Rh1AG159000

Chromosome region maintenance protein 1 exportin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000545
Physical Location & Seq
Reverse (-)
30159104 .. 30162348
3245 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG159000.1

Sequence Viewer

Length: 489 bp
ATGTCCTTGTTCCAGCTTGGAATCAGTCCTCAAATTATAGCATCGATTATCATGCAGGTACTCTGTTATGTTGTCCCCTCCCTAGTAAAGCTGCAGAAAGAAGGCTTAGATGGTCAAGAGAAGATTAAGAGTTATATGTGTGTCTCGTTTTTATCTCAAGATGGGAAGCCTCCTGACTGGCAAGATTTTGCGGTTATTATTACTCTGCTGGTCATCAACTCCACCATTAGTTTCATCAAGGAAAATAATGTGGGTGATGCTGCAGCAGCTCTCACGGCTCGTCTTGCTCCTAAAGCCAAGAAATGGTCCGAGATCATTGGGCAAGCACGCCAAAGTGTCGAAGTTCTTAAAGATCAGGAAGTGATTCGAACTGTTCTTAATATATTACAGACAAACACAAGGGTTGCCAGCTCTCTTGGAACATTTCTCTTAACCCATATTTCATTGATCTTTTTCGACATGCTTAATGTCTACAGTCAATTTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000054 GO:0000055 GO:0000056 GO:0000122 GO:0000775 GO:0000776 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005049 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006355 GO:0006357 GO:0006403 GO:0006405 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0007275 GO:0008104 GO:0008150 GO:0009266 GO:0009408 GO:0009506 GO:0009553 GO:0009555 GO:0009628 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009889 GO:0009890 GO:0009892 GO:0009932 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0019904 GO:0022414 GO:0022613 GO:0030054 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031503 GO:0032386 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0032989 GO:0032991 GO:0033036 GO:0033157 GO:0033750 GO:0034613 GO:0040007 GO:0042221 GO:0042254 GO:0042493 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045184 GO:0045892 GO:0045934 GO:0046822 GO:0046825 GO:0046907 GO:0048229 GO:0048468 GO:0048519 GO:0048523 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051179 GO:0051223 GO:0051234 GO:0051236 GO:0051252 GO:0051253 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051704 GO:0055044 GO:0060255 GO:0060341 GO:0060560 GO:0065007 GO:0070201 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071705 GO:0071840 GO:0080090 GO:0090087 GO:0098687 GO:0140104 GO:0140142 GO:1902679 GO:1903506 GO:1903507 GO:1903827 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03008 ko03013 ko04013 ko05164 ko05166 ko05169 map03008 map03013 map04013 map05164 map05166 map05169
Pfam Domains
Protein Families
CRM1_C IBN_N Xpo1

Protein Analysis

162

Amino Acids

18.01

Weight (kDa)

7.76

Isoelectric Point (pI)

40.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SecY PF00344 2 - 46 6.9e-12 SecY
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000545)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36571
pyrus_communis pycom02g01560 pycom08g10820 pycom09g05820 pycom13g21850 pycom14g16010
rosa_chinensis RchiOBHm_Chr2g0094861 RchiOBHm_Chr2g0124911 RchiOBHm_Chr2g0138581 RchiOBHm_Chr2g0160851 RchiOBHm_Chr4g0407411
rosa_laevigata RLG00000001652 RLG00000001872 RLG00000002037 RLG00000003076 RLG00000006419 RLG00000016771 RLG00000017383 RLG00000022851 RLG00000030563 RLG00000033869 RLG00000034176
rosa_multiflora Rmu_co8013424.1_g000001 Rmu_co8016716.1_g000001 Rmu_co8183472.1_g000001 Rmu_co8254047.1_g000001 Rmu_co8354891.1_g000001 Rmu_sc0000124.1_g000003 Rmu_sc0002132.1_g000027 Rmu_sc0003007.1_g000011 Rmu_sc0003221.1_g000096 Rmu_sc0003221.1_g000097 Rmu_sc0005119.1_g000004 Rmu_sc0008057.1_g000005 Rmu_sc0034532.1_g000001 Rmu_sc0036406.1_g000001 Rmu_ssc0000008.1_g000009
rosa_roxburghii Rroxscaffold_1G00030520 Rroxscaffold_2G00107360 Rroxscaffold_2G00153420 Rroxscaffold_5G00335750 Rroxscaffold_5G00351760 Rroxscaffold_5G00352080 Rroxscaffold_6G00419090
rosa_rugosa Rorug01G0341800 Rorug01G0341900 Rorug02G0180200 Rorug02G0180300 Rorug03G0186100 Rorug03G0186200 Rorug03G0284800 Rorug04G0104500 Rorug05G0246300 Rorug06G0108400 Rorug06G0471500 Rorug06G0510400
rosa_samantha Rh1AG159000 Rh1CG148200 Rh1CG189900 Rh2AG552800 Rh2BG473900 Rh2BG612100 Rh2BG612300 Rh2DG094500 Rh2DG482600 Rh3BG234000 Rh3CG320000 Rh4AG144200 Rh4BG127900 Rh4DG097300 Rh5AG128900 Rh5AG381200 Rh5BG363000 Rh5DG491900 Rh6AG048400 Rh6BG168100 Rh6CG005800 Rh6DG006000 Rh7AG255100 Rh7BG360600 Rh7CG271700 Rh7CG482300 Rh7DG451200
rosa_wichuraiana Rw4G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 46
AccB7I CCANNNNNTGG 1 cut(s) 303
AccI GTMKAC 1 cut(s) 471
AciI CCGC 1 cut(s) 191
AfaI GTAC 1 cut(s) 60
AfiI CCNNNNNNNGG 1 cut(s) 303
AluBI AGCT 4 cut(s) 16, 91, 269, 411
AluI AGCT 4 cut(s) 16, 91, 269, 411
Alw26I GTCTC 1 cut(s) 148
ApeKI GCWGC 4 cut(s) 91, 260, 263, 266
Asp700I GAANNNNTTC 1 cut(s) 363
AspS9I GGNCC 1 cut(s) 306
AsuHPI GGTGA 1 cut(s) 266
AsuII TTCGAA 1 cut(s) 367
AvaII GGWCC 1 cut(s) 306
BbvI GCAGC 4 cut(s) 78, 247, 275, 278
BccI CCATC 2 cut(s) 104, 155
BceAI ACGGC 1 cut(s) 291
BcgI CGANNNNNNTGC 2 cut(s) 34, 68
BcoDI GTCTC 1 cut(s) 148
BfaI CTAG 1 cut(s) 83
BfmI CTRYAG 3 cut(s) 92, 261, 472
BfuAI ACCTGC 1 cut(s) 46
BisI GCNGC 4 cut(s) 92, 261, 264, 267
BlsI GCNGC 4 cut(s) 93, 262, 265, 268
Bme18I GGWCC 1 cut(s) 306
BmgT120I GGNCC 1 cut(s) 306
BmsI GCATC 2 cut(s) 50, 247
Bpu14I TTCGAA 1 cut(s) 367
BpuEI CTTGAG 1 cut(s) 141
Bsa29I ATCGAT 1 cut(s) 44
Bsc4I CCNNNNNNNGG 1 cut(s) 303
Bse1I ACTGG 1 cut(s) 182
BseCI ATCGAT 1 cut(s) 44
BseLI CCNNNNNNNGG 1 cut(s) 303
BseNI ACTGG 1 cut(s) 182
BseXI GCAGC 4 cut(s) 78, 247, 275, 278
BshVI ATCGAT 1 cut(s) 44
BslFI GGGAC 1 cut(s) 59
BslI CCNNNNNNNGG 1 cut(s) 303
BsmAI GTCTC 1 cut(s) 148
BsmFI GGGAC 1 cut(s) 59
Bsp119I TTCGAA 1 cut(s) 367
Bsp143I GATC 3 cut(s) 312, 352, 447
BspACI CCGC 1 cut(s) 191
BspDI ATCGAT 1 cut(s) 44
BspMAI CTGCAG 2 cut(s) 96, 265
BspMI ACCTGC 1 cut(s) 46
BspT104I TTCGAA 1 cut(s) 367
BsrI ACTGG 1 cut(s) 182
BssMI GATC 3 cut(s) 312, 352, 447
Bst4CI ACNGT 2 cut(s) 373, 476
BstBI TTCGAA 1 cut(s) 367
BstC8I GCNNGC 3 cut(s) 324, 328, 409
BstDEI CTNAG 1 cut(s) 106
BstKTI GATC 3 cut(s) 315, 355, 450
BstMAI GTCTC 1 cut(s) 148
BstMBI GATC 3 cut(s) 312, 352, 447
BstMWI GCNNNNNNNGC 4 cut(s) 266, 275, 284, 293
BstNSI RCATGY 1 cut(s) 463
BstSFI CTRYAG 3 cut(s) 92, 261, 472
BstV1I GCAGC 4 cut(s) 78, 247, 275, 278
Bsu15I ATCGAT 1 cut(s) 44
BsuTUI ATCGAT 1 cut(s) 44
BtsIMutI CAGTG 1 cut(s) 484
BveI ACCTGC 1 cut(s) 46
Cac8I GCNNGC 3 cut(s) 324, 328, 409
Cfr13I GGNCC 1 cut(s) 306
ClaI ATCGAT 1 cut(s) 44
Csp6I GTAC 1 cut(s) 59
CviAII CATG 2 cut(s) 52, 460
CviJI RGCY 8 cut(s) 16, 91, 105, 169, 269, 278, 296, 411
CviKI_1 RGCY 8 cut(s) 16, 91, 105, 169, 269, 278, 296, 411
CviQI GTAC 1 cut(s) 59
DdeI CTNAG 1 cut(s) 106
DpnI GATC 3 cut(s) 314, 354, 449
DpnII GATC 3 cut(s) 312, 352, 447
Eco47I GGWCC 1 cut(s) 306
FaeI CATG 2 cut(s) 55, 463
FaiI YATR 8 cut(s) 38, 53, 69, 135, 137, 383, 438, 461
FaqI GGGAC 1 cut(s) 59
FatI CATG 2 cut(s) 51, 459
FblI GTMKAC 1 cut(s) 471
Fnu4HI GCNGC 4 cut(s) 92, 261, 264, 267
Fsp4HI GCNGC 4 cut(s) 92, 261, 264, 267
FspBI CTAG 1 cut(s) 83
GluI GCNGC 4 cut(s) 92, 261, 264, 267
Hin1II CATG 2 cut(s) 55, 463
HinfI GANTC 2 cut(s) 21, 364
HphI GGTGA 1 cut(s) 266
Hpy166II GTNNAC 1 cut(s) 472
Hpy188I TCNGA 1 cut(s) 310
Hpy188III TCNNGA 4 cut(s) 116, 158, 173, 356
Hpy8I GTNNAC 1 cut(s) 472
HpyAV CCTTC 1 cut(s) 95
HpyCH4III ACNGT 2 cut(s) 373, 476
HpyCH4V TGCA 3 cut(s) 55, 94, 263
HpyF10VI GCNNNNNNNGC 4 cut(s) 266, 275, 284, 293
HpyF3I CTNAG 1 cut(s) 106
Hsp92II CATG 2 cut(s) 55, 463
Kzo9I GATC 3 cut(s) 312, 352, 447
LmnI GCTCC 1 cut(s) 292
LpnPI CCDG 7 cut(s) 26, 41, 163, 186, 194, 341, 421
Lsp1109I GCAGC 4 cut(s) 78, 247, 275, 278
LweI GCATC 2 cut(s) 50, 247
MaeI CTAG 1 cut(s) 83
MalI GATC 3 cut(s) 314, 354, 449
MboI GATC 3 cut(s) 312, 352, 447
MboII GAAGA 1 cut(s) 133
MluCI AATT 2 cut(s) 33, 479
MnlI CCTC 3 cut(s) 39, 88, 180
MroXI GAANNNNTTC 1 cut(s) 363
MseI TTAA 5 cut(s) 126, 348, 378, 431, 465
MwoI GCNNNNNNNGC 4 cut(s) 266, 275, 284, 293
NdeII GATC 3 cut(s) 312, 352, 447
NlaIII CATG 2 cut(s) 55, 463
NspI RCATGY 1 cut(s) 463
NspV TTCGAA 1 cut(s) 367
PdmI GAANNNNTTC 1 cut(s) 363
PfeI GAWTC 2 cut(s) 21, 364
PflMI CCANNNNNTGG 1 cut(s) 303
PkrI GCNGC 4 cut(s) 93, 262, 265, 268
PspPI GGNCC 1 cut(s) 306
PstI CTGCAG 2 cut(s) 96, 265
RsaI GTAC 1 cut(s) 60
RsaNI GTAC 1 cut(s) 59
SaqAI TTAA 5 cut(s) 126, 348, 378, 431, 465
SatI GCNGC 4 cut(s) 92, 261, 264, 267
Sau3AI GATC 3 cut(s) 312, 352, 447
Sau96I GGNCC 1 cut(s) 306
SetI ASST 5 cut(s) 18, 60, 93, 271, 413
SfaNI GCATC 2 cut(s) 50, 247
SfcI CTRYAG 3 cut(s) 92, 261, 472
SfuI TTCGAA 1 cut(s) 367
SinI GGWCC 1 cut(s) 306
SmlI CTYRAG 1 cut(s) 156
SmoI CTYRAG 1 cut(s) 156
Sse9I AATT 2 cut(s) 33, 479
SsiI CCGC 1 cut(s) 191
SspMI CTAG 1 cut(s) 83
TaaI ACNGT 2 cut(s) 373, 476
TaqI TCGA 4 cut(s) 44, 339, 367, 456
TasI AATT 2 cut(s) 33, 479
TfiI GAWTC 2 cut(s) 21, 364
Tru1I TTAA 5 cut(s) 126, 348, 378, 431, 465
Tru9I TTAA 5 cut(s) 126, 348, 378, 431, 465
TseI GCWGC 4 cut(s) 91, 260, 263, 266
TspDTI ATGAA 2 cut(s) 223, 432
Van91I CCANNNNNTGG 1 cut(s) 303
VpaK11BI GGWCC 1 cut(s) 306
XceI RCATGY 1 cut(s) 463
XmiI GTMKAC 1 cut(s) 471
XmnI GAANNNNTTC 1 cut(s) 363
XspI CTAG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.