Rmu_sc0003221.1_g000097

Plasma membrane ATPase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003221.1
Physical Location & Seq
Forward (+)
447315 .. 447640
326 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003221.1_g000097.1.cds

Sequence Viewer

Length: 228 bp
atgcagctgcagcgcttatggcccggcttgctccaaaagccaaggttacctcgctatttgatttctgttttgcgtgatgggaaatggaatgaggaagatgcagctgtgctggttcctggagacattattagtatcaagttaggagatataattcctgctgatgctcgcctgcttcaaggagatcctttgaagatcgaccaggtagctaagttatattctaatgtgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

75

Amino Acids

8.45

Weight (kDa)

8.06

Isoelectric Point (pI)

30.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000545)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36571
pyrus_communis pycom02g01560 pycom08g10820 pycom09g05820 pycom13g21850 pycom14g16010
rosa_chinensis RchiOBHm_Chr2g0094861 RchiOBHm_Chr2g0124911 RchiOBHm_Chr2g0138581 RchiOBHm_Chr2g0160851 RchiOBHm_Chr4g0407411
rosa_laevigata RLG00000001652 RLG00000001872 RLG00000002037 RLG00000003076 RLG00000006419 RLG00000016771 RLG00000017383 RLG00000022851 RLG00000030563 RLG00000033869 RLG00000034176
rosa_multiflora Rmu_co8013424.1_g000001 Rmu_co8016716.1_g000001 Rmu_co8183472.1_g000001 Rmu_co8254047.1_g000001 Rmu_co8354891.1_g000001 Rmu_sc0000124.1_g000003 Rmu_sc0002132.1_g000027 Rmu_sc0003007.1_g000011 Rmu_sc0003221.1_g000096 Rmu_sc0003221.1_g000097 Rmu_sc0005119.1_g000004 Rmu_sc0008057.1_g000005 Rmu_sc0034532.1_g000001 Rmu_sc0036406.1_g000001 Rmu_ssc0000008.1_g000009
rosa_roxburghii Rroxscaffold_1G00030520 Rroxscaffold_2G00107360 Rroxscaffold_2G00153420 Rroxscaffold_5G00335750 Rroxscaffold_5G00351760 Rroxscaffold_5G00352080 Rroxscaffold_6G00419090
rosa_rugosa Rorug01G0341800 Rorug01G0341900 Rorug02G0180200 Rorug02G0180300 Rorug03G0186100 Rorug03G0186200 Rorug03G0284800 Rorug04G0104500 Rorug05G0246300 Rorug06G0108400 Rorug06G0471500 Rorug06G0510400
rosa_samantha Rh1AG159000 Rh1CG148200 Rh1CG189900 Rh2AG552800 Rh2BG473900 Rh2BG612100 Rh2BG612300 Rh2DG094500 Rh2DG482600 Rh3BG234000 Rh3CG320000 Rh4AG144200 Rh4BG127900 Rh4DG097300 Rh5AG128900 Rh5AG381200 Rh5BG363000 Rh5DG491900 Rh6AG048400 Rh6BG168100 Rh6CG005800 Rh6DG006000 Rh7AG255100 Rh7BG360600 Rh7CG271700 Rh7CG482300 Rh7DG451200
rosa_wichuraiana Rw4G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 176
AfeI AGCGCT 1 cut(s) 14
AgsI TTSAA 2 cut(s) 176, 190
AjnI CCWGG 2 cut(s) 115, 198
AluBI AGCT 3 cut(s) 7, 104, 206
AluI AGCT 3 cut(s) 7, 104, 206
Alw26I GTCTC 1 cut(s) 114
AlwI GGATC 1 cut(s) 176
Aor51HI AGCGCT 1 cut(s) 14
AoxI GGCC 1 cut(s) 20
ApeKI GCWGC 4 cut(s) 4, 7, 10, 101
AspLEI GCGC 1 cut(s) 15
AspS9I GGNCC 1 cut(s) 21
AsuC2I CCSGG 1 cut(s) 24
BbvI GCAGC 3 cut(s) 16, 22, 113
BccI CCATC 1 cut(s) 71
BciT130I CCWGG 2 cut(s) 117, 200
BcnI CCSGG 1 cut(s) 24
BcoDI GTCTC 1 cut(s) 114
BfmI CTRYAG 1 cut(s) 8
BfoI RGCGCY 1 cut(s) 16
BisI GCNGC 4 cut(s) 5, 8, 11, 102
BlsI GCNGC 4 cut(s) 6, 9, 12, 103
Bme1390I CCNGG 3 cut(s) 24, 117, 200
BmgT120I GGNCC 1 cut(s) 21
BmiI GGNNCC 1 cut(s) 114
BmrFI CCNGG 3 cut(s) 24, 117, 200
BmsI GCATC 2 cut(s) 88, 151
BpmI CTGGAG 1 cut(s) 138
BpuMI CCSGG 1 cut(s) 24
BsaJI CCNNGG 1 cut(s) 41
BseBI CCWGG 2 cut(s) 117, 200
BseDI CCNNGG 1 cut(s) 41
BseXI GCAGC 3 cut(s) 16, 22, 113
BshFI GGCC 1 cut(s) 22
BsiSI CCGG 1 cut(s) 24
BsmAI GTCTC 1 cut(s) 114
BsnI GGCC 1 cut(s) 22
Bsp143I GATC 2 cut(s) 181, 192
BspANI GGCC 1 cut(s) 22
BspLI GGNNCC 1 cut(s) 114
BspMAI CTGCAG 1 cut(s) 12
BspPI GGATC 1 cut(s) 176
BssECI CCNNGG 1 cut(s) 41
BssMI GATC 2 cut(s) 181, 192
BssT1I CCWWGG 1 cut(s) 41
Bst2UI CCWGG 2 cut(s) 117, 200
BstC8I GCNNGC 3 cut(s) 29, 166, 170
BstDEI CTNAG 1 cut(s) 207
BstEII GGTNACC 1 cut(s) 45
BstH2I RGCGCY 1 cut(s) 16
BstHHI GCGC 1 cut(s) 15
BstKTI GATC 2 cut(s) 184, 195
BstMAI GTCTC 1 cut(s) 114
BstMBI GATC 2 cut(s) 181, 192
BstMWI GCNNNNNNNGC 4 cut(s) 10, 19, 28, 37
BstNI CCWGG 2 cut(s) 117, 200
BstPI GGTNACC 1 cut(s) 45
BstSCI CCNGG 3 cut(s) 22, 115, 198
BstSFI CTRYAG 1 cut(s) 8
BstV1I GCAGC 3 cut(s) 16, 22, 113
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
BsuRI GGCC 1 cut(s) 22
Cac8I GCNNGC 3 cut(s) 29, 166, 170
CfoI GCGC 1 cut(s) 15
Cfr13I GGNCC 1 cut(s) 21
CsiI ACCWGGT 1 cut(s) 198
CviJI RGCY 6 cut(s) 7, 22, 27, 40, 104, 206
CviKI_1 RGCY 6 cut(s) 7, 22, 27, 40, 104, 206
DdeI CTNAG 1 cut(s) 207
DpnI GATC 2 cut(s) 183, 194
DpnII GATC 2 cut(s) 181, 192
Eco130I CCWWGG 1 cut(s) 41
Eco47III AGCGCT 1 cut(s) 14
Eco91I GGTNACC 1 cut(s) 45
EcoO65I GGTNACC 1 cut(s) 45
EcoRII CCWGG 2 cut(s) 115, 198
EcoT14I CCWWGG 1 cut(s) 41
ErhI CCWWGG 1 cut(s) 41
FaiI YATR 3 cut(s) 19, 149, 214
Fnu4HI GCNGC 4 cut(s) 5, 8, 11, 102
Fsp4HI GCNGC 4 cut(s) 5, 8, 11, 102
GlaI GCGC 1 cut(s) 14
GluI GCNGC 4 cut(s) 5, 8, 11, 102
GsuI CTGGAG 1 cut(s) 138
HaeII RGCGCY 1 cut(s) 16
HaeIII GGCC 1 cut(s) 22
HapII CCGG 1 cut(s) 24
HhaI GCGC 1 cut(s) 15
Hin6I GCGC 1 cut(s) 13
HinP1I GCGC 1 cut(s) 13
HpaII CCGG 1 cut(s) 24
HpyCH4V TGCA 3 cut(s) 4, 10, 101
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 19, 28, 37
HpyF3I CTNAG 1 cut(s) 207
HspAI GCGC 1 cut(s) 13
Kzo9I GATC 2 cut(s) 181, 192
LmnI GCTCC 1 cut(s) 36
LpnPI CCDG 8 cut(s) 37, 95, 102, 129, 168, 182, 185, 212
Lsp1109I GCAGC 3 cut(s) 16, 22, 113
LweI GCATC 2 cut(s) 88, 151
MabI ACCWGGT 1 cut(s) 198
MaeIII GTNAC 1 cut(s) 45
MalI GATC 2 cut(s) 183, 194
MboI GATC 2 cut(s) 181, 192
MboII GAAGA 2 cut(s) 107, 202
MflI RGATCY 1 cut(s) 181
MluCI AATT 1 cut(s) 150
MnlI CCTC 2 cut(s) 60, 85
MspA1I CMGCKG 2 cut(s) 7, 104
MspI CCGG 1 cut(s) 24
MspR9I CCNGG 3 cut(s) 24, 117, 200
MvaI CCWGG 2 cut(s) 117, 200
MwoI GCNNNNNNNGC 4 cut(s) 10, 19, 28, 37
NciI CCSGG 1 cut(s) 24
NdeII GATC 2 cut(s) 181, 192
NlaIV GGNNCC 1 cut(s) 114
PfoI TCCNGGA 1 cut(s) 115
PkrI GCNGC 4 cut(s) 6, 9, 12, 103
Psp6I CCWGG 2 cut(s) 115, 198
PspEI GGTNACC 1 cut(s) 45
PspGI CCWGG 2 cut(s) 115, 198
PspN4I GGNNCC 1 cut(s) 114
PspPI GGNCC 1 cut(s) 21
PstI CTGCAG 1 cut(s) 12
PsuI RGATCY 1 cut(s) 181
PvuII CAGCTG 2 cut(s) 7, 104
SatI GCNGC 4 cut(s) 5, 8, 11, 102
Sau3AI GATC 2 cut(s) 181, 192
Sau96I GGNCC 1 cut(s) 21
ScrFI CCNGG 3 cut(s) 24, 117, 200
SetI ASST 6 cut(s) 9, 47, 52, 106, 204, 208
SexAI ACCWGGT 1 cut(s) 198
SfaNI GCATC 2 cut(s) 88, 151
SfcI CTRYAG 1 cut(s) 8
Sse9I AATT 1 cut(s) 150
StyD4I CCNGG 3 cut(s) 22, 115, 198
StyI CCWWGG 1 cut(s) 41
TaqI TCGA 1 cut(s) 195
TasI AATT 1 cut(s) 150
TseI GCWGC 4 cut(s) 4, 7, 10, 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.