Rmu_sc0034532.1_g000001

Plasma membrane ATPase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0034532.1
OG0000545
Physical Location & Seq
Forward (+)
1 .. 1989
1989 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0034532.1_g000001.1.cds

Sequence Viewer

Length: 1034 bp
gctctgatgaagttaaagagcggttggattcatttggttacaataagcttgaagaaaagaaggaaagcaaacttttaaagtttttggggtttatgtggaatcctctgtcctgggtcatggaagctgcagctatcatagccattgtgtttacccaaggagggaaaaaagatgccgattatcatgattttgttggcatcatcgtcctactcattatcaattccaccatcagttttatagaggaaaacaatgcaggcaatgctgctgctgctcttatggctcggttggccccaaaagcgaaggtcttgcgtgatggaaaatggagtgaagaagatgctgctatattggttcctggagacataattagcatcaaacttggtgatattgttccagctgatgcacgtcttcttcttgaaggagatcctctgaagattgatcagtctgctcttactggagaatcacttccagtgactaaaaatcctggtgatggggtttactcaggatcaacatgtaaacaaggagaaattgaagcagttgttattgcaactggcgtccacactttttttggaaaggcagctcaccttgtggagaacacaacacatgttggccatttccagcaggttttaacatcaattggaaacttctgcatttgttcaattgctgttgggatggtgatcgaaatcatagtaatatatggaattcatggaagggagtaccgtgttggtattgataacctacttgtcctcctaattggtggcatccctattgctatgccaactgttctttctgttacaatggcaattggttctcatcgcttgtcccagcagggtgccataaccaagagaatgacagccattgaagaaatggcaggaatggatgtgctatgcagtgataaaacagggacacttacacttaacaagctcacagtagacaaaaatatgattgaggttttactcttgtcccttcagctaactttaaccttaaaccatctggtataccatttgcagagtatactaagtcacttcacagaagcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

343

Amino Acids

37.09

Weight (kDa)

5.48

Isoelectric Point (pI)

28.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000545)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36571
pyrus_communis pycom02g01560 pycom08g10820 pycom09g05820 pycom13g21850 pycom14g16010
rosa_chinensis RchiOBHm_Chr2g0094861 RchiOBHm_Chr2g0124911 RchiOBHm_Chr2g0138581 RchiOBHm_Chr2g0160851 RchiOBHm_Chr4g0407411
rosa_laevigata RLG00000001652 RLG00000001872 RLG00000002037 RLG00000003076 RLG00000006419 RLG00000016771 RLG00000017383 RLG00000022851 RLG00000030563 RLG00000033869 RLG00000034176
rosa_multiflora Rmu_co8013424.1_g000001 Rmu_co8016716.1_g000001 Rmu_co8183472.1_g000001 Rmu_co8254047.1_g000001 Rmu_co8354891.1_g000001 Rmu_sc0000124.1_g000003 Rmu_sc0002132.1_g000027 Rmu_sc0003007.1_g000011 Rmu_sc0003221.1_g000096 Rmu_sc0003221.1_g000097 Rmu_sc0005119.1_g000004 Rmu_sc0008057.1_g000005 Rmu_sc0034532.1_g000001 Rmu_sc0036406.1_g000001 Rmu_ssc0000008.1_g000009
rosa_roxburghii Rroxscaffold_1G00030520 Rroxscaffold_2G00107360 Rroxscaffold_2G00153420 Rroxscaffold_5G00335750 Rroxscaffold_5G00351760 Rroxscaffold_5G00352080 Rroxscaffold_6G00419090
rosa_rugosa Rorug01G0341800 Rorug01G0341900 Rorug02G0180200 Rorug02G0180300 Rorug03G0186100 Rorug03G0186200 Rorug03G0284800 Rorug04G0104500 Rorug05G0246300 Rorug06G0108400 Rorug06G0471500 Rorug06G0510400
rosa_samantha Rh1AG159000 Rh1CG148200 Rh1CG189900 Rh2AG552800 Rh2BG473900 Rh2BG612100 Rh2BG612300 Rh2DG094500 Rh2DG482600 Rh3BG234000 Rh3CG320000 Rh4AG144200 Rh4BG127900 Rh4DG097300 Rh5AG128900 Rh5AG381200 Rh5BG363000 Rh5DG491900 Rh6AG048400 Rh6BG168100 Rh6CG005800 Rh6DG006000 Rh7AG255100 Rh7BG360600 Rh7CG271700 Rh7CG482300 Rh7DG451200
rosa_wichuraiana Rw4G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 606
AccB1I GGYRCC 1 cut(s) 826
AccBSI CCGCTC 1 cut(s) 21
AccI GTMKAC 3 cut(s) 926, 992, 1008
AciI CCGC 1 cut(s) 21
AclWI GGATC 2 cut(s) 412, 507
AcoI YGGCCR 1 cut(s) 603
AcsI RAATTY 1 cut(s) 695
AcuI CTGAAG 2 cut(s) 445, 946
AcyI GRCGYC 1 cut(s) 548
AdeI CACNNNGTG 1 cut(s) 582
AfaI GTAC 1 cut(s) 712
AfiI CCNNNNNNNGG 2 cut(s) 158, 484
AflIII ACRYGT 2 cut(s) 505, 597
AgsI TTSAA 5 cut(s) 52, 412, 526, 653, 856
AjiI CACGTC 1 cut(s) 400
AjnI CCWGG 3 cut(s) 109, 348, 477
AjuI GAANNNNNNNTTGG 2 cut(s) 765, 797
AluBI AGCT 7 cut(s) 48, 124, 130, 391, 574, 918, 966
AluI AGCT 7 cut(s) 48, 124, 130, 391, 574, 918, 966
Alw26I GTCTC 1 cut(s) 347
AlwI GGATC 2 cut(s) 412, 507
AoxI GGCC 2 cut(s) 284, 603
ApeKI GCWGC 7 cut(s) 124, 127, 259, 262, 265, 334, 571
ApoI RAATTY 1 cut(s) 695
Asp700I GAANNNNTTC 1 cut(s) 458
AspS9I GGNCC 1 cut(s) 285
AsuHPI GGTGA 4 cut(s) 388, 493, 568, 681
BalI TGGCCA 1 cut(s) 605
BanI GGYRCC 1 cut(s) 826
BbsI GAAGAC 1 cut(s) 394
BbvI GCAGC 7 cut(s) 111, 139, 246, 249, 252, 321, 583
BccI CCATC 5 cut(s) 232, 304, 478, 660, 992
BcgI CGANNNNNNTGC 2 cut(s) 285, 319
BciT130I CCWGG 3 cut(s) 111, 350, 479
BclI TGATCA 1 cut(s) 432
BcoDI GTCTC 1 cut(s) 347
BfmI CTRYAG 1 cut(s) 125
BfuAI ACCTGC 1 cut(s) 606
BisI GCNGC 7 cut(s) 125, 128, 260, 263, 266, 335, 572
BlsI GCNGC 7 cut(s) 126, 129, 261, 264, 267, 336, 573
Bme1390I CCNGG 3 cut(s) 111, 350, 479
BmgBI CACGTC 1 cut(s) 400
BmgT120I GGNCC 1 cut(s) 285
BmiI GGNNCC 3 cut(s) 287, 347, 828
BmrFI CCNGG 3 cut(s) 111, 350, 479
BmsI GCATC 6 cut(s) 159, 203, 321, 374, 384, 764
BpiI GAAGAC 1 cut(s) 394
BpmI CTGGAG 2 cut(s) 371, 470
BsaBI GATNNNNATC 2 cut(s) 670, 676
BsaHI GRCGYC 1 cut(s) 548
BsaJI CCNNGG 2 cut(s) 110, 153
BsaXI ACNNNNNCTCC 2 cut(s) 725, 755
Bsc4I CCNNNNNNNGG 2 cut(s) 158, 484
Bse1I ACTGG 3 cut(s) 453, 463, 549
Bse3DI GCAATG 1 cut(s) 261
Bse8I GATNNNNATC 2 cut(s) 670, 676
BseBI CCWGG 3 cut(s) 111, 350, 479
BseDI CCNNGG 2 cut(s) 110, 153
BseGI GGATG 3 cut(s) 671, 755, 879
BseJI GATNNNNATC 2 cut(s) 670, 676
BseLI CCNNNNNNNGG 2 cut(s) 158, 484
BseMI GCAATG 1 cut(s) 261
BseMII CTCAG 1 cut(s) 509
BseNI ACTGG 3 cut(s) 453, 463, 549
BseXI GCAGC 7 cut(s) 111, 139, 246, 249, 252, 321, 583
BseYI CCCAGC 1 cut(s) 818
BshFI GGCC 2 cut(s) 286, 605
BshNI GGYRCC 1 cut(s) 826
BslFI GGGAC 3 cut(s) 801, 912, 942
BslI CCNNNNNNNGG 2 cut(s) 158, 484
BsmAI GTCTC 1 cut(s) 347
BsmFI GGGAC 3 cut(s) 801, 912, 942
BsnI GGCC 2 cut(s) 286, 605
Bsp143I GATC 4 cut(s) 417, 432, 499, 671
BspACI CCGC 1 cut(s) 21
BspANI GGCC 2 cut(s) 286, 605
BspCNI CTCAG 1 cut(s) 508
BspHI TCATGA 1 cut(s) 180
BspLI GGNNCC 3 cut(s) 287, 347, 828
BspMAI CTGCAG 1 cut(s) 129
BspMI ACCTGC 1 cut(s) 606
BspPI GGATC 2 cut(s) 412, 507
BspT107I GGYRCC 1 cut(s) 826
BsrBI CCGCTC 1 cut(s) 21
BsrDI GCAATG 1 cut(s) 261
BsrI ACTGG 3 cut(s) 453, 463, 549
BssECI CCNNGG 2 cut(s) 110, 153
BssMI GATC 4 cut(s) 417, 432, 499, 671
BssNAI GTATAC 2 cut(s) 993, 1009
BssNI GRCGYC 1 cut(s) 548
BssT1I CCWWGG 1 cut(s) 153
Bst1107I GTATAC 2 cut(s) 993, 1009
Bst2UI CCWGG 3 cut(s) 111, 350, 479
Bst4CI ACNGT 3 cut(s) 715, 777, 924
BstACI GRCGYC 1 cut(s) 548
BstAPI GCANNNNNTGC 1 cut(s) 256
BstC8I GCNNGC 1 cut(s) 252
BstDEI CTNAG 2 cut(s) 495, 1012
BstF5I GGATG 3 cut(s) 671, 755, 879
BstKTI GATC 4 cut(s) 420, 435, 502, 674
BstMAI GTCTC 1 cut(s) 347
BstMBI GATC 4 cut(s) 417, 432, 499, 671
BstMWI GCNNNNNNNGC 6 cut(s) 136, 256, 265, 274, 283, 292
BstNI CCWGG 3 cut(s) 111, 350, 479
BstNSI RCATGY 2 cut(s) 509, 601
BstSCI CCNGG 3 cut(s) 109, 348, 477
BstSFI CTRYAG 1 cut(s) 125
BstV1I GCAGC 7 cut(s) 111, 139, 246, 249, 252, 321, 583
BstV2I GAAGAC 1 cut(s) 394
BstX2I RGATCY 1 cut(s) 417
BstYI RGATCY 1 cut(s) 417
BstZ17I GTATAC 2 cut(s) 993, 1009
BsuRI GGCC 2 cut(s) 286, 605
BtgZI GCGATG 1 cut(s) 793
BtrI CACGTC 1 cut(s) 400
BtsCI GGATG 3 cut(s) 671, 755, 879
BtsI GCAGTG 1 cut(s) 891
BtsIMutI CAGTG 2 cut(s) 470, 891
BveI ACCTGC 1 cut(s) 606
Cac8I GCNNGC 1 cut(s) 252
CciI TCATGA 1 cut(s) 180
Cfr13I GGNCC 1 cut(s) 285
CseI GACGC 1 cut(s) 537
Csp6I GTAC 1 cut(s) 711
CviAII CATG 5 cut(s) 117, 181, 506, 598, 700
CviQI GTAC 1 cut(s) 711
DdeI CTNAG 2 cut(s) 495, 1012
DpnI GATC 4 cut(s) 419, 434, 501, 673
DpnII GATC 4 cut(s) 417, 432, 499, 671
DraI TTTAAA 1 cut(s) 77
DraIII CACNNNGTG 1 cut(s) 582
EaeI YGGCCR 1 cut(s) 603
Eco130I CCWWGG 1 cut(s) 153
Eco57I CTGAAG 2 cut(s) 445, 946
EcoRI GAATTC 1 cut(s) 695
EcoRII CCWGG 3 cut(s) 109, 348, 477
EcoT14I CCWWGG 1 cut(s) 153
ErhI CCWWGG 1 cut(s) 153
FaeI CATG 5 cut(s) 120, 184, 509, 601, 703
FaqI GGGAC 3 cut(s) 801, 912, 942
FatI CATG 5 cut(s) 116, 180, 505, 597, 699
FbaI TGATCA 1 cut(s) 432
FblI GTMKAC 3 cut(s) 926, 992, 1008
Fnu4HI GCNGC 7 cut(s) 125, 128, 260, 263, 266, 335, 572
FokI GGATG 3 cut(s) 678, 742, 886
Fsp4HI GCNGC 7 cut(s) 125, 128, 260, 263, 266, 335, 572
GluI GCNGC 7 cut(s) 125, 128, 260, 263, 266, 335, 572
GsaI CCCAGC 1 cut(s) 822
GsuI CTGGAG 2 cut(s) 371, 470
HaeIII GGCC 2 cut(s) 286, 605
HgaI GACGC 1 cut(s) 537
Hin1I GRCGYC 1 cut(s) 548
Hin1II CATG 5 cut(s) 120, 184, 509, 601, 703
HindIII AAGCTT 1 cut(s) 46
HinfI GANTC 3 cut(s) 28, 99, 454
HphI GGTGA 4 cut(s) 388, 493, 568, 681
Hpy166II GTNNAC 7 cut(s) 149, 492, 511, 552, 927, 993, 1009
Hpy188I TCNGA 2 cut(s) 6, 425
Hpy188III TCNNGA 3 cut(s) 181, 409, 497
Hpy8I GTNNAC 7 cut(s) 149, 492, 511, 552, 927, 993, 1009
HpyAV CCTTC 5 cut(s) 54, 291, 406, 698, 970
HpyCH4III ACNGT 3 cut(s) 715, 777, 924
HpyCH4IV ACGT 1 cut(s) 399
HpyCH4V TGCA 7 cut(s) 127, 250, 397, 541, 644, 884, 1002
HpyF10VI GCNNNNNNNGC 6 cut(s) 136, 256, 265, 274, 283, 292
HpyF3I CTNAG 2 cut(s) 495, 1012
HpySE526I ACGT 1 cut(s) 399
Hsp92I GRCGYC 1 cut(s) 548
Hsp92II CATG 5 cut(s) 120, 184, 509, 601, 703
Ksp22I TGATCA 1 cut(s) 432
Kzo9I GATC 4 cut(s) 417, 432, 499, 671
Lsp1109I GCAGC 7 cut(s) 111, 139, 246, 249, 252, 321, 583
LweI GCATC 6 cut(s) 159, 203, 321, 374, 384, 764
MaeII ACGT 1 cut(s) 399
MaeIII GTNAC 4 cut(s) 37, 465, 786, 1015
MalI GATC 4 cut(s) 419, 434, 501, 673
MbiI CCGCTC 1 cut(s) 21
MboI GATC 4 cut(s) 417, 432, 499, 671
MboII GAAGA 7 cut(s) 64, 337, 340, 394, 397, 438, 868
MfeI CAATTG 3 cut(s) 629, 653, 797
MflI RGATCY 1 cut(s) 417
MlsI TGGCCA 1 cut(s) 605
MluCI AATT 8 cut(s) 216, 359, 521, 629, 653, 695, 746, 797
MluNI TGGCCA 1 cut(s) 605
MmeI TCCRAC 1 cut(s) 5
MnlI CCTC 6 cut(s) 113, 151, 231, 431, 751, 936
Mox20I TGGCCA 1 cut(s) 605
MroXI GAANNNNTTC 1 cut(s) 458
MscI TGGCCA 1 cut(s) 605
MseI TTAA 6 cut(s) 14, 76, 622, 911, 973, 979
Msp20I TGGCCA 1 cut(s) 605
MspA1I CMGCKG 1 cut(s) 391
MspR9I CCNGG 3 cut(s) 111, 350, 479
MunI CAATTG 3 cut(s) 629, 653, 797
MvaI CCWGG 3 cut(s) 111, 350, 479
MwoI GCNNNNNNNGC 6 cut(s) 136, 256, 265, 274, 283, 292
NdeII GATC 4 cut(s) 417, 432, 499, 671
NlaIII CATG 5 cut(s) 120, 184, 509, 601, 703
NlaIV GGNNCC 3 cut(s) 287, 347, 828
NmuCI GTSAC 2 cut(s) 465, 1015
NspI RCATGY 2 cut(s) 509, 601
PagI TCATGA 1 cut(s) 180
PciI ACATGT 2 cut(s) 505, 597
PdmI GAANNNNTTC 1 cut(s) 458
PfeI GAWTC 3 cut(s) 28, 99, 454
PfoI TCCNGGA 1 cut(s) 348
PkrI GCNGC 7 cut(s) 126, 129, 261, 264, 267, 336, 573
PscI ACATGT 2 cut(s) 505, 597
Psp6I CCWGG 3 cut(s) 109, 348, 477
PspFI CCCAGC 1 cut(s) 818
PspGI CCWGG 3 cut(s) 109, 348, 477
PspN4I GGNNCC 3 cut(s) 287, 347, 828
PspPI GGNCC 1 cut(s) 285
PstI CTGCAG 1 cut(s) 129
PsuI RGATCY 1 cut(s) 417
PvuII CAGCTG 1 cut(s) 391
RsaI GTAC 1 cut(s) 712
RsaNI GTAC 1 cut(s) 711
SaqAI TTAA 6 cut(s) 14, 76, 622, 911, 973, 979
SatI GCNGC 7 cut(s) 125, 128, 260, 263, 266, 335, 572
Sau3AI GATC 4 cut(s) 417, 432, 499, 671
Sau96I GGNCC 1 cut(s) 285
ScrFI CCNGG 3 cut(s) 111, 350, 479
SfaNI GCATC 6 cut(s) 159, 203, 321, 374, 384, 764
SfcI CTRYAG 1 cut(s) 125
Sse9I AATT 8 cut(s) 216, 359, 521, 629, 653, 695, 746, 797
SsiI CCGC 1 cut(s) 21
StyD4I CCNGG 3 cut(s) 109, 348, 477
StyI CCWWGG 1 cut(s) 153
TaaI ACNGT 3 cut(s) 715, 777, 924
TaiI ACGT 1 cut(s) 402
TaqI TCGA 1 cut(s) 674
TasI AATT 8 cut(s) 216, 359, 521, 629, 653, 695, 746, 797
TfiI GAWTC 3 cut(s) 28, 99, 454
Tru1I TTAA 6 cut(s) 14, 76, 622, 911, 973, 979
Tru9I TTAA 6 cut(s) 14, 76, 622, 911, 973, 979
TscAI CASTG 2 cut(s) 470, 891
TseFI GTSAC 2 cut(s) 465, 1015
TseI GCWGC 7 cut(s) 124, 127, 259, 262, 265, 334, 571
Tsp45I GTSAC 2 cut(s) 465, 1015
TspDTI ATGAA 3 cut(s) 20, 23, 688
TspRI CASTG 2 cut(s) 470, 891
XapI RAATTY 1 cut(s) 695
XceI RCATGY 2 cut(s) 509, 601
XcmI CCANNNNNNNNNTGG 2 cut(s) 559, 858
XmiI GTMKAC 3 cut(s) 926, 992, 1008
XmnI GAANNNNTTC 1 cut(s) 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.