG 3 cut(s) 293, 428, 503
RsaI GTAC 2 cut(s) 109, 714
RsaNI GTAC 2 cut(s) 108, 713
RseI CAYNNNNRTG 2 cut(s) 77, 642
SaqAI TTAA 5 cut(s) 243, 785, 1064, 1079, 1251
Sau3AI GATC 4 cut(s) 55, 213, 580, 591
Sau96I GGNCC 1 cut(s) 442
SchI GAGTC 2 cut(s) 626, 1124
ScrFI CCNGG 3 cut(s) 445, 516, 626
SduI GDGCHC 2 cut(s) 771, 1041
SfaNI GCATC 6 cut(s) 487, 550, 816, 924, 1168, 1177
SfcI CTRYAG 2 cut(s) 429, 1042
SmiMI CAYNNNNRTG 2 cut(s) 77, 642
SmlI CTYRAG 1 cut(s) 65
SmoI CTYRAG 1 cut(s) 65
SphI GCATGC 1 cut(s) 641
SsiI CCGC 3 cut(s) 6, 327, 912
SspMI CTAG 2 cut(s) 365, 851
StyD4I CCNGG 3 cut(s) 443, 514, 624
StyI CCWWGG 2 cut(s) 462, 951
TaaI ACNGT 2 cut(s) 937, 1084
TaiI ACGT 2 cut(s) 345, 1038
TaqI TCGA 2 cut(s) 402, 594
TatI WGTACW 2 cut(s) 107, 712
TauI GCSGC 2 cut(s) 8, 915
TfiI GAWTC 3 cut(s) 360, 1093, 1214
Tru1I TTAA 5 cut(s) 243, 785, 1064, 1079, 1251
Tru9I TTAA 5 cut(s) 243, 785, 1064, 1079, 1251
TscAI CASTG 2 cut(s) 1051, 1089
TseFI GTSAC 1 cut(s) 946
TseI GCWGC 9 cut(s) 290, 293, 425, 428, 431, 500, 734, 1148, 1190
Tsp45I GTSAC 1 cut(s) 946
TspDTI ATGAA 2 cut(s) 247, 388
TspRI CASTG 2 cut(s) 1051, 1089
XceI RCATGY 3 cut(s) 641, 672, 764
XcmI CCANNNNNNNNNTGG 1 cut(s) 1018
XmiI GTMKAC 2 cut(s) 654, 1230
XspI CTAG 2 cut(s) 365, 851
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.