Rroxscaffold_1G00030520

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000545
Physical Location & Seq
Forward (+)
40380885 .. 40385043
4159 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00030520.1

Sequence Viewer

Length: 513 bp
ATGGAGATGCATAGGACATTCAGAAGAGTGGGAGATACAAAAGGCTCTTTGCAGCATCATTCTTTGCAATTCGTAAAATGTTATATTAGAAATGCTAAAAAAAAAGGACAAACTTCTGCTACTTTTGTTGAAAACTCTTGGAATAATGTTTCTTTCTTGACCAATCTAGCTAGTGATCCCTTAGTTGGACTTGAACTAATCTTAGAATTTTTTTGGCTTTCTCCATTGATGCTAGTTGTACAAAAAAATCTTGAGATGGGCAAGGTACTATCTGTTGATGTTTCTTGTATAGCAGTTGTGACTAGCTACAACAGTCAACGTCCAAATCAAATACAATGGGCCATGAGAAGAGCAGTGTTTGATATAACTGAGATCCTCAAGCTAGTAAGAAGGCTTTACAGACTCATTCTAGATTCTGCAAAAGAGAGGGAAAATATTGAAGGGCGCACCGTTTTCTGCTTCTTCTGGCATATAATATTTACATGCAGCAGCTGCTCATATTTTTGTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

19.82

Weight (kDa)

9.28

Isoelectric Point (pI)

46.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000545)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36571
pyrus_communis pycom02g01560 pycom08g10820 pycom09g05820 pycom13g21850 pycom14g16010
rosa_chinensis RchiOBHm_Chr2g0094861 RchiOBHm_Chr2g0124911 RchiOBHm_Chr2g0138581 RchiOBHm_Chr2g0160851 RchiOBHm_Chr4g0407411
rosa_laevigata RLG00000001652 RLG00000001872 RLG00000002037 RLG00000003076 RLG00000006419 RLG00000016771 RLG00000017383 RLG00000022851 RLG00000030563 RLG00000033869 RLG00000034176
rosa_multiflora Rmu_co8013424.1_g000001 Rmu_co8016716.1_g000001 Rmu_co8183472.1_g000001 Rmu_co8254047.1_g000001 Rmu_co8354891.1_g000001 Rmu_sc0000124.1_g000003 Rmu_sc0002132.1_g000027 Rmu_sc0003007.1_g000011 Rmu_sc0003221.1_g000096 Rmu_sc0003221.1_g000097 Rmu_sc0005119.1_g000004 Rmu_sc0008057.1_g000005 Rmu_sc0034532.1_g000001 Rmu_sc0036406.1_g000001 Rmu_ssc0000008.1_g000009
rosa_roxburghii Rroxscaffold_1G00030520 Rroxscaffold_2G00107360 Rroxscaffold_2G00153420 Rroxscaffold_5G00335750 Rroxscaffold_5G00351760 Rroxscaffold_5G00352080 Rroxscaffold_6G00419090
rosa_rugosa Rorug01G0341800 Rorug01G0341900 Rorug02G0180200 Rorug02G0180300 Rorug03G0186100 Rorug03G0186200 Rorug03G0284800 Rorug04G0104500 Rorug05G0246300 Rorug06G0108400 Rorug06G0471500 Rorug06G0510400
rosa_samantha Rh1AG159000 Rh1CG148200 Rh1CG189900 Rh2AG552800 Rh2BG473900 Rh2BG612100 Rh2BG612300 Rh2DG094500 Rh2DG482600 Rh3BG234000 Rh3CG320000 Rh4AG144200 Rh4BG127900 Rh4DG097300 Rh5AG128900 Rh5AG381200 Rh5BG363000 Rh5DG491900 Rh6AG048400 Rh6BG168100 Rh6CG005800 Rh6DG006000 Rh7AG255100 Rh7BG360600 Rh7CG271700 Rh7CG482300 Rh7DG451200
rosa_wichuraiana Rw4G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 170, 367
AcsI RAATTY 1 cut(s) 206
AfaI GTAC 2 cut(s) 240, 267
AfiI CCNNNNNNNGG 1 cut(s) 185
AgsI TTSAA 3 cut(s) 131, 194, 440
AluBI AGCT 4 cut(s) 170, 306, 382, 492
AluI AGCT 4 cut(s) 170, 306, 382, 492
AlwI GGATC 2 cut(s) 170, 367
AlwNI CAGNNNCTG 1 cut(s) 492
AoxI GGCC 1 cut(s) 339
ApeKI GCWGC 4 cut(s) 52, 486, 489, 492
ApoI RAATTY 1 cut(s) 206
AspLEI GCGC 1 cut(s) 447
AspS9I GGNCC 1 cut(s) 339
BbvI GCAGC 4 cut(s) 64, 479, 498, 501
BccI CCATC 1 cut(s) 250
BfaI CTAG 6 cut(s) 167, 171, 233, 303, 383, 410
BisI GCNGC 4 cut(s) 53, 487, 490, 493
BlsI GCNGC 4 cut(s) 54, 488, 491, 494
BmgT120I GGNCC 1 cut(s) 339
BmsI GCATC 2 cut(s) 64, 219
BpuEI CTTGAG 2 cut(s) 272, 362
Bsc4I CCNNNNNNNGG 1 cut(s) 185
BseLI CCNNNNNNNGG 1 cut(s) 185
BseMII CTCAG 1 cut(s) 360
BseXI GCAGC 4 cut(s) 64, 479, 498, 501
BshFI GGCC 1 cut(s) 341
BslI CCNNNNNNNGG 1 cut(s) 185
BsnI GGCC 1 cut(s) 341
Bsp1407I TGTACA 1 cut(s) 238
Bsp143I GATC 2 cut(s) 175, 372
BspANI GGCC 1 cut(s) 341
BspCNI CTCAG 1 cut(s) 361
BspPI GGATC 2 cut(s) 170, 367
BspQI GCTCTTC 1 cut(s) 343
BsrGI TGTACA 1 cut(s) 238
BssMI GATC 2 cut(s) 175, 372
Bst4CI ACNGT 2 cut(s) 314, 451
Bst6I CTCTTC 2 cut(s) 19, 343
BstAPI GCANNNNNTGC 1 cut(s) 492
BstAUI TGTACA 1 cut(s) 238
BstDEI CTNAG 3 cut(s) 181, 202, 369
BstHHI GCGC 1 cut(s) 447
BstKTI GATC 2 cut(s) 178, 375
BstMBI GATC 2 cut(s) 175, 372
BstMWI GCNNNNNNNGC 1 cut(s) 492
BstNSI RCATGY 1 cut(s) 486
BstV1I GCAGC 4 cut(s) 64, 479, 498, 501
BstX2I RGATCY 1 cut(s) 372
BstYI RGATCY 1 cut(s) 372
BsuRI GGCC 1 cut(s) 341
BtsI GCAGTG 1 cut(s) 360
BtsIMutI CAGTG 1 cut(s) 360
CaiI CAGNNNCTG 1 cut(s) 492
CfoI GCGC 1 cut(s) 447
Cfr13I GGNCC 1 cut(s) 339
Csp6I GTAC 2 cut(s) 239, 266
CviAII CATG 2 cut(s) 343, 483
CviJI RGCY 8 cut(s) 45, 170, 217, 306, 341, 382, 394, 492
CviKI_1 RGCY 8 cut(s) 45, 170, 217, 306, 341, 382, 394, 492
CviQI GTAC 2 cut(s) 239, 266
DdeI CTNAG 3 cut(s) 181, 202, 369
DpnI GATC 2 cut(s) 177, 374
DpnII GATC 2 cut(s) 175, 372
Eam1104I CTCTTC 2 cut(s) 19, 343
EarI CTCTTC 2 cut(s) 19, 343
EcoT22I ATGCAT 1 cut(s) 12
FaeI CATG 2 cut(s) 346, 486
FaiI YATR 9 cut(s) 12, 84, 290, 344, 365, 471, 473, 484, 499
FatI CATG 2 cut(s) 342, 482
Fnu4HI GCNGC 4 cut(s) 53, 487, 490, 493
Fsp4HI GCNGC 4 cut(s) 53, 487, 490, 493
FspBI CTAG 6 cut(s) 167, 171, 233, 303, 383, 410
GlaI GCGC 1 cut(s) 446
GluI GCNGC 4 cut(s) 53, 487, 490, 493
HaeIII GGCC 1 cut(s) 341
HhaI GCGC 1 cut(s) 447
Hin1II CATG 2 cut(s) 346, 486
Hin6I GCGC 1 cut(s) 445
HinP1I GCGC 1 cut(s) 445
HincII GTYRAC 1 cut(s) 317
HindII GTYRAC 1 cut(s) 317
HinfI GANTC 2 cut(s) 402, 413
Hpy166II GTNNAC 1 cut(s) 317
Hpy188I TCNGA 1 cut(s) 23
Hpy188III TCNNGA 3 cut(s) 157, 251, 410
Hpy8I GTNNAC 1 cut(s) 317
HpyAV CCTTC 2 cut(s) 384, 434
HpyCH4III ACNGT 2 cut(s) 314, 451
HpyCH4IV ACGT 1 cut(s) 319
HpyCH4V TGCA 5 cut(s) 10, 52, 67, 419, 486
HpyF10VI GCNNNNNNNGC 1 cut(s) 492
HpyF3I CTNAG 3 cut(s) 181, 202, 369
HpySE526I ACGT 1 cut(s) 319
Hsp92II CATG 2 cut(s) 346, 486
HspAI GCGC 1 cut(s) 445
Kzo9I GATC 2 cut(s) 175, 372
LguI GCTCTTC 1 cut(s) 343
LpnPI CCDG 1 cut(s) 451
Lsp1109I GCAGC 4 cut(s) 64, 479, 498, 501
LweI GCATC 2 cut(s) 64, 219
MaeI CTAG 6 cut(s) 167, 171, 233, 303, 383, 410
MaeII ACGT 1 cut(s) 319
MaeIII GTNAC 1 cut(s) 298
MalI GATC 2 cut(s) 177, 374
MboI GATC 2 cut(s) 175, 372
MboII GAAGA 3 cut(s) 36, 360, 454
MflI RGATCY 1 cut(s) 372
MluCI AATT 2 cut(s) 68, 206
MlyI GAGTC 1 cut(s) 396
MmeI TCCRAC 1 cut(s) 166
MnlI CCTC 2 cut(s) 386, 420
Mph1103I ATGCAT 1 cut(s) 12
MspA1I CMGCKG 1 cut(s) 492
MwoI GCNNNNNNNGC 1 cut(s) 492
NdeII GATC 2 cut(s) 175, 372
NlaIII CATG 2 cut(s) 346, 486
NmuCI GTSAC 1 cut(s) 298
NsiI ATGCAT 1 cut(s) 12
NspI RCATGY 1 cut(s) 486
PciSI GCTCTTC 1 cut(s) 343
PfeI GAWTC 1 cut(s) 413
PkrI GCNGC 4 cut(s) 54, 488, 491, 494
PleI GAGTC 1 cut(s) 396
PpsI GAGTC 1 cut(s) 396
PspPI GGNCC 1 cut(s) 339
PstNI CAGNNNCTG 1 cut(s) 492
PsuI RGATCY 1 cut(s) 372
PvuII CAGCTG 1 cut(s) 492
RsaI GTAC 2 cut(s) 240, 267
RsaNI GTAC 2 cut(s) 239, 266
SapI GCTCTTC 1 cut(s) 343
SatI GCNGC 4 cut(s) 53, 487, 490, 493
Sau3AI GATC 2 cut(s) 175, 372
Sau96I GGNCC 1 cut(s) 339
SchI GAGTC 1 cut(s) 396
SetI ASST 6 cut(s) 172, 267, 308, 322, 384, 494
SfaNI GCATC 2 cut(s) 64, 219
SmlI CTYRAG 2 cut(s) 251, 377
SmoI CTYRAG 2 cut(s) 251, 377
Sse9I AATT 2 cut(s) 68, 206
SspI AATATT 2 cut(s) 436, 477
SspMI CTAG 6 cut(s) 167, 171, 233, 303, 383, 410
TaaI ACNGT 2 cut(s) 314, 451
TaiI ACGT 1 cut(s) 322
TasI AATT 2 cut(s) 68, 206
TatI WGTACW 1 cut(s) 238
TfiI GAWTC 1 cut(s) 413
TscAI CASTG 1 cut(s) 360
TseFI GTSAC 1 cut(s) 298
TseI GCWGC 4 cut(s) 52, 486, 489, 492
Tsp45I GTSAC 1 cut(s) 298
TspRI CASTG 1 cut(s) 360
XapI RAATTY 1 cut(s) 206
XbaI TCTAGA 1 cut(s) 409
XceI RCATGY 1 cut(s) 486
XspI CTAG 6 cut(s) 167, 171, 233, 303, 383, 410
Zsp2I ATGCAT 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.