RLG00000022851

Plasma membrane ATPase 1

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
13306365 .. 13308130
1766 bp
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UTR
Exon/CDS
Intron
RLM00000022851

Sequence Viewer

Length: 330 bp
ATGAAGAAGGGATCCATAGCTCAGTGTATTTACTTGGTTGATGAGTCTGGTAATGCAGTGTGCTTCTGGCTTTTGGTAATGCAGTGTCCTTTTGGGAAGCCTCCTGACTGGCAAGATTTTGCGGTTATTATTACTCTGCTGGTCATCAACTCCACCATTAGTTTCATCAAGGAAAATAATGCGGGTAATGCTGCAGCAGCTCTCATGGCTCGTCTTGCTCCTAAAGCCAAGAAATGGTCCAAGATCATTGGGCAAGCACGCCAAAGTGTCGAAGTTCTTAAAGATCAGGAAGTGATTCAAACCGTTCTTAATATATTACAGGATGTATAG

Protein Analysis

110

Amino Acids

12.02

Weight (kDa)

8.5

Isoelectric Point (pI)

29.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000545)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36571
pyrus_communis pycom02g01560 pycom08g10820 pycom09g05820 pycom13g21850 pycom14g16010
rosa_chinensis RchiOBHm_Chr2g0094861 RchiOBHm_Chr2g0124911 RchiOBHm_Chr2g0138581 RchiOBHm_Chr2g0160851 RchiOBHm_Chr4g0407411
rosa_laevigata RLG00000001652 RLG00000001872 RLG00000002037 RLG00000003076 RLG00000006419 RLG00000016771 RLG00000017383 RLG00000022851 RLG00000030563 RLG00000033869 RLG00000034176
rosa_multiflora Rmu_co8013424.1_g000001 Rmu_co8016716.1_g000001 Rmu_co8183472.1_g000001 Rmu_co8254047.1_g000001 Rmu_co8354891.1_g000001 Rmu_sc0000124.1_g000003 Rmu_sc0002132.1_g000027 Rmu_sc0003007.1_g000011 Rmu_sc0003221.1_g000096 Rmu_sc0003221.1_g000097 Rmu_sc0005119.1_g000004 Rmu_sc0008057.1_g000005 Rmu_sc0034532.1_g000001 Rmu_sc0036406.1_g000001 Rmu_ssc0000008.1_g000009
rosa_roxburghii Rroxscaffold_1G00030520 Rroxscaffold_2G00107360 Rroxscaffold_2G00153420 Rroxscaffold_5G00335750 Rroxscaffold_5G00351760 Rroxscaffold_5G00352080 Rroxscaffold_6G00419090
rosa_rugosa Rorug01G0341800 Rorug01G0341900 Rorug02G0180200 Rorug02G0180300 Rorug03G0186100 Rorug03G0186200 Rorug03G0284800 Rorug04G0104500 Rorug05G0246300 Rorug06G0108400 Rorug06G0471500 Rorug06G0510400
rosa_samantha Rh1AG159000 Rh1CG148200 Rh1CG189900 Rh2AG552800 Rh2BG473900 Rh2BG612100 Rh2BG612300 Rh2DG094500 Rh2DG482600 Rh3BG234000 Rh3CG320000 Rh4AG144200 Rh4BG127900 Rh4DG097300 Rh5AG128900 Rh5AG381200 Rh5BG363000 Rh5DG491900 Rh6AG048400 Rh6BG168100 Rh6CG005800 Rh6DG006000 Rh7AG255100 Rh7BG360600 Rh7CG271700 Rh7CG482300 Rh7DG451200
rosa_wichuraiana Rw4G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 234
AciI CCGC 2 cut(s) 122, 182
AclWI GGATC 2 cut(s) 6, 19
AfiI CCNNNNNNNGG 1 cut(s) 234
AgsI TTSAA 1 cut(s) 299
AluBI AGCT 2 cut(s) 20, 200
AluI AGCT 2 cut(s) 20, 200
AlwI GGATC 2 cut(s) 6, 19
ApeKI GCWGC 3 cut(s) 191, 194, 197
Asp700I GAANNNNTTC 1 cut(s) 294
AspS9I GGNCC 1 cut(s) 237
AvaII GGWCC 1 cut(s) 237
BamHI GGATCC 1 cut(s) 11
BbvI GCAGC 3 cut(s) 178, 206, 209
BfmI CTRYAG 1 cut(s) 192
BisI GCNGC 3 cut(s) 192, 195, 198
BlsI GCNGC 3 cut(s) 193, 196, 199
Bme18I GGWCC 1 cut(s) 237
BmgT120I GGNCC 1 cut(s) 237
BmiI GGNNCC 1 cut(s) 13
Bsc4I CCNNNNNNNGG 1 cut(s) 234
Bse1I ACTGG 1 cut(s) 113
BseGI GGATG 1 cut(s) 328
BseLI CCNNNNNNNGG 1 cut(s) 234
BseMII CTCAG 1 cut(s) 35
BseNI ACTGG 1 cut(s) 113
BseXI GCAGC 3 cut(s) 178, 206, 209
BslI CCNNNNNNNGG 1 cut(s) 234
Bsp143I GATC 3 cut(s) 11, 243, 283
BspACI CCGC 2 cut(s) 122, 182
BspCNI CTCAG 1 cut(s) 34
BspLI GGNNCC 1 cut(s) 13
BspMAI CTGCAG 1 cut(s) 196
BspPI GGATC 2 cut(s) 6, 19
BsrI ACTGG 1 cut(s) 113
BssMI GATC 3 cut(s) 11, 243, 283
Bst4CI ACNGT 1 cut(s) 304
BstC8I GCNNGC 2 cut(s) 255, 259
BstDEI CTNAG 1 cut(s) 21
BstF5I GGATG 1 cut(s) 328
BstKTI GATC 3 cut(s) 14, 246, 286
BstMBI GATC 3 cut(s) 11, 243, 283
BstMWI GCNNNNNNNGC 5 cut(s) 188, 197, 206, 215, 224
BstSFI CTRYAG 1 cut(s) 192
BstV1I GCAGC 3 cut(s) 178, 206, 209
BstX2I RGATCY 1 cut(s) 11
BstYI RGATCY 1 cut(s) 11
BtsCI GGATG 1 cut(s) 328
BtsI GCAGTG 2 cut(s) 63, 89
BtsIMutI CAGTG 3 cut(s) 29, 63, 89
Cac8I GCNNGC 2 cut(s) 255, 259
Cfr13I GGNCC 1 cut(s) 237
CviAII CATG 1 cut(s) 205
CviJI RGCY 6 cut(s) 20, 70, 100, 200, 209, 227
CviKI_1 RGCY 6 cut(s) 20, 70, 100, 200, 209, 227
DdeI CTNAG 1 cut(s) 21
DpnI GATC 3 cut(s) 13, 245, 285
DpnII GATC 3 cut(s) 11, 243, 283
Eco47I GGWCC 1 cut(s) 237
FaeI CATG 1 cut(s) 208
FaiI YATR 4 cut(s) 17, 206, 314, 328
FatI CATG 1 cut(s) 204
FauI CCCGC 1 cut(s) 175
Fnu4HI GCNGC 3 cut(s) 192, 195, 198
Fsp4HI GCNGC 3 cut(s) 192, 195, 198
GluI GCNGC 3 cut(s) 192, 195, 198
Hin1II CATG 1 cut(s) 208
HinfI GANTC 2 cut(s) 44, 295
Hpy188III TCNNGA 2 cut(s) 104, 287
HpyCH4III ACNGT 1 cut(s) 304
HpyCH4V TGCA 3 cut(s) 56, 82, 194
HpyF10VI GCNNNNNNNGC 5 cut(s) 188, 197, 206, 215, 224
HpyF3I CTNAG 1 cut(s) 21
Hsp92II CATG 1 cut(s) 208
Kzo9I GATC 3 cut(s) 11, 243, 283
LmnI GCTCC 1 cut(s) 223
LpnPI CCDG 7 cut(s) 33, 52, 94, 117, 125, 272, 305
Lsp1109I GCAGC 3 cut(s) 178, 206, 209
MalI GATC 3 cut(s) 13, 245, 285
MboI GATC 3 cut(s) 11, 243, 283
MboII GAAGA 1 cut(s) 16
MflI RGATCY 1 cut(s) 11
MlyI GAGTC 1 cut(s) 53
MnlI CCTC 1 cut(s) 111
MroXI GAANNNNTTC 1 cut(s) 294
MseI TTAA 2 cut(s) 279, 309
MwoI GCNNNNNNNGC 5 cut(s) 188, 197, 206, 215, 224
NdeII GATC 3 cut(s) 11, 243, 283
NlaIII CATG 1 cut(s) 208
NlaIV GGNNCC 1 cut(s) 13
PdmI GAANNNNTTC 1 cut(s) 294
PfeI GAWTC 1 cut(s) 295
PflMI CCANNNNNTGG 1 cut(s) 234
PkrI GCNGC 3 cut(s) 193, 196, 199
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
PspN4I GGNNCC 1 cut(s) 13
PspPI GGNCC 1 cut(s) 237
PstI CTGCAG 1 cut(s) 196
PsuI RGATCY 1 cut(s) 11
SaqAI TTAA 2 cut(s) 279, 309
SatI GCNGC 3 cut(s) 192, 195, 198
Sau3AI GATC 3 cut(s) 11, 243, 283
Sau96I GGNCC 1 cut(s) 237
SchI GAGTC 1 cut(s) 53
SetI ASST 2 cut(s) 22, 202
SfcI CTRYAG 1 cut(s) 192
SinI GGWCC 1 cut(s) 237
SsiI CCGC 2 cut(s) 122, 182
TaaI ACNGT 1 cut(s) 304
TaqI TCGA 1 cut(s) 270
TfiI GAWTC 1 cut(s) 295
Tru1I TTAA 2 cut(s) 279, 309
Tru9I TTAA 2 cut(s) 279, 309
TscAI CASTG 3 cut(s) 29, 63, 89
TseI GCWGC 3 cut(s) 191, 194, 197
TspDTI ATGAA 2 cut(s) 17, 154
TspRI CASTG 3 cut(s) 29, 63, 89
Van91I CCANNNNNTGG 1 cut(s) 234
VpaK11BI GGWCC 1 cut(s) 237
XmnI GAANNNNTTC 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.