Rmu_co8016716.1_g000001

Plasma membrane ATPase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8016716.1
OG0000545
Physical Location & Seq
Reverse (-)
36 .. 537
502 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8016716.1_g000001.1.cds

Sequence Viewer

Length: 401 bp
aggaacggattccaattgaggaagtctttgagcagttgaaatgtacaagggaaggtcttacctccgaggagggtcagaacaggctccaagtctttggaccaaacaagttagaggagaaaaaggaaaacaagctactgaagtttttggggttcatgtggaatcccttgtcatgggtcatggaagctgctgctgtgatggctattgccctggcaaatggtggtggaaggcctccggattggcaggattttgtaggaattatggtcctgctggtcgttaactctaccatcagttttattgaggaaaacaatgctggtaatgcggctgctgcacttatggctggtcttgctcctaagactaaggtgaagaatgaaagtgatgaacttcattgtttatgtgtttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

132

Amino Acids

14.56

Weight (kDa)

4.94

Isoelectric Point (pI)

41.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000545)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36571
pyrus_communis pycom02g01560 pycom08g10820 pycom09g05820 pycom13g21850 pycom14g16010
rosa_chinensis RchiOBHm_Chr2g0094861 RchiOBHm_Chr2g0124911 RchiOBHm_Chr2g0138581 RchiOBHm_Chr2g0160851 RchiOBHm_Chr4g0407411
rosa_laevigata RLG00000001652 RLG00000001872 RLG00000002037 RLG00000003076 RLG00000006419 RLG00000016771 RLG00000017383 RLG00000022851 RLG00000030563 RLG00000033869 RLG00000034176
rosa_multiflora Rmu_co8013424.1_g000001 Rmu_co8016716.1_g000001 Rmu_co8183472.1_g000001 Rmu_co8254047.1_g000001 Rmu_co8354891.1_g000001 Rmu_sc0000124.1_g000003 Rmu_sc0002132.1_g000027 Rmu_sc0003007.1_g000011 Rmu_sc0003221.1_g000096 Rmu_sc0003221.1_g000097 Rmu_sc0005119.1_g000004 Rmu_sc0008057.1_g000005 Rmu_sc0034532.1_g000001 Rmu_sc0036406.1_g000001 Rmu_ssc0000008.1_g000009
rosa_roxburghii Rroxscaffold_1G00030520 Rroxscaffold_2G00107360 Rroxscaffold_2G00153420 Rroxscaffold_5G00335750 Rroxscaffold_5G00351760 Rroxscaffold_5G00352080 Rroxscaffold_6G00419090
rosa_rugosa Rorug01G0341800 Rorug01G0341900 Rorug02G0180200 Rorug02G0180300 Rorug03G0186100 Rorug03G0186200 Rorug03G0284800 Rorug04G0104500 Rorug05G0246300 Rorug06G0108400 Rorug06G0471500 Rorug06G0510400
rosa_samantha Rh1AG159000 Rh1CG148200 Rh1CG189900 Rh2AG552800 Rh2BG473900 Rh2BG612100 Rh2BG612300 Rh2DG094500 Rh2DG482600 Rh3BG234000 Rh3CG320000 Rh4AG144200 Rh4BG127900 Rh4DG097300 Rh5AG128900 Rh5AG381200 Rh5BG363000 Rh5DG491900 Rh6AG048400 Rh6BG168100 Rh6CG005800 Rh6DG006000 Rh7AG255100 Rh7BG360600 Rh7CG271700 Rh7CG482300 Rh7DG451200
rosa_wichuraiana Rw4G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 231
AciI CCGC 1 cut(s) 319
AcuI CTGAAG 1 cut(s) 157
AfaI GTAC 1 cut(s) 45
AfiI CCNNNNNNNGG 1 cut(s) 170
AgsI TTSAA 1 cut(s) 39
AjnI CCWGG 1 cut(s) 206
AluBI AGCT 2 cut(s) 132, 184
AluI AGCT 2 cut(s) 132, 184
Aor13HI TCCGGA 1 cut(s) 231
AoxI GGCC 1 cut(s) 226
ApeKI GCWGC 4 cut(s) 184, 187, 322, 325
Asp700I GAANNNNTTC 1 cut(s) 8
AspS9I GGNCC 2 cut(s) 97, 261
AsuHPI GGTGA 1 cut(s) 372
AvaII GGWCC 2 cut(s) 97, 261
BbvI GCAGC 4 cut(s) 171, 174, 309, 312
BccI CCATC 2 cut(s) 189, 292
BciT130I CCWGG 1 cut(s) 208
BisI GCNGC 5 cut(s) 185, 188, 320, 323, 326
BlsI GCNGC 5 cut(s) 186, 189, 321, 324, 327
Bme1390I CCNGG 1 cut(s) 208
Bme18I GGWCC 2 cut(s) 97, 261
BmgT120I GGNCC 2 cut(s) 97, 261
BmiI GGNNCC 1 cut(s) 85
BmrFI CCNGG 1 cut(s) 208
BsaJI CCNNGG 2 cut(s) 65, 206
BsaWI WCCGGW 1 cut(s) 231
Bsc4I CCNNNNNNNGG 1 cut(s) 170
BseAI TCCGGA 1 cut(s) 231
BseBI CCWGG 1 cut(s) 208
BseDI CCNNGG 2 cut(s) 65, 206
BseLI CCNNNNNNNGG 1 cut(s) 170
BseRI GAGGAG 2 cut(s) 82, 127
BseXI GCAGC 4 cut(s) 171, 174, 309, 312
BsgI GTGCAG 1 cut(s) 311
BshFI GGCC 1 cut(s) 228
BsiSI CCGG 1 cut(s) 232
BslI CCNNNNNNNGG 1 cut(s) 170
BsnI GGCC 1 cut(s) 228
Bsp13I TCCGGA 1 cut(s) 231
Bsp1407I TGTACA 1 cut(s) 43
BspACI CCGC 1 cut(s) 319
BspANI GGCC 1 cut(s) 228
BspEI TCCGGA 1 cut(s) 231
BspLI GGNNCC 1 cut(s) 85
BsrGI TGTACA 1 cut(s) 43
BssECI CCNNGG 2 cut(s) 65, 206
Bst2UI CCWGG 1 cut(s) 208
BstAUI TGTACA 1 cut(s) 43
BstDEI CTNAG 2 cut(s) 350, 356
BstMWI GCNNNNNNNGC 5 cut(s) 196, 316, 325, 334, 343
BstNI CCWGG 1 cut(s) 208
BstSCI CCNGG 1 cut(s) 206
BstV1I GCAGC 4 cut(s) 171, 174, 309, 312
BstXI CCANNNNNNTGG 1 cut(s) 94
BsuRI GGCC 1 cut(s) 228
Cfr13I GGNCC 2 cut(s) 97, 261
Csp6I GTAC 1 cut(s) 44
CviAII CATG 3 cut(s) 153, 170, 177
CviJI RGCY 7 cut(s) 84, 132, 184, 199, 228, 322, 337
CviKI_1 RGCY 7 cut(s) 84, 132, 184, 199, 228, 322, 337
CviQI GTAC 1 cut(s) 44
DdeI CTNAG 2 cut(s) 350, 356
Eco147I AGGCCT 1 cut(s) 228
Eco47I GGWCC 2 cut(s) 97, 261
Eco57I CTGAAG 1 cut(s) 157
EcoRII CCWGG 1 cut(s) 206
FaeI CATG 3 cut(s) 156, 173, 180
FaiI YATR 6 cut(s) 154, 171, 178, 259, 334, 393
FatI CATG 3 cut(s) 152, 169, 176
Fnu4HI GCNGC 5 cut(s) 185, 188, 320, 323, 326
Fsp4HI GCNGC 5 cut(s) 185, 188, 320, 323, 326
GluI GCNGC 5 cut(s) 185, 188, 320, 323, 326
HaeIII GGCC 1 cut(s) 228
HapII CCGG 1 cut(s) 232
Hin1II CATG 3 cut(s) 156, 173, 180
HincII GTYRAC 1 cut(s) 276
HindII GTYRAC 1 cut(s) 276
HinfI GANTC 2 cut(s) 9, 159
HpaI GTTAAC 1 cut(s) 276
HpaII CCGG 1 cut(s) 232
HphI GGTGA 1 cut(s) 372
Hpy166II GTNNAC 1 cut(s) 276
Hpy188I TCNGA 2 cut(s) 66, 77
Hpy188III TCNNGA 1 cut(s) 232
Hpy8I GTNNAC 1 cut(s) 276
HpyAV CCTTC 2 cut(s) 46, 218
HpyCH4V TGCA 1 cut(s) 328
HpyF10VI GCNNNNNNNGC 5 cut(s) 196, 316, 325, 334, 343
HpyF3I CTNAG 2 cut(s) 350, 356
Hsp92II CATG 3 cut(s) 156, 173, 180
Kpn2I TCCGGA 1 cut(s) 231
KspAI GTTAAC 1 cut(s) 276
LmnI GCTCC 2 cut(s) 89, 351
LpnPI CCDG 9 cut(s) 66, 193, 220, 226, 245, 253, 277, 296, 323
Lsp1109I GCAGC 4 cut(s) 171, 174, 309, 312
MboII GAAGA 1 cut(s) 375
MfeI CAATTG 1 cut(s) 14
MluCI AATT 2 cut(s) 14, 254
MnlI CCTC 7 cut(s) 12, 60, 63, 72, 105, 239, 291
MroI TCCGGA 1 cut(s) 231
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 2 cut(s) 275, 399
MspI CCGG 1 cut(s) 232
MspR9I CCNGG 1 cut(s) 208
MunI CAATTG 1 cut(s) 14
MvaI CCWGG 1 cut(s) 208
MwoI GCNNNNNNNGC 5 cut(s) 196, 316, 325, 334, 343
NlaIII CATG 3 cut(s) 156, 173, 180
NlaIV GGNNCC 1 cut(s) 85
PceI AGGCCT 1 cut(s) 228
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 2 cut(s) 9, 159
PkrI GCNGC 5 cut(s) 186, 189, 321, 324, 327
Psp6I CCWGG 1 cut(s) 206
PspGI CCWGG 1 cut(s) 206
PspN4I GGNNCC 1 cut(s) 85
PspPI GGNCC 2 cut(s) 97, 261
RsaI GTAC 1 cut(s) 45
RsaNI GTAC 1 cut(s) 44
SaqAI TTAA 2 cut(s) 275, 399
SatI GCNGC 5 cut(s) 185, 188, 320, 323, 326
Sau96I GGNCC 2 cut(s) 97, 261
ScrFI CCNGG 1 cut(s) 208
SetI ASST 5 cut(s) 57, 64, 134, 186, 362
SinI GGWCC 2 cut(s) 97, 261
Sse9I AATT 2 cut(s) 14, 254
SseBI AGGCCT 1 cut(s) 228
SsiI CCGC 1 cut(s) 319
StuI AGGCCT 1 cut(s) 228
StyD4I CCNGG 1 cut(s) 206
TasI AATT 2 cut(s) 14, 254
TatI WGTACW 1 cut(s) 43
TauI GCSGC 1 cut(s) 322
TfiI GAWTC 2 cut(s) 9, 159
Tru1I TTAA 2 cut(s) 275, 399
Tru9I TTAA 2 cut(s) 275, 399
TseI GCWGC 4 cut(s) 184, 187, 322, 325
TspDTI ATGAA 4 cut(s) 141, 373, 383, 392
TspGWI ACGGA 1 cut(s) 21
VpaK11BI GGWCC 2 cut(s) 97, 261
XmnI GAANNNNTTC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.