Rmu_sc0000124.1_g000003

ATPase 11, plasma

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000124.1
OG0000545
Physical Location & Seq
Reverse (-)
14350 .. 16670
2321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000124.1_g000003.1.cds

Sequence Viewer

Length: 711 bp
atggcggacgagaagcctgaagtgcttgacgtggtgctgaaggaaacagttgatttggaaaacatacccattgaggaggtgcttgagaatatgagatgtagcaaagaaggtctcagcagtgaggctgctgatgaaagattagccatttttgggcataacaagcttgatgaaaagcaggggaagcctcctaactggcaagattttgcggttattattactctgctggtcatcaactccaccattagtttcatcaaggaaaataatgcgggtaatgctgcagcagctctcatggctcgttttgctcctaaagccaagcttcgggccaccacctccatcaagtctccaccgccatcagagaagataggagcactgcatccggattcgacctcctccgagcgccgccgtcacccgaaccatactctctctcccccagactctctctctctctttgccatggctgctccggcgctccaccttcggattctgggccatctagtctttgtttctcaatccggatcttggcagggtcttaactggggaacccacggcgacgaagacgtacggtggttgaggttgaggtcggtggtccggtcctatcaaccttgtttcgccaactcttcccatcttgacgaagacgatgacgatccgaccaatcctgcaccggcctcacactcggtgaaccccgtgaatgaggaaggaattgcaatgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

236

Amino Acids

25.9

Weight (kDa)

5.35

Isoelectric Point (pI)

53.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000545)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36571
pyrus_communis pycom02g01560 pycom08g10820 pycom09g05820 pycom13g21850 pycom14g16010
rosa_chinensis RchiOBHm_Chr2g0094861 RchiOBHm_Chr2g0124911 RchiOBHm_Chr2g0138581 RchiOBHm_Chr2g0160851 RchiOBHm_Chr4g0407411
rosa_laevigata RLG00000001652 RLG00000001872 RLG00000002037 RLG00000003076 RLG00000006419 RLG00000016771 RLG00000017383 RLG00000022851 RLG00000030563 RLG00000033869 RLG00000034176
rosa_multiflora Rmu_co8013424.1_g000001 Rmu_co8016716.1_g000001 Rmu_co8183472.1_g000001 Rmu_co8254047.1_g000001 Rmu_co8354891.1_g000001 Rmu_sc0000124.1_g000003 Rmu_sc0002132.1_g000027 Rmu_sc0003007.1_g000011 Rmu_sc0003221.1_g000096 Rmu_sc0003221.1_g000097 Rmu_sc0005119.1_g000004 Rmu_sc0008057.1_g000005 Rmu_sc0034532.1_g000001 Rmu_sc0036406.1_g000001 Rmu_ssc0000008.1_g000009
rosa_roxburghii Rroxscaffold_1G00030520 Rroxscaffold_2G00107360 Rroxscaffold_2G00153420 Rroxscaffold_5G00335750 Rroxscaffold_5G00351760 Rroxscaffold_5G00352080 Rroxscaffold_6G00419090
rosa_rugosa Rorug01G0341800 Rorug01G0341900 Rorug02G0180200 Rorug02G0180300 Rorug03G0186100 Rorug03G0186200 Rorug03G0284800 Rorug04G0104500 Rorug05G0246300 Rorug06G0108400 Rorug06G0471500 Rorug06G0510400
rosa_samantha Rh1AG159000 Rh1CG148200 Rh1CG189900 Rh2AG552800 Rh2BG473900 Rh2BG612100 Rh2BG612300 Rh2DG094500 Rh2DG482600 Rh3BG234000 Rh3CG320000 Rh4AG144200 Rh4BG127900 Rh4DG097300 Rh5AG128900 Rh5AG381200 Rh5BG363000 Rh5DG491900 Rh6AG048400 Rh6BG168100 Rh6CG005800 Rh6DG006000 Rh7AG255100 Rh7BG360600 Rh7CG271700 Rh7CG482300 Rh7DG451200
rosa_wichuraiana Rw4G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 2 cut(s) 376, 512
AciI CCGC 5 cut(s) 5, 206, 266, 347, 400
AclWI GGATC 2 cut(s) 523, 638
AcuI CTGAAG 2 cut(s) 39, 59
AdeI CACNNNGTG 1 cut(s) 676
AfaI GTAC 1 cut(s) 561
AfiI CCNNNNNNNGG 3 cut(s) 150, 318, 519
AjiI CACGTC 1 cut(s) 31
AluBI AGCT 3 cut(s) 163, 284, 316
AluI AGCT 3 cut(s) 163, 284, 316
Alw21I GWGCWC 1 cut(s) 370
Alw26I GTCTC 2 cut(s) 116, 345
AlwI GGATC 2 cut(s) 523, 638
Aor13HI TCCGGA 2 cut(s) 376, 512
AoxI GGCC 3 cut(s) 321, 487, 663
ApeKI GCWGC 5 cut(s) 125, 275, 278, 281, 458
AspLEI GCGC 2 cut(s) 399, 469
AspS9I GGNCC 4 cut(s) 321, 487, 586, 591
AsuHPI GGTGA 2 cut(s) 398, 688
AvaII GGWCC 2 cut(s) 586, 591
BbsI GAAGAC 2 cut(s) 561, 639
Bbv12I GWGCWC 1 cut(s) 370
BbvI GCAGC 5 cut(s) 112, 262, 290, 293, 445
BccI CCATC 4 cut(s) 341, 358, 498, 630
BceAI ACGGC 2 cut(s) 387, 562
BcoDI GTCTC 2 cut(s) 116, 345
BfaI CTAG 1 cut(s) 494
BfmI CTRYAG 1 cut(s) 276
BfoI RGCGCY 2 cut(s) 400, 470
BisI GCNGC 6 cut(s) 126, 276, 279, 282, 400, 459
BlsI GCNGC 6 cut(s) 127, 277, 280, 283, 401, 460
Bme18I GGWCC 2 cut(s) 586, 591
BmgBI CACGTC 1 cut(s) 31
BmgT120I GGNCC 4 cut(s) 321, 487, 586, 591
BmiI GGNNCC 1 cut(s) 541
BmrI ACTGGG 1 cut(s) 544
BmsI GCATC 1 cut(s) 382
BmuI ACTGGG 1 cut(s) 544
BpiI GAAGAC 2 cut(s) 561, 639
BpuEI CTTGAG 1 cut(s) 104
BsaBI GATNNNNATC 1 cut(s) 642
BsaI GGTCTC 1 cut(s) 116
BsaJI CCNNGG 2 cut(s) 453, 544
BsaWI WCCGGW 3 cut(s) 376, 512, 588
BsaXI ACNNNNNCTCC 2 cut(s) 409, 439
Bsc4I CCNNNNNNNGG 3 cut(s) 150, 318, 519
Bse118I RCCGGY 1 cut(s) 661
Bse1I ACTGG 2 cut(s) 197, 539
Bse3DI GCAATG 1 cut(s) 711
Bse8I GATNNNNATC 1 cut(s) 642
BseAI TCCGGA 2 cut(s) 376, 512
BseDI CCNNGG 2 cut(s) 453, 544
BseGI GGATG 1 cut(s) 373
BseJI GATNNNNATC 1 cut(s) 642
BseLI CCNNNNNNNGG 3 cut(s) 150, 318, 519
BseMI GCAATG 1 cut(s) 711
BseMII CTCAG 1 cut(s) 127
BseNI ACTGG 2 cut(s) 197, 539
BseRI GAGGAG 2 cut(s) 89, 379
BseXI GCAGC 5 cut(s) 112, 262, 290, 293, 445
BsgI GTGCAG 1 cut(s) 642
BshFI GGCC 3 cut(s) 323, 489, 665
BsiHKAI GWGCWC 1 cut(s) 370
BsiSI CCGG 5 cut(s) 377, 464, 513, 589, 662
BsiWI CGTACG 1 cut(s) 559
BslI CCNNNNNNNGG 3 cut(s) 150, 318, 519
BsmAI GTCTC 2 cut(s) 116, 345
BsnI GGCC 3 cut(s) 323, 489, 665
Bso31I GGTCTC 1 cut(s) 116
Bsp1286I GDGCHC 1 cut(s) 370
Bsp13I TCCGGA 2 cut(s) 376, 512
Bsp143I GATC 2 cut(s) 515, 643
Bsp19I CCATGG 1 cut(s) 453
BspACI CCGC 5 cut(s) 5, 206, 266, 347, 400
BspANI GGCC 3 cut(s) 323, 489, 665
BspCNI CTCAG 1 cut(s) 126
BspEI TCCGGA 2 cut(s) 376, 512
BspLI GGNNCC 1 cut(s) 541
BspMAI CTGCAG 1 cut(s) 280
BspPI GGATC 2 cut(s) 523, 638
BspTNI GGTCTC 1 cut(s) 116
BsrDI GCAATG 1 cut(s) 711
BsrFI RCCGGY 1 cut(s) 661
BsrI ACTGG 2 cut(s) 197, 539
BssAI RCCGGY 1 cut(s) 661
BssECI CCNNGG 2 cut(s) 453, 544
BssMI GATC 2 cut(s) 515, 643
BssT1I CCWWGG 1 cut(s) 453
Bst4CI ACNGT 2 cut(s) 49, 564
Bst6I CTCTTC 1 cut(s) 622
BstDEI CTNAG 1 cut(s) 113
BstDSI CCRYGG 2 cut(s) 453, 544
BstF5I GGATG 1 cut(s) 373
BstH2I RGCGCY 2 cut(s) 400, 470
BstHHI GCGC 2 cut(s) 399, 469
BstKTI GATC 2 cut(s) 518, 646
BstMAI GTCTC 2 cut(s) 116, 345
BstMBI GATC 2 cut(s) 515, 643
BstSFI CTRYAG 1 cut(s) 276
BstV1I GCAGC 5 cut(s) 112, 262, 290, 293, 445
BstV2I GAAGAC 2 cut(s) 561, 639
BstX2I RGATCY 1 cut(s) 515
BstYI RGATCY 1 cut(s) 515
BsuRI GGCC 3 cut(s) 323, 489, 665
BtgI CCRYGG 2 cut(s) 453, 544
BtrI CACGTC 1 cut(s) 31
BtsCI GGATG 1 cut(s) 373
BtsI GCAGTG 2 cut(s) 124, 368
BtsIMutI CAGTG 2 cut(s) 124, 368
CfoI GCGC 2 cut(s) 399, 469
Cfr10I RCCGGY 1 cut(s) 661
Cfr13I GGNCC 4 cut(s) 321, 487, 586, 591
Csp6I GTAC 1 cut(s) 560
CviAII CATG 2 cut(s) 289, 454
CviQI GTAC 1 cut(s) 560
DdeI CTNAG 1 cut(s) 113
DpnI GATC 2 cut(s) 517, 645
DpnII GATC 2 cut(s) 515, 643
DraIII CACNNNGTG 1 cut(s) 676
Eam1104I CTCTTC 1 cut(s) 622
EarI CTCTTC 1 cut(s) 622
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 453
Eco31I GGTCTC 1 cut(s) 116
Eco47I GGWCC 2 cut(s) 586, 591
Eco57I CTGAAG 2 cut(s) 39, 59
EcoT14I CCWWGG 1 cut(s) 453
ErhI CCWWGG 1 cut(s) 453
FaeI CATG 2 cut(s) 292, 457
FaiI YATR 6 cut(s) 65, 92, 156, 290, 417, 455
FalI AAGNNNNNCTT 2 cut(s) 300, 332
FatI CATG 2 cut(s) 288, 453
FauI CCCGC 1 cut(s) 259
Fnu4HI GCNGC 6 cut(s) 126, 276, 279, 282, 400, 459
FokI GGATG 1 cut(s) 360
Fsp4HI GCNGC 6 cut(s) 126, 276, 279, 282, 400, 459
FspBI CTAG 1 cut(s) 494
GlaI GCGC 2 cut(s) 398, 468
GluI GCNGC 6 cut(s) 126, 276, 279, 282, 400, 459
HaeII RGCGCY 2 cut(s) 400, 470
HaeIII GGCC 3 cut(s) 323, 489, 665
HapII CCGG 5 cut(s) 377, 464, 513, 589, 662
HhaI GCGC 2 cut(s) 399, 469
Hin1II CATG 2 cut(s) 292, 457
Hin6I GCGC 2 cut(s) 397, 467
HinP1I GCGC 2 cut(s) 397, 467
HindIII AAGCTT 2 cut(s) 161, 314
HinfI GANTC 3 cut(s) 380, 434, 481
HpaII CCGG 5 cut(s) 377, 464, 513, 589, 662
HphI GGTGA 2 cut(s) 398, 688
Hpy166II GTNNAC 1 cut(s) 679
Hpy188I TCNGA 4 cut(s) 355, 394, 480, 648
Hpy188III TCNNGA 3 cut(s) 377, 513, 626
Hpy8I GTNNAC 1 cut(s) 679
Hpy99I CGWCG 1 cut(s) 554
HpyAV CCTTC 4 cut(s) 34, 101, 485, 689
HpyCH4III ACNGT 2 cut(s) 49, 564
HpyCH4IV ACGT 2 cut(s) 30, 558
HpyCH4V TGCA 4 cut(s) 278, 373, 659, 704
HpyF3I CTNAG 1 cut(s) 113
HpySE526I ACGT 2 cut(s) 30, 558
Hsp92II CATG 2 cut(s) 292, 457
HspAI GCGC 2 cut(s) 397, 467
Kpn2I TCCGGA 2 cut(s) 376, 512
Kzo9I GATC 2 cut(s) 515, 643
LmnI GCTCC 4 cut(s) 307, 365, 466, 474
Lsp1109I GCAGC 5 cut(s) 112, 262, 290, 293, 445
LweI GCATC 1 cut(s) 382
MaeI CTAG 1 cut(s) 494
MaeII ACGT 2 cut(s) 30, 558
MaeIII GTNAC 1 cut(s) 404
MalI GATC 2 cut(s) 517, 645
MboI GATC 2 cut(s) 515, 643
MboII GAAGA 4 cut(s) 370, 566, 609, 644
MflI RGATCY 1 cut(s) 515
MhlI GDGCHC 1 cut(s) 370
MluCI AATT 1 cut(s) 699
MlyI GAGTC 1 cut(s) 428
MmeI TCCRAC 1 cut(s) 671
MroI TCCGGA 2 cut(s) 376, 512
MseI TTAA 1 cut(s) 531
MspI CCGG 5 cut(s) 377, 464, 513, 589, 662
NcoI CCATGG 1 cut(s) 453
NdeII GATC 2 cut(s) 515, 643
NlaIII CATG 2 cut(s) 292, 457
NlaIV GGNNCC 1 cut(s) 541
NmuCI GTSAC 1 cut(s) 404
PfeI GAWTC 2 cut(s) 380, 481
Pfl23II CGTACG 1 cut(s) 559
PkrI GCNGC 6 cut(s) 127, 277, 280, 283, 401, 460
PleI GAGTC 1 cut(s) 428
PpsI GAGTC 1 cut(s) 428
PspLI CGTACG 1 cut(s) 559
PspN4I GGNNCC 1 cut(s) 541
PspPI GGNCC 4 cut(s) 321, 487, 586, 591
PstI CTGCAG 1 cut(s) 280
PsuI RGATCY 1 cut(s) 515
RsaI GTAC 1 cut(s) 561
RsaNI GTAC 1 cut(s) 560
SaqAI TTAA 1 cut(s) 531
SatI GCNGC 6 cut(s) 126, 276, 279, 282, 400, 459
Sau3AI GATC 2 cut(s) 515, 643
Sau96I GGNCC 4 cut(s) 321, 487, 586, 591
SchI GAGTC 1 cut(s) 428
SduI GDGCHC 1 cut(s) 370
SfaNI GCATC 1 cut(s) 382
SfcI CTRYAG 1 cut(s) 276
SinI GGWCC 2 cut(s) 586, 591
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
Sse9I AATT 1 cut(s) 699
SsiI CCGC 5 cut(s) 5, 206, 266, 347, 400
SspMI CTAG 1 cut(s) 494
StyI CCWWGG 1 cut(s) 453
TaaI ACNGT 2 cut(s) 49, 564
TaiI ACGT 2 cut(s) 33, 561
TaqI TCGA 1 cut(s) 383
TasI AATT 1 cut(s) 699
TauI GCSGC 1 cut(s) 402
TfiI GAWTC 2 cut(s) 380, 481
Tru1I TTAA 1 cut(s) 531
Tru9I TTAA 1 cut(s) 531
TscAI CASTG 2 cut(s) 124, 375
TseFI GTSAC 1 cut(s) 404
TseI GCWGC 5 cut(s) 125, 275, 278, 281, 458
Tsp45I GTSAC 1 cut(s) 404
TspDTI ATGAA 3 cut(s) 147, 183, 238
TspRI CASTG 2 cut(s) 124, 375
VpaK11BI GGWCC 2 cut(s) 586, 591
XspI CTAG 1 cut(s) 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.