Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0000545

Physical Location & Seq

Genomic Coordinates Forward (+)

21457940 .. 21466007

Gene Structure 8068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG127900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGCCACCATACAAAGATGAGGCTGCTGAGGAAAGATTAGCCATTTTTGGGCATAACAAGCTTGAGGAAAAGCAGGGGAAGCCTCCTGACTGGCAAGATTTTGCGGTTATTATTACTCTGCTGATCATCAACTCCACCATTAGTTTCATTAAGGAAAATAATCCGGGTAATGCTGCAGCAGCTCTCATGGCTCGTCTTGCTCCTAAAGCCAAGAAATGGTCCGAGATCATTGGGCAAGCACGCCAAAGTGTCGAAGTTCTTAAAGATCAGGAAGGTCAACCACCGGTCGTCGGGACTGAGGTCACTGGGAGCAGCATTGGCACTACTACTGCTGATACCCCTGCATCTAGTGCCACGGTGTTGAACAAAGGCTTAAAATTGGGCATTGACCCAAAAAACAGTCCTACAAAAGCAGGTAAACTGAAATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006970 GO:0008150 GO:0008324 GO:0008553 GO:0009628 GO:0009651 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0015672 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0034220 GO:0036442 GO:0042623 GO:0042625 GO:0042626 GO:0043492 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

143

Amino Acids

15.31

Weight (kDa)

8.8

Isoelectric Point (pI)

37.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000545)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g36571
pyrus_communis	pycom02g01560 pycom08g10820 pycom09g05820 pycom13g21850 pycom14g16010
rosa_chinensis	RchiOBHm_Chr2g0094861 RchiOBHm_Chr2g0124911 RchiOBHm_Chr2g0138581 RchiOBHm_Chr2g0160851 RchiOBHm_Chr4g0407411
rosa_laevigata	RLG00000001652 RLG00000001872 RLG00000002037 RLG00000003076 RLG00000006419 RLG00000016771 RLG00000017383 RLG00000022851 RLG00000030563 RLG00000033869 RLG00000034176
rosa_multiflora	Rmu_co8013424.1_g000001 Rmu_co8016716.1_g000001 Rmu_co8183472.1_g000001 Rmu_co8254047.1_g000001 Rmu_co8354891.1_g000001 Rmu_sc0000124.1_g000003 Rmu_sc0002132.1_g000027 Rmu_sc0003007.1_g000011 Rmu_sc0003221.1_g000096 Rmu_sc0003221.1_g000097 Rmu_sc0005119.1_g000004 Rmu_sc0008057.1_g000005 Rmu_sc0034532.1_g000001 Rmu_sc0036406.1_g000001 Rmu_ssc0000008.1_g000009
rosa_roxburghii	Rroxscaffold_1G00030520 Rroxscaffold_2G00107360 Rroxscaffold_2G00153420 Rroxscaffold_5G00335750 Rroxscaffold_5G00351760 Rroxscaffold_5G00352080 Rroxscaffold_6G00419090
rosa_rugosa	Rorug01G0341800 Rorug01G0341900 Rorug02G0180200 Rorug02G0180300 Rorug03G0186100 Rorug03G0186200 Rorug03G0284800 Rorug04G0104500 Rorug05G0246300 Rorug06G0108400 Rorug06G0471500 Rorug06G0510400
rosa_samantha	Rh1AG159000 Rh1CG148200 Rh1CG189900 Rh2AG552800 Rh2BG473900 Rh2BG612100 Rh2BG612300 Rh2DG094500 Rh2DG482600 Rh3BG234000 Rh3CG320000 Rh4AG144200 Rh4BG127900 Rh4DG097300 Rh5AG128900 Rh5AG381200 Rh5BG363000 Rh5DG491900 Rh6AG048400 Rh6BG168100 Rh6CG005800 Rh6DG006000 Rh7AG255100 Rh7BG360600 Rh7CG271700 Rh7CG482300 Rh7DG451200
rosa_wichuraiana	Rw4G004970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	404
AccB7I	CCANNNNNTGG	1 cut(s)	216
AciI	CCGC	1 cut(s)	104
AfiI	CCNNNNNNNGG	3 cut(s)	48, 216, 290
AgeI	ACCGGT	1 cut(s)	283
AgsI	TTSAA	1 cut(s)	364
AluBI	AGCT	2 cut(s)	61, 182
AluI	AGCT	2 cut(s)	61, 182
ApeKI	GCWGC	5 cut(s)	23, 173, 176, 179, 312
AsiGI	ACCGGT	1 cut(s)	283
AspS9I	GGNCC	1 cut(s)	219
AsuC2I	CCSGG	1 cut(s)	165
AvaII	GGWCC	1 cut(s)	219
BbvCI	CCTCAGC	1 cut(s)	27
BbvI	GCAGC	5 cut(s)	10, 160, 188, 191, 324
BclI	TGATCA	1 cut(s)	123
BcnI	CCSGG	1 cut(s)	165
BfaI	CTAG	1 cut(s)	348
BfmI	CTRYAG	1 cut(s)	174
BfuAI	ACCTGC	1 cut(s)	404
BisI	GCNGC	5 cut(s)	24, 174, 177, 180, 313
BlsI	GCNGC	5 cut(s)	25, 175, 178, 181, 314
Bme1390I	CCNGG	1 cut(s)	165
Bme18I	GGWCC	1 cut(s)	219
BmgT120I	GGNCC	1 cut(s)	219
BmrFI	CCNGG	1 cut(s)	165
BmrI	ACTGGG	1 cut(s)	315
BmsI	GCATC	1 cut(s)	353
BmuI	ACTGGG	1 cut(s)	315
BoxI	GACNNNNGTC	1 cut(s)	299
Bpu10I	CCTNAGC	1 cut(s)	27
BpuEI	CTTGAG	1 cut(s)	83
BpuMI	CCSGG	1 cut(s)	165
BsaJI	CCNNGG	1 cut(s)	354
BsaWI	WCCGGW	1 cut(s)	283
Bsc4I	CCNNNNNNNGG	3 cut(s)	48, 216, 290
Bse118I	RCCGGY	1 cut(s)	283
Bse1I	ACTGG	2 cut(s)	95, 310
BseDI	CCNNGG	1 cut(s)	354
BseLI	CCNNNNNNNGG	3 cut(s)	48, 216, 290
BseMII	CTCAG	2 cut(s)	18, 288
BseNI	ACTGG	2 cut(s)	95, 310
BseXI	GCAGC	5 cut(s)	10, 160, 188, 191, 324
Bsh1285I	CGRYCG	1 cut(s)	288
BshTI	ACCGGT	1 cut(s)	283
BsiEI	CGRYCG	1 cut(s)	288
BsiSI	CCGG	2 cut(s)	164, 284
BslFI	GGGAC	1 cut(s)	307
BslI	CCNNNNNNNGG	3 cut(s)	48, 216, 290
BsmFI	GGGAC	1 cut(s)	307
Bsp143I	GATC	3 cut(s)	123, 225, 265
BspACI	CCGC	1 cut(s)	104
BspCNI	CTCAG	2 cut(s)	19, 289
BspMAI	CTGCAG	1 cut(s)	178
BspMI	ACCTGC	1 cut(s)	404
BsrFI	RCCGGY	1 cut(s)	283
BsrI	ACTGG	2 cut(s)	95, 310
BssAI	RCCGGY	1 cut(s)	283
BssECI	CCNNGG	1 cut(s)	354
BssMI	GATC	3 cut(s)	123, 225, 265
Bst4CI	ACNGT	2 cut(s)	358, 401
BstAPI	GCANNNNNTGC	1 cut(s)	350
BstC8I	GCNNGC	2 cut(s)	237, 241
BstDEI	CTNAG	2 cut(s)	27, 297
BstDSI	CCRYGG	1 cut(s)	354
BstKTI	GATC	3 cut(s)	126, 228, 268
BstMBI	GATC	3 cut(s)	123, 225, 265
BstMCI	CGRYCG	1 cut(s)	288
BstMWI	GCNNNNNNNGC	8 cut(s)	58, 79, 179, 188, 197, 206, 318, 350
BstPAI	GACNNNNGTC	1 cut(s)	299
BstSCI	CCNGG	1 cut(s)	163
BstSFI	CTRYAG	1 cut(s)	174
BstV1I	GCAGC	5 cut(s)	10, 160, 188, 191, 324
BtgI	CCRYGG	1 cut(s)	354
BtsIMutI	CAGTG	1 cut(s)	303
BveI	ACCTGC	1 cut(s)	404
Cac8I	GCNNGC	2 cut(s)	237, 241
Cfr10I	RCCGGY	1 cut(s)	283
Cfr13I	GGNCC	1 cut(s)	219
CspAI	ACCGGT	1 cut(s)	283
CviAII	CATG	1 cut(s)	187
CviJI	RGCY	8 cut(s)	23, 41, 61, 82, 182, 191, 209, 372
CviKI_1	RGCY	8 cut(s)	23, 41, 61, 82, 182, 191, 209, 372
DdeI	CTNAG	2 cut(s)	27, 297
DpnI	GATC	3 cut(s)	125, 227, 267
DpnII	GATC	3 cut(s)	123, 225, 265
Eco47I	GGWCC	1 cut(s)	219
FaeI	CATG	1 cut(s)	190
FaiI	YATR	3 cut(s)	10, 54, 188
FaqI	GGGAC	1 cut(s)	307
FatI	CATG	1 cut(s)	186
FbaI	TGATCA	1 cut(s)	123
Fnu4HI	GCNGC	5 cut(s)	24, 174, 177, 180, 313
Fsp4HI	GCNGC	5 cut(s)	24, 174, 177, 180, 313
FspBI	CTAG	1 cut(s)	348
GluI	GCNGC	5 cut(s)	24, 174, 177, 180, 313
HapII	CCGG	2 cut(s)	164, 284
Hin1II	CATG	1 cut(s)	190
HincII	GTYRAC	1 cut(s)	278
HindII	GTYRAC	1 cut(s)	278
HindIII	AAGCTT	1 cut(s)	59
HpaII	CCGG	2 cut(s)	164, 284
Hpy166II	GTNNAC	2 cut(s)	278, 419
Hpy188I	TCNGA	1 cut(s)	223
Hpy188III	TCNNGA	3 cut(s)	86, 269, 292
Hpy8I	GTNNAC	2 cut(s)	278, 419
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	1 cut(s)	266
HpyCH4III	ACNGT	2 cut(s)	358, 401
HpyCH4V	TGCA	2 cut(s)	176, 344
HpyF10VI	GCNNNNNNNGC	8 cut(s)	58, 79, 179, 188, 197, 206, 318, 350
HpyF3I	CTNAG	2 cut(s)	27, 297
Hsp92II	CATG	1 cut(s)	190
Ksp22I	TGATCA	1 cut(s)	123
Kzo9I	GATC	3 cut(s)	123, 225, 265
LmnI	GCTCC	2 cut(s)	205, 309
LpnPI	CCDG	9 cut(s)	59, 76, 99, 177, 254, 291, 297, 354, 399
Lsp1109I	GCAGC	5 cut(s)	10, 160, 188, 191, 324
LweI	GCATC	1 cut(s)	353
MaeI	CTAG	1 cut(s)	348
MaeIII	GTNAC	1 cut(s)	301
MalI	GATC	3 cut(s)	125, 227, 267
MboI	GATC	3 cut(s)	123, 225, 265
MluCI	AATT	1 cut(s)	377
MnlI	CCTC	5 cut(s)	13, 22, 58, 93, 292
MseI	TTAA	4 cut(s)	150, 261, 374, 430
MspI	CCGG	2 cut(s)	164, 284
MspR9I	CCNGG	1 cut(s)	165
MwoI	GCNNNNNNNGC	8 cut(s)	58, 79, 179, 188, 197, 206, 318, 350
NciI	CCSGG	1 cut(s)	165
NdeII	GATC	3 cut(s)	123, 225, 265
NlaIII	CATG	1 cut(s)	190
NmuCI	GTSAC	1 cut(s)	301
PflMI	CCANNNNNTGG	1 cut(s)	216
PinAI	ACCGGT	1 cut(s)	283
PkrI	GCNGC	5 cut(s)	25, 175, 178, 181, 314
PshAI	GACNNNNGTC	1 cut(s)	299
PspPI	GGNCC	1 cut(s)	219
PstI	CTGCAG	1 cut(s)	178
SaqAI	TTAA	4 cut(s)	150, 261, 374, 430
SatI	GCNGC	5 cut(s)	24, 174, 177, 180, 313
Sau3AI	GATC	3 cut(s)	123, 225, 265
Sau96I	GGNCC	1 cut(s)	219
ScrFI	CCNGG	1 cut(s)	165
SetI	ASST	5 cut(s)	63, 184, 277, 303, 418
SfaNI	GCATC	1 cut(s)	353
SfcI	CTRYAG	1 cut(s)	174
SinI	GGWCC	1 cut(s)	219
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
Sse9I	AATT	1 cut(s)	377
SsiI	CCGC	1 cut(s)	104
SspI	AATATT	1 cut(s)	428
SspMI	CTAG	1 cut(s)	348
StyD4I	CCNGG	1 cut(s)	163
TaaI	ACNGT	2 cut(s)	358, 401
TaqI	TCGA	1 cut(s)	252
TasI	AATT	1 cut(s)	377
Tru1I	TTAA	4 cut(s)	150, 261, 374, 430
Tru9I	TTAA	4 cut(s)	150, 261, 374, 430
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	1 cut(s)	301
TseI	GCWGC	5 cut(s)	23, 173, 176, 179, 312
Tsp45I	GTSAC	1 cut(s)	301
TspDTI	ATGAA	1 cut(s)	136
TspRI	CASTG	1 cut(s)	310
Van91I	CCANNNNNTGG	1 cut(s)	216
VpaK11BI	GGWCC	1 cut(s)	219
XspI	CTAG	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.