Rh4AG144200

Plasma membrane ATPase 1

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Reverse (-)
36465229 .. 36466350
1122 bp
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UTR
Exon/CDS
Intron
Rh4AG144200.1

Sequence Viewer

Length: 351 bp
ATGTTCTCACAATTGTGTGGTATGGGTGTTGTGTTTCAAGAGAGCAAGTTTTTCAAGGGAAGCCTCCTCTGGCAAGATTTTGCAGTTATTATTACTCTGCTGGTCATCAACTCCACCATTAGTTTCATCAAGGAAAATAATGCGGGTAATGCTGCAGCAGCTCTCATGGCTCGTCTTGCTCCTAAAGCCAAGAAATGGTCCGAGATCATTGGGCAAGCACGCCAAAGTGTCAAAGTTCTTAAAGATCAGGAAGTGATTCGAACCGTTCTTAATATATTACAGACAAACTGCCAGCTCTCTTGGAACATTTCTCTTAACCCAGATTTCATTGATCTTTTTCGACATGCTTAA

Protein Analysis

116

Amino Acids

13.01

Weight (kDa)

9.39

Isoelectric Point (pI)

36.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000545)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36571
pyrus_communis pycom02g01560 pycom08g10820 pycom09g05820 pycom13g21850 pycom14g16010
rosa_chinensis RchiOBHm_Chr2g0094861 RchiOBHm_Chr2g0124911 RchiOBHm_Chr2g0138581 RchiOBHm_Chr2g0160851 RchiOBHm_Chr4g0407411
rosa_laevigata RLG00000001652 RLG00000001872 RLG00000002037 RLG00000003076 RLG00000006419 RLG00000016771 RLG00000017383 RLG00000022851 RLG00000030563 RLG00000033869 RLG00000034176
rosa_multiflora Rmu_co8013424.1_g000001 Rmu_co8016716.1_g000001 Rmu_co8183472.1_g000001 Rmu_co8254047.1_g000001 Rmu_co8354891.1_g000001 Rmu_sc0000124.1_g000003 Rmu_sc0002132.1_g000027 Rmu_sc0003007.1_g000011 Rmu_sc0003221.1_g000096 Rmu_sc0003221.1_g000097 Rmu_sc0005119.1_g000004 Rmu_sc0008057.1_g000005 Rmu_sc0034532.1_g000001 Rmu_sc0036406.1_g000001 Rmu_ssc0000008.1_g000009
rosa_roxburghii Rroxscaffold_1G00030520 Rroxscaffold_2G00107360 Rroxscaffold_2G00153420 Rroxscaffold_5G00335750 Rroxscaffold_5G00351760 Rroxscaffold_5G00352080 Rroxscaffold_6G00419090
rosa_rugosa Rorug01G0341800 Rorug01G0341900 Rorug02G0180200 Rorug02G0180300 Rorug03G0186100 Rorug03G0186200 Rorug03G0284800 Rorug04G0104500 Rorug05G0246300 Rorug06G0108400 Rorug06G0471500 Rorug06G0510400
rosa_samantha Rh1AG159000 Rh1CG148200 Rh1CG189900 Rh2AG552800 Rh2BG473900 Rh2BG612100 Rh2BG612300 Rh2DG094500 Rh2DG482600 Rh3BG234000 Rh3CG320000 Rh4AG144200 Rh4BG127900 Rh4DG097300 Rh5AG128900 Rh5AG381200 Rh5BG363000 Rh5DG491900 Rh6AG048400 Rh6BG168100 Rh6CG005800 Rh6DG006000 Rh7AG255100 Rh7BG360600 Rh7CG271700 Rh7CG482300 Rh7DG451200
rosa_wichuraiana Rw4G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 195
AciI CCGC 1 cut(s) 143
AfiI CCNNNNNNNGG 1 cut(s) 195
AgsI TTSAA 2 cut(s) 38, 55
AleI CACNNNNGTG 1 cut(s) 13
AluBI AGCT 2 cut(s) 161, 295
AluI AGCT 2 cut(s) 161, 295
ApeKI GCWGC 3 cut(s) 152, 155, 158
Asp700I GAANNNNTTC 1 cut(s) 255
AspS9I GGNCC 1 cut(s) 198
AsuII TTCGAA 1 cut(s) 259
AvaII GGWCC 1 cut(s) 198
BbvI GCAGC 3 cut(s) 139, 167, 170
BfmI CTRYAG 1 cut(s) 153
BisI GCNGC 3 cut(s) 153, 156, 159
BlsI GCNGC 3 cut(s) 154, 157, 160
Bme18I GGWCC 1 cut(s) 198
BmgT120I GGNCC 1 cut(s) 198
Bpu14I TTCGAA 1 cut(s) 259
Bsc4I CCNNNNNNNGG 1 cut(s) 195
BseLI CCNNNNNNNGG 1 cut(s) 195
BseRI GAGGAG 1 cut(s) 56
BseXI GCAGC 3 cut(s) 139, 167, 170
BslI CCNNNNNNNGG 1 cut(s) 195
Bsp119I TTCGAA 1 cut(s) 259
Bsp143I GATC 3 cut(s) 204, 244, 331
BspACI CCGC 1 cut(s) 143
BspMAI CTGCAG 1 cut(s) 157
BspT104I TTCGAA 1 cut(s) 259
BssMI GATC 3 cut(s) 204, 244, 331
Bst4CI ACNGT 1 cut(s) 265
BstBI TTCGAA 1 cut(s) 259
BstC8I GCNNGC 3 cut(s) 216, 220, 293
BstKTI GATC 3 cut(s) 207, 247, 334
BstMBI GATC 3 cut(s) 204, 244, 331
BstMWI GCNNNNNNNGC 5 cut(s) 149, 158, 167, 176, 185
BstNSI RCATGY 1 cut(s) 347
BstSFI CTRYAG 1 cut(s) 153
BstV1I GCAGC 3 cut(s) 139, 167, 170
Cac8I GCNNGC 3 cut(s) 216, 220, 293
Cfr13I GGNCC 1 cut(s) 198
CviAII CATG 2 cut(s) 166, 344
CviJI RGCY 5 cut(s) 63, 161, 170, 188, 295
CviKI_1 RGCY 5 cut(s) 63, 161, 170, 188, 295
DpnI GATC 3 cut(s) 206, 246, 333
DpnII GATC 3 cut(s) 204, 244, 331
Eco47I GGWCC 1 cut(s) 198
FaeI CATG 2 cut(s) 169, 347
FaiI YATR 4 cut(s) 23, 167, 275, 345
FatI CATG 2 cut(s) 165, 343
FauI CCCGC 1 cut(s) 136
Fnu4HI GCNGC 3 cut(s) 153, 156, 159
Fsp4HI GCNGC 3 cut(s) 153, 156, 159
GluI GCNGC 3 cut(s) 153, 156, 159
Hin1II CATG 2 cut(s) 169, 347
HinfI GANTC 1 cut(s) 256
Hpy188I TCNGA 1 cut(s) 202
Hpy188III TCNNGA 2 cut(s) 38, 248
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4V TGCA 2 cut(s) 83, 155
HpyF10VI GCNNNNNNNGC 5 cut(s) 149, 158, 167, 176, 185
Hsp92II CATG 2 cut(s) 169, 347
Kzo9I GATC 3 cut(s) 204, 244, 331
LmnI GCTCC 1 cut(s) 184
LpnPI CCDG 5 cut(s) 55, 86, 233, 305, 333
Lsp1109I GCAGC 3 cut(s) 139, 167, 170
MalI GATC 3 cut(s) 206, 246, 333
MboI GATC 3 cut(s) 204, 244, 331
MfeI CAATTG 1 cut(s) 11
MluCI AATT 1 cut(s) 11
MnlI CCTC 2 cut(s) 74, 77
MroXI GAANNNNTTC 1 cut(s) 255
MseI TTAA 4 cut(s) 240, 270, 315, 349
MslI CAYNNNNRTG 1 cut(s) 13
MunI CAATTG 1 cut(s) 11
MwoI GCNNNNNNNGC 5 cut(s) 149, 158, 167, 176, 185
NdeII GATC 3 cut(s) 204, 244, 331
NlaIII CATG 2 cut(s) 169, 347
NspI RCATGY 1 cut(s) 347
NspV TTCGAA 1 cut(s) 259
OliI CACNNNNGTG 1 cut(s) 13
PdmI GAANNNNTTC 1 cut(s) 255
PfeI GAWTC 1 cut(s) 256
PflMI CCANNNNNTGG 1 cut(s) 195
PkrI GCNGC 3 cut(s) 154, 157, 160
PspPI GGNCC 1 cut(s) 198
PstI CTGCAG 1 cut(s) 157
RseI CAYNNNNRTG 1 cut(s) 13
SaqAI TTAA 4 cut(s) 240, 270, 315, 349
SatI GCNGC 3 cut(s) 153, 156, 159
Sau3AI GATC 3 cut(s) 204, 244, 331
Sau96I GGNCC 1 cut(s) 198
SetI ASST 2 cut(s) 163, 297
SfcI CTRYAG 1 cut(s) 153
SfuI TTCGAA 1 cut(s) 259
SinI GGWCC 1 cut(s) 198
SmiMI CAYNNNNRTG 1 cut(s) 13
Sse9I AATT 1 cut(s) 11
SsiI CCGC 1 cut(s) 143
TaaI ACNGT 1 cut(s) 265
TaqI TCGA 2 cut(s) 259, 340
TasI AATT 1 cut(s) 11
TfiI GAWTC 1 cut(s) 256
Tru1I TTAA 4 cut(s) 240, 270, 315, 349
Tru9I TTAA 4 cut(s) 240, 270, 315, 349
TseI GCWGC 3 cut(s) 152, 155, 158
TspDTI ATGAA 2 cut(s) 115, 316
Van91I CCANNNNNTGG 1 cut(s) 195
VpaK11BI GGWCC 1 cut(s) 198
XceI RCATGY 1 cut(s) 347
XmnI GAANNNNTTC 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.