Rh7CG482300

ATPase 11, plasma

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
Physical Location & Seq
Reverse (-)
64796857 .. 64798158
1302 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG482300.1

Sequence Viewer

Length: 495 bp
ATGGCGGAAGAGAAGCCTGAAGTGCTTGACGCGGTGCTGAAGGAAACAGTTGATTTGGAAAACATACCCATTGAGGAGGTGCTTGAGAATCTGAGATGTAGCAAAGAGGGTCTCAGCAGTGAGGCTGCTGAGGAAAGATTAGCCATTTTTGGGCATAACAAGCTTGAGGAAAAGCAGGGGAAGCCTCTTGACTGGCAAGATTTTGCGGTTATTATTACTCTGCTGGTCATCAACTCCACCATTATTCGATTAAAACAAAATAGGCTGGTTCTTATTCGATTATGCTTATATATCTCTACTCTAAAGTACCTGTGGGAGTTATCATTTAACTGCAGTTTCAGTTCTCTATATTTATTTCCTCAGTTAGCAGAGTTGATGAAGATGCTCTTCAACGTTGAAACATACAGAGCTGCCATGATGGAATTTGAGATAAATATGTCAGAGATGCCACTTGGAAAACTGAATAAAAGCAATATCCAAAAGGGTAAGCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

164

Amino Acids

18.97

Weight (kDa)

5.2

Isoelectric Point (pI)

46.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cation_ATPase_N PF00690 21 - 63 4e-10 Cation transporter/ATPase, N-terminus
PARP_reg PF02877 118 - 163 4.9e-12 Poly(ADP-ribose) polymerase, regulatory domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000545)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36571
pyrus_communis pycom02g01560 pycom08g10820 pycom09g05820 pycom13g21850 pycom14g16010
rosa_chinensis RchiOBHm_Chr2g0094861 RchiOBHm_Chr2g0124911 RchiOBHm_Chr2g0138581 RchiOBHm_Chr2g0160851 RchiOBHm_Chr4g0407411
rosa_laevigata RLG00000001652 RLG00000001872 RLG00000002037 RLG00000003076 RLG00000006419 RLG00000016771 RLG00000017383 RLG00000022851 RLG00000030563 RLG00000033869 RLG00000034176
rosa_multiflora Rmu_co8013424.1_g000001 Rmu_co8016716.1_g000001 Rmu_co8183472.1_g000001 Rmu_co8254047.1_g000001 Rmu_co8354891.1_g000001 Rmu_sc0000124.1_g000003 Rmu_sc0002132.1_g000027 Rmu_sc0003007.1_g000011 Rmu_sc0003221.1_g000096 Rmu_sc0003221.1_g000097 Rmu_sc0005119.1_g000004 Rmu_sc0008057.1_g000005 Rmu_sc0034532.1_g000001 Rmu_sc0036406.1_g000001 Rmu_ssc0000008.1_g000009
rosa_roxburghii Rroxscaffold_1G00030520 Rroxscaffold_2G00107360 Rroxscaffold_2G00153420 Rroxscaffold_5G00335750 Rroxscaffold_5G00351760 Rroxscaffold_5G00352080 Rroxscaffold_6G00419090
rosa_rugosa Rorug01G0341800 Rorug01G0341900 Rorug02G0180200 Rorug02G0180300 Rorug03G0186100 Rorug03G0186200 Rorug03G0284800 Rorug04G0104500 Rorug05G0246300 Rorug06G0108400 Rorug06G0471500 Rorug06G0510400
rosa_samantha Rh1AG159000 Rh1CG148200 Rh1CG189900 Rh2AG552800 Rh2BG473900 Rh2BG612100 Rh2BG612300 Rh2DG094500 Rh2DG482600 Rh3BG234000 Rh3CG320000 Rh4AG144200 Rh4BG127900 Rh4DG097300 Rh5AG128900 Rh5AG381200 Rh5BG363000 Rh5DG491900 Rh6AG048400 Rh6BG168100 Rh6CG005800 Rh6DG006000 Rh7AG255100 Rh7BG360600 Rh7CG271700 Rh7CG482300 Rh7DG451200
rosa_wichuraiana Rw4G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 32
AciI CCGC 3 cut(s) 5, 32, 206
AclI AACGTT 1 cut(s) 393
AcsI RAATTY 1 cut(s) 422
AcuI CTGAAG 2 cut(s) 39, 59
AfaI GTAC 1 cut(s) 308
AfiI CCNNNNNNNGG 1 cut(s) 150
AgsI TTSAA 2 cut(s) 391, 398
AluBI AGCT 2 cut(s) 163, 410
AluI AGCT 2 cut(s) 163, 410
Alw26I GTCTC 1 cut(s) 116
ApeKI GCWGC 2 cut(s) 125, 410
ApoI RAATTY 1 cut(s) 422
BbvCI CCTCAGC 1 cut(s) 129
BbvI GCAGC 2 cut(s) 112, 397
BccI CCATC 1 cut(s) 412
BcoDI GTCTC 1 cut(s) 116
BfmI CTRYAG 1 cut(s) 331
BisI GCNGC 2 cut(s) 126, 411
BlsI GCNGC 2 cut(s) 127, 412
BmsI GCATC 2 cut(s) 372, 435
Bpu10I CCTNAGC 1 cut(s) 129
BpuEI CTTGAG 2 cut(s) 104, 185
BsaI GGTCTC 1 cut(s) 116
Bsc4I CCNNNNNNNGG 1 cut(s) 150
Bse1I ACTGG 1 cut(s) 197
BseLI CCNNNNNNNGG 1 cut(s) 150
BseMII CTCAG 4 cut(s) 83, 120, 127, 374
BseNI ACTGG 1 cut(s) 197
BseRI GAGGAG 1 cut(s) 89
BseXI GCAGC 2 cut(s) 112, 397
Bsh1236I CGCG 1 cut(s) 32
BslI CCNNNNNNNGG 1 cut(s) 150
BsmAI GTCTC 1 cut(s) 116
Bso31I GGTCTC 1 cut(s) 116
BspACI CCGC 3 cut(s) 5, 32, 206
BspCNI CTCAG 4 cut(s) 84, 121, 126, 373
BspFNI CGCG 1 cut(s) 32
BspMAI CTGCAG 1 cut(s) 335
BspQI GCTCTTC 1 cut(s) 392
BspTNI GGTCTC 1 cut(s) 116
BsrI ACTGG 1 cut(s) 197
Bst4CI ACNGT 1 cut(s) 49
Bst6I CTCTTC 2 cut(s) 3, 392
BstDEI CTNAG 4 cut(s) 92, 113, 129, 360
BstFNI CGCG 1 cut(s) 32
BstMAI GTCTC 1 cut(s) 116
BstMWI GCNNNNNNNGC 3 cut(s) 22, 160, 181
BstSFI CTRYAG 1 cut(s) 331
BstUI CGCG 1 cut(s) 32
BstV1I GCAGC 2 cut(s) 112, 397
BtsI GCAGTG 1 cut(s) 124
BtsIMutI CAGTG 1 cut(s) 124
CseI GACGC 1 cut(s) 38
Csp6I GTAC 1 cut(s) 307
CviAII CATG 1 cut(s) 415
CviJI RGCY 7 cut(s) 16, 125, 143, 163, 184, 265, 410
CviKI_1 RGCY 7 cut(s) 16, 125, 143, 163, 184, 265, 410
CviQI GTAC 1 cut(s) 307
DdeI CTNAG 4 cut(s) 92, 113, 129, 360
Eam1104I CTCTTC 2 cut(s) 3, 392
EarI CTCTTC 2 cut(s) 3, 392
EciI GGCGGA 1 cut(s) 20
Eco31I GGTCTC 1 cut(s) 116
Eco57I CTGAAG 2 cut(s) 39, 59
FaeI CATG 1 cut(s) 418
FaiI YATR 9 cut(s) 65, 156, 283, 289, 291, 349, 403, 416, 437
FalI AAGNNNNNCTT 2 cut(s) 371, 403
FatI CATG 1 cut(s) 414
Fnu4HI GCNGC 2 cut(s) 126, 411
Fsp4HI GCNGC 2 cut(s) 126, 411
GluI GCNGC 2 cut(s) 126, 411
HgaI GACGC 1 cut(s) 38
Hin1II CATG 1 cut(s) 418
HindIII AAGCTT 1 cut(s) 161
HinfI GANTC 1 cut(s) 88
Hpy188I TCNGA 2 cut(s) 93, 442
Hpy188III TCNNGA 1 cut(s) 188
HpyAV CCTTC 1 cut(s) 34
HpyCH4III ACNGT 1 cut(s) 49
HpyCH4IV ACGT 1 cut(s) 393
HpyCH4V TGCA 1 cut(s) 333
HpyF10VI GCNNNNNNNGC 3 cut(s) 22, 160, 181
HpyF3I CTNAG 4 cut(s) 92, 113, 129, 360
HpySE526I ACGT 1 cut(s) 393
Hsp92II CATG 1 cut(s) 418
LguI GCTCTTC 1 cut(s) 392
LpnPI CCDG 6 cut(s) 30, 161, 178, 209, 251, 323
Lsp1109I GCAGC 2 cut(s) 112, 397
LweI GCATC 2 cut(s) 372, 435
MaeII ACGT 1 cut(s) 393
MboII GAAGA 3 cut(s) 20, 379, 391
MluCI AATT 1 cut(s) 422
MnlI CCTC 8 cut(s) 67, 70, 100, 115, 124, 160, 195, 369
MseI TTAA 2 cut(s) 251, 327
MvnI CGCG 1 cut(s) 32
MwoI GCNNNNNNNGC 3 cut(s) 22, 160, 181
NlaIII CATG 1 cut(s) 418
PciSI GCTCTTC 1 cut(s) 392
PfeI GAWTC 1 cut(s) 88
PkrI GCNGC 2 cut(s) 127, 412
Psp1406I AACGTT 1 cut(s) 393
PstI CTGCAG 1 cut(s) 335
RsaI GTAC 1 cut(s) 308
RsaNI GTAC 1 cut(s) 307
SapI GCTCTTC 1 cut(s) 392
SaqAI TTAA 2 cut(s) 251, 327
SatI GCNGC 2 cut(s) 126, 411
SetI ASST 5 cut(s) 81, 165, 312, 396, 412
SfaNI GCATC 2 cut(s) 372, 435
SfcI CTRYAG 1 cut(s) 331
SmlI CTYRAG 2 cut(s) 83, 164
SmoI CTYRAG 2 cut(s) 83, 164
Sse9I AATT 1 cut(s) 422
SsiI CCGC 3 cut(s) 5, 32, 206
TaaI ACNGT 1 cut(s) 49
TaiI ACGT 1 cut(s) 396
TaqI TCGA 2 cut(s) 247, 277
TasI AATT 1 cut(s) 422
TfiI GAWTC 1 cut(s) 88
Tru1I TTAA 2 cut(s) 251, 327
Tru9I TTAA 2 cut(s) 251, 327
TscAI CASTG 1 cut(s) 124
TseI GCWGC 2 cut(s) 125, 410
TspDTI ATGAA 1 cut(s) 392
TspRI CASTG 1 cut(s) 124
XapI RAATTY 1 cut(s) 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.