Rh6AG048400

ATPase 11, plasma

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000545
Physical Location & Seq
Forward (+)
7009702 .. 7010819
1118 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG048400.1

Sequence Viewer

Length: 423 bp
ATGGCGGACGAGAAGCCTGAAGTGCTTGACGCGGAAAACATACCCATTGAGGAGGTGCTTAAGAATATGAGATGTAGCAAAGAGGGTCTCAGCAGTGAGGCTGTTAAGGAAAGATTAGCCATTTTTGGGCATAACAAGCTTGAGGAAAAGCAGGGGAAGCCTCCTGACTGGCAAGATTTTGCGGTTATTATTACTCTGCTGGTCATCAACTCCACCATTAGTTTCATCAAGGAAAATAATGCGGGTAATGCTGCAGCAGCTCTCATGGCTCGTCTTGCTCCTAAAGCCAAGAATCTGATCCCCAAAAAGAGGGATGAATATTTACACAGATTGATGAGTCTCCCAAATCAGGTTAAATATGAATACCACTTTGCCTGGGGATATCGATTTGTTGCTTCAGAATGCGGCGGTTCTCATAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

140

Amino Acids

15.81

Weight (kDa)

7.77

Isoelectric Point (pI)

38.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cation_ATPase_N PF00690 13 - 54 4.5e-09 Cation transporter/ATPase, N-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000545)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36571
pyrus_communis pycom02g01560 pycom08g10820 pycom09g05820 pycom13g21850 pycom14g16010
rosa_chinensis RchiOBHm_Chr2g0094861 RchiOBHm_Chr2g0124911 RchiOBHm_Chr2g0138581 RchiOBHm_Chr2g0160851 RchiOBHm_Chr4g0407411
rosa_laevigata RLG00000001652 RLG00000001872 RLG00000002037 RLG00000003076 RLG00000006419 RLG00000016771 RLG00000017383 RLG00000022851 RLG00000030563 RLG00000033869 RLG00000034176
rosa_multiflora Rmu_co8013424.1_g000001 Rmu_co8016716.1_g000001 Rmu_co8183472.1_g000001 Rmu_co8254047.1_g000001 Rmu_co8354891.1_g000001 Rmu_sc0000124.1_g000003 Rmu_sc0002132.1_g000027 Rmu_sc0003007.1_g000011 Rmu_sc0003221.1_g000096 Rmu_sc0003221.1_g000097 Rmu_sc0005119.1_g000004 Rmu_sc0008057.1_g000005 Rmu_sc0034532.1_g000001 Rmu_sc0036406.1_g000001 Rmu_ssc0000008.1_g000009
rosa_roxburghii Rroxscaffold_1G00030520 Rroxscaffold_2G00107360 Rroxscaffold_2G00153420 Rroxscaffold_5G00335750 Rroxscaffold_5G00351760 Rroxscaffold_5G00352080 Rroxscaffold_6G00419090
rosa_rugosa Rorug01G0341800 Rorug01G0341900 Rorug02G0180200 Rorug02G0180300 Rorug03G0186100 Rorug03G0186200 Rorug03G0284800 Rorug04G0104500 Rorug05G0246300 Rorug06G0108400 Rorug06G0471500 Rorug06G0510400
rosa_samantha Rh1AG159000 Rh1CG148200 Rh1CG189900 Rh2AG552800 Rh2BG473900 Rh2BG612100 Rh2BG612300 Rh2DG094500 Rh2DG482600 Rh3BG234000 Rh3CG320000 Rh4AG144200 Rh4BG127900 Rh4DG097300 Rh5AG128900 Rh5AG381200 Rh5BG363000 Rh5DG491900 Rh6AG048400 Rh6BG168100 Rh6CG005800 Rh6DG006000 Rh7AG255100 Rh7BG360600 Rh7CG271700 Rh7CG482300 Rh7DG451200
rosa_wichuraiana Rw4G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 32
AciI CCGC 6 cut(s) 5, 32, 182, 242, 405, 408
AclWI GGATC 1 cut(s) 292
AcuI CTGAAG 2 cut(s) 39, 381
AfiI CCNNNNNNNGG 3 cut(s) 126, 309, 349
AflII CTTAAG 1 cut(s) 59
AjnI CCWGG 1 cut(s) 374
AluBI AGCT 2 cut(s) 139, 260
AluI AGCT 2 cut(s) 139, 260
Alw26I GTCTC 2 cut(s) 92, 344
AlwI GGATC 1 cut(s) 292
ApeKI GCWGC 3 cut(s) 251, 254, 257
BbvI GCAGC 3 cut(s) 238, 266, 269
BciT130I CCWGG 1 cut(s) 376
BcoDI GTCTC 2 cut(s) 92, 344
BfmI CTRYAG 1 cut(s) 252
BfrI CTTAAG 1 cut(s) 59
BisI GCNGC 4 cut(s) 252, 255, 258, 406
BlsI GCNGC 4 cut(s) 253, 256, 259, 407
Bme1390I CCNGG 1 cut(s) 376
BmrFI CCNGG 1 cut(s) 376
BpuEI CTTGAG 1 cut(s) 161
Bsa29I ATCGAT 1 cut(s) 385
BsaI GGTCTC 1 cut(s) 92
BsaJI CCNNGG 1 cut(s) 375
Bsc4I CCNNNNNNNGG 3 cut(s) 126, 309, 349
Bse1I ACTGG 1 cut(s) 173
BseBI CCWGG 1 cut(s) 376
BseCI ATCGAT 1 cut(s) 385
BseDI CCNNGG 1 cut(s) 375
BseGI GGATG 1 cut(s) 319
BseLI CCNNNNNNNGG 3 cut(s) 126, 309, 349
BseMII CTCAG 1 cut(s) 103
BseNI ACTGG 1 cut(s) 173
BseRI GAGGAG 1 cut(s) 65
BseXI GCAGC 3 cut(s) 238, 266, 269
Bsh1236I CGCG 1 cut(s) 32
BshVI ATCGAT 1 cut(s) 385
BslI CCNNNNNNNGG 3 cut(s) 126, 309, 349
BsmAI GTCTC 2 cut(s) 92, 344
BsmI GAATGC 1 cut(s) 407
Bso31I GGTCTC 1 cut(s) 92
Bsp143I GATC 1 cut(s) 297
BspACI CCGC 6 cut(s) 5, 32, 182, 242, 405, 408
BspCNI CTCAG 1 cut(s) 102
BspDI ATCGAT 1 cut(s) 385
BspFNI CGCG 1 cut(s) 32
BspMAI CTGCAG 1 cut(s) 256
BspPI GGATC 1 cut(s) 292
BspTI CTTAAG 1 cut(s) 59
BspTNI GGTCTC 1 cut(s) 92
BsrI ACTGG 1 cut(s) 173
BssECI CCNNGG 1 cut(s) 375
BssMI GATC 1 cut(s) 297
Bst2UI CCWGG 1 cut(s) 376
BstAFI CTTAAG 1 cut(s) 59
BstDEI CTNAG 1 cut(s) 89
BstF5I GGATG 1 cut(s) 319
BstFNI CGCG 1 cut(s) 32
BstKTI GATC 1 cut(s) 300
BstMAI GTCTC 2 cut(s) 92, 344
BstMBI GATC 1 cut(s) 297
BstMWI GCNNNNNNNGC 8 cut(s) 22, 136, 157, 248, 257, 266, 275, 284
BstNI CCWGG 1 cut(s) 376
BstSCI CCNGG 1 cut(s) 374
BstSFI CTRYAG 1 cut(s) 252
BstUI CGCG 1 cut(s) 32
BstV1I GCAGC 3 cut(s) 238, 266, 269
Bsu15I ATCGAT 1 cut(s) 385
BsuTUI ATCGAT 1 cut(s) 385
BtsCI GGATG 1 cut(s) 319
BtsI GCAGTG 1 cut(s) 100
BtsIMutI CAGTG 1 cut(s) 100
ClaI ATCGAT 1 cut(s) 385
CseI GACGC 1 cut(s) 38
CviAII CATG 1 cut(s) 265
CviJI RGCY 8 cut(s) 16, 101, 119, 139, 160, 260, 269, 287
CviKI_1 RGCY 8 cut(s) 16, 101, 119, 139, 160, 260, 269, 287
DdeI CTNAG 1 cut(s) 89
DpnI GATC 1 cut(s) 299
DpnII GATC 1 cut(s) 297
EciI GGCGGA 1 cut(s) 20
Eco31I GGTCTC 1 cut(s) 92
Eco32I GATATC 1 cut(s) 383
Eco57I CTGAAG 2 cut(s) 39, 381
EcoRII CCWGG 1 cut(s) 374
EcoRV GATATC 1 cut(s) 383
FaeI CATG 1 cut(s) 268
FaiI YATR 6 cut(s) 41, 68, 132, 266, 360, 417
FatI CATG 1 cut(s) 264
FauI CCCGC 1 cut(s) 235
Fnu4HI GCNGC 4 cut(s) 252, 255, 258, 406
FokI GGATG 1 cut(s) 326
Fsp4HI GCNGC 4 cut(s) 252, 255, 258, 406
GluI GCNGC 4 cut(s) 252, 255, 258, 406
HgaI GACGC 1 cut(s) 38
Hin1II CATG 1 cut(s) 268
HindIII AAGCTT 1 cut(s) 137
HinfI GANTC 2 cut(s) 292, 337
Hpy188I TCNGA 2 cut(s) 297, 400
Hpy188III TCNNGA 1 cut(s) 164
HpyCH4V TGCA 1 cut(s) 254
HpyF10VI GCNNNNNNNGC 8 cut(s) 22, 136, 157, 248, 257, 266, 275, 284
HpyF3I CTNAG 1 cut(s) 89
Hsp92II CATG 1 cut(s) 268
Kzo9I GATC 1 cut(s) 297
LmnI GCTCC 1 cut(s) 283
LpnPI CCDG 8 cut(s) 30, 137, 154, 177, 185, 335, 361, 388
Lsp1109I GCAGC 3 cut(s) 238, 266, 269
MalI GATC 1 cut(s) 299
MboI GATC 1 cut(s) 297
MlyI GAGTC 1 cut(s) 346
MnlI CCTC 7 cut(s) 43, 46, 76, 91, 136, 171, 303
MseI TTAA 3 cut(s) 60, 105, 354
MspCI CTTAAG 1 cut(s) 59
MspR9I CCNGG 1 cut(s) 376
Mva1269I GAATGC 1 cut(s) 407
MvaI CCWGG 1 cut(s) 376
MvnI CGCG 1 cut(s) 32
MwoI GCNNNNNNNGC 8 cut(s) 22, 136, 157, 248, 257, 266, 275, 284
NdeII GATC 1 cut(s) 297
NlaIII CATG 1 cut(s) 268
PctI GAATGC 1 cut(s) 407
PfeI GAWTC 1 cut(s) 292
PkrI GCNGC 4 cut(s) 253, 256, 259, 407
PleI GAGTC 1 cut(s) 345
PpsI GAGTC 1 cut(s) 345
Psp6I CCWGG 1 cut(s) 374
PspGI CCWGG 1 cut(s) 374
PstI CTGCAG 1 cut(s) 256
SaqAI TTAA 3 cut(s) 60, 105, 354
SatI GCNGC 4 cut(s) 252, 255, 258, 406
Sau3AI GATC 1 cut(s) 297
SchI GAGTC 1 cut(s) 346
ScrFI CCNGG 1 cut(s) 376
SetI ASST 4 cut(s) 57, 141, 262, 354
SfcI CTRYAG 1 cut(s) 252
SmlI CTYRAG 2 cut(s) 59, 140
SmoI CTYRAG 2 cut(s) 59, 140
SsiI CCGC 6 cut(s) 5, 32, 182, 242, 405, 408
SspI AATATT 1 cut(s) 320
StyD4I CCNGG 1 cut(s) 374
TaqI TCGA 1 cut(s) 385
TauI GCSGC 1 cut(s) 408
TfiI GAWTC 1 cut(s) 292
Tru1I TTAA 3 cut(s) 60, 105, 354
Tru9I TTAA 3 cut(s) 60, 105, 354
TscAI CASTG 1 cut(s) 100
TseI GCWGC 3 cut(s) 251, 254, 257
TspDTI ATGAA 3 cut(s) 214, 330, 375
TspRI CASTG 1 cut(s) 100
Vha464I CTTAAG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.