Rorug03G0186200

ATPase 11, plasma

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000545
Physical Location & Seq
Forward (+)
16142152 .. 16143685
1534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0186200.1

Sequence Viewer

Length: 660 bp
ATGGTGGGGCCCAACCGAGACATATATCCCGTAGCCCGACATACAACCTACCCTGTGGTAGTTGGAAGCGGCCAAGACCTCACCGGGAAGCAACATTTTCGGCCTTGCCAATATGCCTCCATAATATGTATTTCTAGACTAGAATGGGACTTCTTGTCCAACATTGAAGAAAATGTAAAATGGTACTTGGACAATGCCTTGGATTGTGTGATGAAAGGGTTGAGGAGGAAGTTGTTGTTTGCTTGGGATCAAGTGGAGTGTACTGATTCAGGGTTCAAAACCTTGGAGAACCAAAAGAAGCCCATCTTTCTGAAAGAGTTGAAGAAAATATGGGAAAACAAGGGTTTCAAAGCCTCACTTCCATCTTCCATGGGGAAATACTCTTCATTGAACACCTTGTTAATTGATGATAAGGCTTACAAGGCTCTACTAAATCCTGCTCACACAGCCATCTTTCCTCCTGAATACAAGATTGACCAAGTTGATGACAAGGCTTTAGGTCTTAATGGTGAGTTGAGGCTTTACTTGGAGGGACTTGCAGATGCCGATGATGTTACTTCTTATGTTAAAGATCATCCATTTGGACAGCCAGCAATAACAACTACTCACTCTGATTGGGATTTCTATTCAAAGATCCTTACTCATTTCCAGAAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

219

Amino Acids

25.05

Weight (kDa)

6.31

Isoelectric Point (pI)

28.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000545)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36571
pyrus_communis pycom02g01560 pycom08g10820 pycom09g05820 pycom13g21850 pycom14g16010
rosa_chinensis RchiOBHm_Chr2g0094861 RchiOBHm_Chr2g0124911 RchiOBHm_Chr2g0138581 RchiOBHm_Chr2g0160851 RchiOBHm_Chr4g0407411
rosa_laevigata RLG00000001652 RLG00000001872 RLG00000002037 RLG00000003076 RLG00000006419 RLG00000016771 RLG00000017383 RLG00000022851 RLG00000030563 RLG00000033869 RLG00000034176
rosa_multiflora Rmu_co8013424.1_g000001 Rmu_co8016716.1_g000001 Rmu_co8183472.1_g000001 Rmu_co8254047.1_g000001 Rmu_co8354891.1_g000001 Rmu_sc0000124.1_g000003 Rmu_sc0002132.1_g000027 Rmu_sc0003007.1_g000011 Rmu_sc0003221.1_g000096 Rmu_sc0003221.1_g000097 Rmu_sc0005119.1_g000004 Rmu_sc0008057.1_g000005 Rmu_sc0034532.1_g000001 Rmu_sc0036406.1_g000001 Rmu_ssc0000008.1_g000009
rosa_roxburghii Rroxscaffold_1G00030520 Rroxscaffold_2G00107360 Rroxscaffold_2G00153420 Rroxscaffold_5G00335750 Rroxscaffold_5G00351760 Rroxscaffold_5G00352080 Rroxscaffold_6G00419090
rosa_rugosa Rorug01G0341800 Rorug01G0341900 Rorug02G0180200 Rorug02G0180300 Rorug03G0186100 Rorug03G0186200 Rorug03G0284800 Rorug04G0104500 Rorug05G0246300 Rorug06G0108400 Rorug06G0471500 Rorug06G0510400
rosa_samantha Rh1AG159000 Rh1CG148200 Rh1CG189900 Rh2AG552800 Rh2BG473900 Rh2BG612100 Rh2BG612300 Rh2DG094500 Rh2DG482600 Rh3BG234000 Rh3CG320000 Rh4AG144200 Rh4BG127900 Rh4DG097300 Rh5AG128900 Rh5AG381200 Rh5BG363000 Rh5DG491900 Rh6AG048400 Rh6BG168100 Rh6CG005800 Rh6DG006000 Rh7AG255100 Rh7BG360600 Rh7CG271700 Rh7CG482300 Rh7DG451200
rosa_wichuraiana Rw4G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 69
AclWI GGATC 2 cut(s) 255, 628
AcoI YGGCCR 1 cut(s) 70
AfaI GTAC 2 cut(s) 185, 262
AgsI TTSAA 6 cut(s) 167, 277, 322, 349, 391, 630
AhdI GACNNNNNGTC 1 cut(s) 154
Alw26I GTCTC 1 cut(s) 12
AlwI GGATC 2 cut(s) 255, 628
AoxI GGCC 3 cut(s) 8, 70, 101
ApaI GGGCCC 1 cut(s) 12
AspS9I GGNCC 2 cut(s) 8, 9
AsuC2I CCSGG 1 cut(s) 85
AsuHPI GGTGA 2 cut(s) 73, 521
BaeGI GKGCMC 1 cut(s) 12
BanII GRGCYC 1 cut(s) 12
BccI CCATC 3 cut(s) 311, 370, 458
BcgI CGANNNNNNTGC 2 cut(s) 80, 114
BcnI CCSGG 1 cut(s) 85
BcoDI GTCTC 1 cut(s) 12
BfaI CTAG 2 cut(s) 135, 140
BisI GCNGC 1 cut(s) 70
BlsI GCNGC 1 cut(s) 71
Bme1390I CCNGG 1 cut(s) 85
BmeRI GACNNNNNGTC 1 cut(s) 154
BmgT120I GGNCC 2 cut(s) 8, 9
BmiI GGNNCC 2 cut(s) 9, 10
BmrFI CCNGG 1 cut(s) 85
BmsI GCATC 1 cut(s) 532
BpuMI CCSGG 1 cut(s) 85
BsaJI CCNNGG 3 cut(s) 198, 282, 369
BseDI CCNNGG 3 cut(s) 198, 282, 369
BseGI GGATG 1 cut(s) 574
BseRI GAGGAG 1 cut(s) 238
BseSI GKGCMC 1 cut(s) 12
BshFI GGCC 3 cut(s) 10, 72, 103
BsiSI CCGG 1 cut(s) 84
BslFI GGGAC 2 cut(s) 161, 546
BsmAI GTCTC 1 cut(s) 12
BsmFI GGGAC 2 cut(s) 161, 546
BsnI GGCC 3 cut(s) 10, 72, 103
Bsp120I GGGCCC 1 cut(s) 8
Bsp1286I GDGCHC 1 cut(s) 12
Bsp143I GATC 3 cut(s) 247, 571, 633
Bsp19I CCATGG 1 cut(s) 369
BspACI CCGC 1 cut(s) 69
BspANI GGCC 3 cut(s) 10, 72, 103
BspLI GGNNCC 2 cut(s) 9, 10
BspPI GGATC 2 cut(s) 255, 628
BssECI CCNNGG 3 cut(s) 198, 282, 369
BssMI GATC 3 cut(s) 247, 571, 633
BssT1I CCWWGG 3 cut(s) 198, 282, 369
Bst6I CTCTTC 1 cut(s) 388
BstC8I GCNNGC 1 cut(s) 591
BstDSI CCRYGG 1 cut(s) 369
BstF5I GGATG 1 cut(s) 574
BstKTI GATC 3 cut(s) 250, 574, 636
BstMAI GTCTC 1 cut(s) 12
BstMBI GATC 3 cut(s) 247, 571, 633
BstMWI GCNNNNNNNGC 2 cut(s) 422, 446
BstSCI CCNGG 1 cut(s) 83
BstSLI GKGCMC 1 cut(s) 12
BstX2I RGATCY 1 cut(s) 633
BstYI RGATCY 1 cut(s) 633
BsuRI GGCC 3 cut(s) 10, 72, 103
BtgI CCRYGG 1 cut(s) 369
BtsCI GGATG 1 cut(s) 574
Cac8I GCNNGC 1 cut(s) 591
Cfr13I GGNCC 2 cut(s) 8, 9
Csp6I GTAC 2 cut(s) 184, 261
CviAII CATG 1 cut(s) 370
CviQI GTAC 2 cut(s) 184, 261
DpnI GATC 3 cut(s) 249, 573, 635
DpnII GATC 3 cut(s) 247, 571, 633
DriI GACNNNNNGTC 1 cut(s) 154
EaeI YGGCCR 1 cut(s) 70
Eam1104I CTCTTC 1 cut(s) 388
Eam1105I GACNNNNNGTC 1 cut(s) 154
EarI CTCTTC 1 cut(s) 388
Eco130I CCWWGG 3 cut(s) 198, 282, 369
Eco24I GRGCYC 1 cut(s) 12
EcoO109I RGGNCCY 1 cut(s) 8
EcoT14I CCWWGG 3 cut(s) 198, 282, 369
EcoT38I GRGCYC 1 cut(s) 12
ErhI CCWWGG 3 cut(s) 198, 282, 369
FaeI CATG 1 cut(s) 373
FaiI YATR 9 cut(s) 23, 25, 42, 114, 122, 127, 331, 371, 564
FalI AAGNNNNNCTT 4 cut(s) 290, 322, 342, 374
FaqI GGGAC 2 cut(s) 161, 546
FatI CATG 1 cut(s) 369
Fnu4HI GCNGC 1 cut(s) 70
FokI GGATG 1 cut(s) 561
FriOI GRGCYC 1 cut(s) 12
Fsp4HI GCNGC 1 cut(s) 70
FspBI CTAG 2 cut(s) 135, 140
GluI GCNGC 1 cut(s) 70
HaeIII GGCC 3 cut(s) 10, 72, 103
HapII CCGG 1 cut(s) 84
Hin1II CATG 1 cut(s) 373
HinfI GANTC 1 cut(s) 266
HpaII CCGG 1 cut(s) 84
HphI GGTGA 2 cut(s) 73, 521
Hpy166II GTNNAC 1 cut(s) 261
Hpy188I TCNGA 2 cut(s) 312, 613
Hpy188III TCNNGA 3 cut(s) 135, 461, 649
Hpy8I GTNNAC 1 cut(s) 261
HpyCH4V TGCA 1 cut(s) 539
HpyF10VI GCNNNNNNNGC 2 cut(s) 422, 446
Hsp92II CATG 1 cut(s) 373
Kzo9I GATC 3 cut(s) 247, 571, 633
LpnPI CCDG 6 cut(s) 66, 97, 255, 450, 474, 603
LweI GCATC 1 cut(s) 532
MaeI CTAG 2 cut(s) 135, 140
MaeIII GTNAC 1 cut(s) 553
MalI GATC 3 cut(s) 249, 573, 635
MboI GATC 3 cut(s) 247, 571, 633
MboII GAAGA 4 cut(s) 179, 334, 357, 375
MflI RGATCY 1 cut(s) 633
MhlI GDGCHC 1 cut(s) 12
MluCI AATT 1 cut(s) 402
MmeI TCCRAC 2 cut(s) 43, 183
MnlI CCTC 8 cut(s) 89, 127, 216, 219, 364, 468, 510, 523
MseI TTAA 4 cut(s) 401, 504, 567, 658
MspI CCGG 1 cut(s) 84
MspR9I CCNGG 1 cut(s) 85
MwoI GCNNNNNNNGC 2 cut(s) 422, 446
NciI CCSGG 1 cut(s) 85
NcoI CCATGG 1 cut(s) 369
NdeII GATC 3 cut(s) 247, 571, 633
NlaIII CATG 1 cut(s) 373
NlaIV GGNNCC 2 cut(s) 9, 10
PfeI GAWTC 1 cut(s) 266
PkrI GCNGC 1 cut(s) 71
PspN4I GGNNCC 2 cut(s) 9, 10
PspOMI GGGCCC 1 cut(s) 8
PspPI GGNCC 2 cut(s) 8, 9
PsuI RGATCY 1 cut(s) 633
RsaI GTAC 2 cut(s) 185, 262
RsaNI GTAC 2 cut(s) 184, 261
SaqAI TTAA 4 cut(s) 401, 504, 567, 658
SatI GCNGC 1 cut(s) 70
Sau3AI GATC 3 cut(s) 247, 571, 633
Sau96I GGNCC 2 cut(s) 8, 9
ScrFI CCNGG 1 cut(s) 85
SduI GDGCHC 1 cut(s) 12
SetI ASST 5 cut(s) 50, 81, 284, 398, 502
SfaNI GCATC 1 cut(s) 532
Sse9I AATT 1 cut(s) 402
SsiI CCGC 1 cut(s) 69
SspMI CTAG 2 cut(s) 135, 140
StyD4I CCNGG 1 cut(s) 83
StyI CCWWGG 3 cut(s) 198, 282, 369
TasI AATT 1 cut(s) 402
TatI WGTACW 1 cut(s) 260
TauI GCSGC 1 cut(s) 72
TfiI GAWTC 1 cut(s) 266
Tru1I TTAA 4 cut(s) 401, 504, 567, 658
Tru9I TTAA 4 cut(s) 401, 504, 567, 658
TspDTI ATGAA 2 cut(s) 227, 375
XbaI TCTAGA 1 cut(s) 134
XspI CTAG 2 cut(s) 135, 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.