Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005119.1

Orthogroup ID

OG0000545

Physical Location & Seq

Genomic Coordinates Forward (+)

23148 .. 29822

Gene Structure 6675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005119.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

atggatgaaaagacgattttgtccctgcttcatctctgttgcccgacacctgtctaccgtctaaactcccgtgtgtttcttctcgacacctggtctgctgttcagtcctatcgtgtcttcgctatttcgctgcacagagaggtgcagcctggcgttgactcgtcggaggatggcgaagaagatggtggctacgcacccaacctcctcttccatctccgaacggcactgaaccgtcctcttcttccttctccgcctccgactagaactcgtctaagaacgaagaggagagagaggtcgggtgcgagggggccgggcttgcagttccagagaatagggaccgggctaaacccggaccgggacaagcgggctgcggaggaggacgaagagaacgagcacgatgacggcgccggagttgaacttgaagagcgagaggggaagcctcctgactggcaagattttgtgtttattattactctgctggtcatcaactccaccattagtttcatcaaggaaaataatgcgggtaatgctgcagcagctctcatggttcgtcttgctcctaaagccaaggtatcagatataccaatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006970 GO:0008150 GO:0008324 GO:0008553 GO:0009628 GO:0009651 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0015672 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0034220 GO:0036442 GO:0042623 GO:0042625 GO:0042626 GO:0043492 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

196

Amino Acids

21.9

Weight (kDa)

5.64

Isoelectric Point (pI)

42.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000545)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g36571
pyrus_communis	pycom02g01560 pycom08g10820 pycom09g05820 pycom13g21850 pycom14g16010
rosa_chinensis	RchiOBHm_Chr2g0094861 RchiOBHm_Chr2g0124911 RchiOBHm_Chr2g0138581 RchiOBHm_Chr2g0160851 RchiOBHm_Chr4g0407411
rosa_laevigata	RLG00000001652 RLG00000001872 RLG00000002037 RLG00000003076 RLG00000006419 RLG00000016771 RLG00000017383 RLG00000022851 RLG00000030563 RLG00000033869 RLG00000034176
rosa_multiflora	Rmu_co8013424.1_g000001 Rmu_co8016716.1_g000001 Rmu_co8183472.1_g000001 Rmu_co8254047.1_g000001 Rmu_co8354891.1_g000001 Rmu_sc0000124.1_g000003 Rmu_sc0002132.1_g000027 Rmu_sc0003007.1_g000011 Rmu_sc0003221.1_g000096 Rmu_sc0003221.1_g000097 Rmu_sc0005119.1_g000004 Rmu_sc0008057.1_g000005 Rmu_sc0034532.1_g000001 Rmu_sc0036406.1_g000001 Rmu_ssc0000008.1_g000009
rosa_roxburghii	Rroxscaffold_1G00030520 Rroxscaffold_2G00107360 Rroxscaffold_2G00153420 Rroxscaffold_5G00335750 Rroxscaffold_5G00351760 Rroxscaffold_5G00352080 Rroxscaffold_6G00419090
rosa_rugosa	Rorug01G0341800 Rorug01G0341900 Rorug02G0180200 Rorug02G0180300 Rorug03G0186100 Rorug03G0186200 Rorug03G0284800 Rorug04G0104500 Rorug05G0246300 Rorug06G0108400 Rorug06G0471500 Rorug06G0510400
rosa_samantha	Rh1AG159000 Rh1CG148200 Rh1CG189900 Rh2AG552800 Rh2BG473900 Rh2BG612100 Rh2BG612300 Rh2DG094500 Rh2DG482600 Rh3BG234000 Rh3CG320000 Rh4AG144200 Rh4BG127900 Rh4DG097300 Rh5AG128900 Rh5AG381200 Rh5BG363000 Rh5DG491900 Rh6AG048400 Rh6BG168100 Rh6CG005800 Rh6DG006000 Rh7AG255100 Rh7BG360600 Rh7CG271700 Rh7CG482300 Rh7DG451200
rosa_wichuraiana	Rw4G004970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	19
AccB1I	GGYRCC	1 cut(s)	404
AccI	GTMKAC	1 cut(s)	54
AciI	CCGC	4 cut(s)	251, 364, 371, 521
AcyI	GRCGYC	1 cut(s)	405
AfiI	CCNNNNNNNGG	1 cut(s)	355
AgsI	TTSAA	2 cut(s)	416, 422
AhdI	GACNNNNNGTC	1 cut(s)	91
AjnI	CCWGG	2 cut(s)	89, 148
AjuI	GAANNNNNNNTTGG	2 cut(s)	191, 223
AluBI	AGCT	1 cut(s)	539
AluI	AGCT	1 cut(s)	539
Alw21I	GWGCWC	1 cut(s)	396
AoxI	GGCC	1 cut(s)	308
ApeKI	GCWGC	6 cut(s)	130, 145, 368, 530, 533, 536
AspLEI	GCGC	1 cut(s)	407
AspS9I	GGNCC	3 cut(s)	308, 336, 352
AsuC2I	CCSGG	4 cut(s)	312, 340, 350, 356
AvaII	GGWCC	2 cut(s)	336, 352
BanI	GGYRCC	1 cut(s)	404
BbsI	GAAGAC	1 cut(s)	109
Bbv12I	GWGCWC	1 cut(s)	396
BbvI	GCAGC	6 cut(s)	117, 157, 355, 517, 545, 548
BccI	CCATC	3 cut(s)	164, 176, 219
BceAI	ACGGC	2 cut(s)	237, 418
BciT130I	CCWGG	2 cut(s)	91, 150
BcnI	CCSGG	4 cut(s)	312, 340, 350, 356
BfaI	CTAG	1 cut(s)	261
BfmI	CTRYAG	1 cut(s)	531
BfoI	RGCGCY	1 cut(s)	408
BisI	GCNGC	6 cut(s)	131, 146, 369, 531, 534, 537
BlsI	GCNGC	6 cut(s)	132, 147, 370, 532, 535, 538
Bme1390I	CCNGG	6 cut(s)	91, 150, 312, 340, 350, 356
Bme18I	GGWCC	2 cut(s)	336, 352
BmeRI	GACNNNNNGTC	1 cut(s)	91
BmgT120I	GGNCC	3 cut(s)	308, 336, 352
BmiI	GGNNCC	3 cut(s)	309, 337, 406
BmrFI	CCNGG	6 cut(s)	91, 150, 312, 340, 350, 356
BoxI	GACNNNNGTC	1 cut(s)	50
BpiI	GAAGAC	1 cut(s)	109
BpuMI	CCSGG	4 cut(s)	312, 340, 350, 356
BsaHI	GRCGYC	1 cut(s)	405
BsaJI	CCNNGG	1 cut(s)	567
BsaXI	ACNNNNNCTCC	2 cut(s)	186, 216
Bsc4I	CCNNNNNNNGG	1 cut(s)	355
Bse1I	ACTGG	1 cut(s)	452
BseBI	CCWGG	2 cut(s)	91, 150
BseDI	CCNNGG	1 cut(s)	567
BseGI	GGATG	2 cut(s)	10, 175
BseLI	CCNNNNNNNGG	1 cut(s)	355
BseNI	ACTGG	1 cut(s)	452
BseRI	GAGGAG	3 cut(s)	194, 298, 389
BseXI	GCAGC	6 cut(s)	117, 157, 355, 517, 545, 548
BsgI	GTGCAG	2 cut(s)	116, 164
BshFI	GGCC	1 cut(s)	310
BshNI	GGYRCC	1 cut(s)	404
BsiHKAI	GWGCWC	1 cut(s)	396
BsiSI	CCGG	5 cut(s)	311, 339, 350, 355, 408
BslFI	GGGAC	3 cut(s)	7, 349, 371
BslI	CCNNNNNNNGG	1 cut(s)	355
BsmFI	GGGAC	3 cut(s)	7, 349, 371
BsnI	GGCC	1 cut(s)	310
Bsp1286I	GDGCHC	1 cut(s)	396
BspACI	CCGC	4 cut(s)	251, 364, 371, 521
BspANI	GGCC	1 cut(s)	310
BspLI	GGNNCC	3 cut(s)	309, 337, 406
BspMAI	CTGCAG	1 cut(s)	535
BspQI	GCTCTTC	1 cut(s)	417
BspT107I	GGYRCC	1 cut(s)	404
BsrI	ACTGG	1 cut(s)	452
BssECI	CCNNGG	1 cut(s)	567
BssNI	GRCGYC	1 cut(s)	405
BssT1I	CCWWGG	1 cut(s)	567
Bst2UI	CCWGG	2 cut(s)	91, 150
Bst4CI	ACNGT	2 cut(s)	59, 233
Bst6I	CTCTTC	5 cut(s)	212, 243, 275, 378, 417
BstACI	GRCGYC	1 cut(s)	405
BstC8I	GCNNGC	2 cut(s)	317, 366
BstDEI	CTNAG	1 cut(s)	272
BstF5I	GGATG	2 cut(s)	10, 175
BstH2I	RGCGCY	1 cut(s)	408
BstHHI	GCGC	1 cut(s)	407
BstMWI	GCNNNNNNNGC	4 cut(s)	316, 527, 536, 563
BstNI	CCWGG	2 cut(s)	91, 150
BstPAI	GACNNNNGTC	1 cut(s)	50
BstSCI	CCNGG	6 cut(s)	89, 148, 310, 338, 348, 354
BstSFI	CTRYAG	1 cut(s)	531
BstV1I	GCAGC	6 cut(s)	117, 157, 355, 517, 545, 548
BstV2I	GAAGAC	1 cut(s)	109
BsuRI	GGCC	1 cut(s)	310
BtsCI	GGATG	2 cut(s)	10, 175
BtsIMutI	CAGTG	1 cut(s)	224
Cac8I	GCNNGC	2 cut(s)	317, 366
CfoI	GCGC	1 cut(s)	407
Cfr13I	GGNCC	3 cut(s)	308, 336, 352
CpoI	CGGWCCG	1 cut(s)	352
CsiI	ACCWGGT	1 cut(s)	89
CspI	CGGWCCG	1 cut(s)	352
CviAII	CATG	1 cut(s)	544
CviJI	RGCY	9 cut(s)	148, 189, 310, 315, 343, 368, 439, 539, 566
CviKI_1	RGCY	9 cut(s)	148, 189, 310, 315, 343, 368, 439, 539, 566
DdeI	CTNAG	1 cut(s)	272
DinI	GGCGCC	1 cut(s)	406
DrdI	GACNNNNNNGTC	1 cut(s)	19
DriI	GACNNNNNGTC	1 cut(s)	91
DseDI	GACNNNNNNGTC	1 cut(s)	19
Eam1104I	CTCTTC	5 cut(s)	212, 243, 275, 378, 417
Eam1105I	GACNNNNNGTC	1 cut(s)	91
EarI	CTCTTC	5 cut(s)	212, 243, 275, 378, 417
EciI	GGCGGA	1 cut(s)	240
Eco130I	CCWWGG	1 cut(s)	567
Eco47I	GGWCC	2 cut(s)	336, 352
EcoRII	CCWGG	2 cut(s)	89, 148
EcoT14I	CCWWGG	1 cut(s)	567
EgeI	GGCGCC	1 cut(s)	406
EheI	GGCGCC	1 cut(s)	406
ErhI	CCWWGG	1 cut(s)	567
FaeI	CATG	1 cut(s)	547
FaiI	YATR	2 cut(s)	545, 581
FaqI	GGGAC	3 cut(s)	7, 349, 371
FatI	CATG	1 cut(s)	543
FauI	CCCGC	2 cut(s)	357, 514
FblI	GTMKAC	1 cut(s)	54
Fnu4HI	GCNGC	6 cut(s)	131, 146, 369, 531, 534, 537
FokI	GGATG	2 cut(s)	17, 182
Fsp4HI	GCNGC	6 cut(s)	131, 146, 369, 531, 534, 537
FspBI	CTAG	1 cut(s)	261
GlaI	GCGC	1 cut(s)	406
GluI	GCNGC	6 cut(s)	131, 146, 369, 531, 534, 537
HaeII	RGCGCY	1 cut(s)	408
HaeIII	GGCC	1 cut(s)	310
HapII	CCGG	5 cut(s)	311, 339, 350, 355, 408
HhaI	GCGC	1 cut(s)	407
Hin1I	GRCGYC	1 cut(s)	405
Hin1II	CATG	1 cut(s)	547
Hin6I	GCGC	1 cut(s)	405
HinP1I	GCGC	1 cut(s)	405
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HinfI	GANTC	1 cut(s)	158
HpaII	CCGG	5 cut(s)	311, 339, 350, 355, 408
Hpy166II	GTNNAC	2 cut(s)	55, 157
Hpy188I	TCNGA	4 cut(s)	166, 218, 258, 577
Hpy188III	TCNNGA	3 cut(s)	83, 325, 443
Hpy8I	GTNNAC	2 cut(s)	55, 157
Hpy99I	CGWCG	1 cut(s)	166
HpyAV	CCTTC	1 cut(s)	255
HpyCH4III	ACNGT	2 cut(s)	59, 233
HpyCH4V	TGCA	4 cut(s)	133, 145, 319, 533
HpyF10VI	GCNNNNNNNGC	4 cut(s)	316, 527, 536, 563
HpyF3I	CTNAG	1 cut(s)	272
Hsp92I	GRCGYC	1 cut(s)	405
Hsp92II	CATG	1 cut(s)	547
HspAI	GCGC	1 cut(s)	405
KasI	GGCGCC	1 cut(s)	404
LguI	GCTCTTC	1 cut(s)	417
LmnI	GCTCC	1 cut(s)	562
Lsp1109I	GCAGC	6 cut(s)	117, 157, 355, 517, 545, 548
MabI	ACCWGGT	1 cut(s)	89
MaeI	CTAG	1 cut(s)	261
MhlI	GDGCHC	1 cut(s)	396
MluCI	AATT	1 cut(s)	585
Mly113I	GGCGCC	1 cut(s)	405
MlyI	GAGTC	1 cut(s)	152
MmeI	TCCRAC	2 cut(s)	144, 281
MspI	CCGG	5 cut(s)	311, 339, 350, 355, 408
MspR9I	CCNGG	6 cut(s)	91, 150, 312, 340, 350, 356
MvaI	CCWGG	2 cut(s)	91, 150
MwoI	GCNNNNNNNGC	4 cut(s)	316, 527, 536, 563
NarI	GGCGCC	1 cut(s)	405
NciI	CCSGG	4 cut(s)	312, 340, 350, 356
NlaIII	CATG	1 cut(s)	547
NlaIV	GGNNCC	3 cut(s)	309, 337, 406
PciSI	GCTCTTC	1 cut(s)	417
PcsI	WCGNNNNNNNCGW	1 cut(s)	387
PkrI	GCNGC	6 cut(s)	132, 147, 370, 532, 535, 538
PleI	GAGTC	1 cut(s)	152
PluTI	GGCGCC	1 cut(s)	408
PpsI	GAGTC	1 cut(s)	152
PshAI	GACNNNNGTC	1 cut(s)	50
Psp6I	CCWGG	2 cut(s)	89, 148
PspGI	CCWGG	2 cut(s)	89, 148
PspN4I	GGNNCC	3 cut(s)	309, 337, 406
PspPI	GGNCC	3 cut(s)	308, 336, 352
PstI	CTGCAG	1 cut(s)	535
Rsr2I	CGGWCCG	1 cut(s)	352
RsrII	CGGWCCG	1 cut(s)	352
SapI	GCTCTTC	1 cut(s)	417
SatI	GCNGC	6 cut(s)	131, 146, 369, 531, 534, 537
Sau96I	GGNCC	3 cut(s)	308, 336, 352
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	6 cut(s)	91, 150, 312, 340, 350, 356
SduI	GDGCHC	1 cut(s)	396
SetI	ASST	7 cut(s)	52, 92, 144, 204, 296, 541, 573
SexAI	ACCWGGT	1 cut(s)	89
SfcI	CTRYAG	1 cut(s)	531
SfoI	GGCGCC	1 cut(s)	406
SinI	GGWCC	2 cut(s)	336, 352
Sse9I	AATT	1 cut(s)	585
SsiI	CCGC	4 cut(s)	251, 364, 371, 521
SspDI	GGCGCC	1 cut(s)	404
SspMI	CTAG	1 cut(s)	261
StyD4I	CCNGG	6 cut(s)	89, 148, 310, 338, 348, 354
StyI	CCWWGG	1 cut(s)	567
TaaI	ACNGT	2 cut(s)	59, 233
TaqI	TCGA	1 cut(s)	84
TasI	AATT	1 cut(s)	585
TscAI	CASTG	1 cut(s)	231
TseI	GCWGC	6 cut(s)	130, 145, 368, 530, 533, 536
TspDTI	ATGAA	3 cut(s)	20, 21, 493
TspRI	CASTG	1 cut(s)	231
VpaK11BI	GGWCC	2 cut(s)	336, 352
XmiI	GTMKAC	1 cut(s)	54
XspI	CTAG	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.