RchiOBHm_Chr2g0138581

Plasma membrane ATPase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000545
Physical Location & Seq
Reverse (-)
56296687 .. 56297163
477 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50924

Sequence Viewer

Length: 348 bp
ATGAAATTTTTAATAATAAATCCCAATTCTTGGATTGGGAGGTGGATTGAGGAGGATGCTTCTGTTCTTGTTCCTGTTGATATAAATCATATAATCAACATTAAGCTTGGGGATATTATTCCAGCACATGCTTGTCTCCTCAACGGTGATCCACTGAAAATTGATCAGTCTGCTCTTGCCGGTGAATCACTTTCTGTGACCAAAGGCCCTGGTGACATTGTGTATTTGGGCTCTACATGCAAACAAGGAGAAATTGAAGCTGTGGTGATTGCCACTGGTGTTCATACCTTTTTCGGCAAGGCTGCTCATCTTGTCGATAACACAAATCAACAGGGCCACTTTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

115

Amino Acids

12.37

Weight (kDa)

5.33

Isoelectric Point (pI)

38.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
E1-E2_ATPase PF00122 26 - 105 2.1e-17 P-type ATPase actuator domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000545)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36571
pyrus_communis pycom02g01560 pycom08g10820 pycom09g05820 pycom13g21850 pycom14g16010
rosa_chinensis RchiOBHm_Chr2g0094861 RchiOBHm_Chr2g0124911 RchiOBHm_Chr2g0138581 RchiOBHm_Chr2g0160851 RchiOBHm_Chr4g0407411
rosa_laevigata RLG00000001652 RLG00000001872 RLG00000002037 RLG00000003076 RLG00000006419 RLG00000016771 RLG00000017383 RLG00000022851 RLG00000030563 RLG00000033869 RLG00000034176
rosa_multiflora Rmu_co8013424.1_g000001 Rmu_co8016716.1_g000001 Rmu_co8183472.1_g000001 Rmu_co8254047.1_g000001 Rmu_co8354891.1_g000001 Rmu_sc0000124.1_g000003 Rmu_sc0002132.1_g000027 Rmu_sc0003007.1_g000011 Rmu_sc0003221.1_g000096 Rmu_sc0003221.1_g000097 Rmu_sc0005119.1_g000004 Rmu_sc0008057.1_g000005 Rmu_sc0034532.1_g000001 Rmu_sc0036406.1_g000001 Rmu_ssc0000008.1_g000009
rosa_roxburghii Rroxscaffold_1G00030520 Rroxscaffold_2G00107360 Rroxscaffold_2G00153420 Rroxscaffold_5G00335750 Rroxscaffold_5G00351760 Rroxscaffold_5G00352080 Rroxscaffold_6G00419090
rosa_rugosa Rorug01G0341800 Rorug01G0341900 Rorug02G0180200 Rorug02G0180300 Rorug03G0186100 Rorug03G0186200 Rorug03G0284800 Rorug04G0104500 Rorug05G0246300 Rorug06G0108400 Rorug06G0471500 Rorug06G0510400
rosa_samantha Rh1AG159000 Rh1CG148200 Rh1CG189900 Rh2AG552800 Rh2BG473900 Rh2BG612100 Rh2BG612300 Rh2DG094500 Rh2DG482600 Rh3BG234000 Rh3CG320000 Rh4AG144200 Rh4BG127900 Rh4DG097300 Rh5AG128900 Rh5AG381200 Rh5BG363000 Rh5DG491900 Rh6AG048400 Rh6BG168100 Rh6CG005800 Rh6DG006000 Rh7AG255100 Rh7BG360600 Rh7CG271700 Rh7CG482300 Rh7DG451200
rosa_wichuraiana Rw4G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 30
AclWI GGATC 1 cut(s) 143
AcsI RAATTY 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 30
AgsI TTSAA 2 cut(s) 257, 344
AjnI CCWGG 1 cut(s) 208
AluBI AGCT 2 cut(s) 106, 260
AluI AGCT 2 cut(s) 106, 260
Alw26I GTCTC 1 cut(s) 140
AlwI GGATC 1 cut(s) 143
AoxI GGCC 2 cut(s) 205, 334
ApeKI GCWGC 1 cut(s) 302
ApoI RAATTY 1 cut(s) 5
AspS9I GGNCC 2 cut(s) 206, 334
AsuHPI GGTGA 4 cut(s) 158, 194, 224, 277
BanII GRGCYC 1 cut(s) 233
BbvI GCAGC 1 cut(s) 289
BciT130I CCWGG 1 cut(s) 210
BclI TGATCA 1 cut(s) 163
BcoDI GTCTC 1 cut(s) 140
BisI GCNGC 1 cut(s) 303
BlsI GCNGC 1 cut(s) 304
Bme1390I CCNGG 1 cut(s) 210
BmgT120I GGNCC 2 cut(s) 206, 334
BmrFI CCNGG 1 cut(s) 210
BmsI GCATC 1 cut(s) 46
BsaBI GATNNNNATC 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 208
Bsc4I CCNNNNNNNGG 1 cut(s) 30
Bse118I RCCGGY 1 cut(s) 179
Bse1I ACTGG 1 cut(s) 280
Bse8I GATNNNNATC 1 cut(s) 84
BseBI CCWGG 1 cut(s) 210
BseDI CCNNGG 1 cut(s) 208
BseGI GGATG 1 cut(s) 61
BseJI GATNNNNATC 1 cut(s) 84
BseLI CCNNNNNNNGG 1 cut(s) 30
BseNI ACTGG 1 cut(s) 280
BseRI GAGGAG 2 cut(s) 65, 128
BseXI GCAGC 1 cut(s) 289
BshFI GGCC 2 cut(s) 207, 336
BsiSI CCGG 1 cut(s) 180
BslI CCNNNNNNNGG 1 cut(s) 30
BsmAI GTCTC 1 cut(s) 140
BsnI GGCC 2 cut(s) 207, 336
Bsp1286I GDGCHC 1 cut(s) 233
Bsp143I GATC 2 cut(s) 148, 163
BspANI GGCC 2 cut(s) 207, 336
BspPI GGATC 1 cut(s) 143
BsrFI RCCGGY 1 cut(s) 179
BsrI ACTGG 1 cut(s) 280
BssAI RCCGGY 1 cut(s) 179
BssECI CCNNGG 1 cut(s) 208
BssMI GATC 2 cut(s) 148, 163
Bst2UI CCWGG 1 cut(s) 210
Bst4CI ACNGT 1 cut(s) 146
BstF5I GGATG 1 cut(s) 61
BstKTI GATC 2 cut(s) 151, 166
BstMAI GTCTC 1 cut(s) 140
BstMBI GATC 2 cut(s) 148, 163
BstMWI GCNNNNNNNGC 1 cut(s) 237
BstNI CCWGG 1 cut(s) 210
BstNSI RCATGY 2 cut(s) 131, 240
BstSCI CCNGG 1 cut(s) 208
BstV1I GCAGC 1 cut(s) 289
BsuRI GGCC 2 cut(s) 207, 336
BtsCI GGATG 1 cut(s) 61
BtsIMutI CAGTG 2 cut(s) 152, 273
Cfr10I RCCGGY 1 cut(s) 179
Cfr13I GGNCC 2 cut(s) 206, 334
CviAII CATG 2 cut(s) 128, 237
CviJI RGCY 6 cut(s) 106, 207, 231, 260, 302, 336
CviKI_1 RGCY 6 cut(s) 106, 207, 231, 260, 302, 336
DpnI GATC 2 cut(s) 150, 165
DpnII GATC 2 cut(s) 148, 163
Eco24I GRGCYC 1 cut(s) 233
EcoO109I RGGNCCY 1 cut(s) 206
EcoRII CCWGG 1 cut(s) 208
EcoT38I GRGCYC 1 cut(s) 233
FaeI CATG 2 cut(s) 131, 240
FaiI YATR 6 cut(s) 83, 90, 92, 129, 238, 285
FatI CATG 2 cut(s) 127, 236
FbaI TGATCA 1 cut(s) 163
Fnu4HI GCNGC 1 cut(s) 303
FokI GGATG 1 cut(s) 68
FriOI GRGCYC 1 cut(s) 233
Fsp4HI GCNGC 1 cut(s) 303
GluI GCNGC 1 cut(s) 303
HaeIII GGCC 2 cut(s) 207, 336
HapII CCGG 1 cut(s) 180
Hin1II CATG 2 cut(s) 131, 240
HindIII AAGCTT 1 cut(s) 104
HinfI GANTC 1 cut(s) 185
HpaII CCGG 1 cut(s) 180
HphI GGTGA 4 cut(s) 158, 194, 224, 277
HpyCH4III ACNGT 1 cut(s) 146
HpyCH4V TGCA 1 cut(s) 240
HpyF10VI GCNNNNNNNGC 1 cut(s) 237
Hsp92II CATG 2 cut(s) 131, 240
Ksp22I TGATCA 1 cut(s) 163
Kzo9I GATC 2 cut(s) 148, 163
LpnPI CCDG 7 cut(s) 87, 135, 193, 195, 222, 261, 317
Lsp1109I GCAGC 1 cut(s) 289
LweI GCATC 1 cut(s) 46
MaeIII GTNAC 2 cut(s) 196, 212
MalI GATC 2 cut(s) 150, 165
MboI GATC 2 cut(s) 148, 163
MhlI GDGCHC 1 cut(s) 233
MluCI AATT 4 cut(s) 5, 25, 159, 252
MnlI CCTC 4 cut(s) 33, 43, 46, 149
MseI TTAA 2 cut(s) 11, 102
MspI CCGG 1 cut(s) 180
MspR9I CCNGG 1 cut(s) 210
MvaI CCWGG 1 cut(s) 210
MwoI GCNNNNNNNGC 1 cut(s) 237
NdeII GATC 2 cut(s) 148, 163
NlaIII CATG 2 cut(s) 131, 240
NmuCI GTSAC 2 cut(s) 196, 212
NspI RCATGY 2 cut(s) 131, 240
PfeI GAWTC 1 cut(s) 185
PflMI CCANNNNNTGG 1 cut(s) 30
PkrI GCNGC 1 cut(s) 304
Psp6I CCWGG 1 cut(s) 208
PspGI CCWGG 1 cut(s) 208
PspPI GGNCC 2 cut(s) 206, 334
SaqAI TTAA 2 cut(s) 11, 102
SatI GCNGC 1 cut(s) 303
Sau3AI GATC 2 cut(s) 148, 163
Sau96I GGNCC 2 cut(s) 206, 334
ScrFI CCNGG 1 cut(s) 210
SduI GDGCHC 1 cut(s) 233
SetI ASST 4 cut(s) 44, 108, 262, 290
SfaNI GCATC 1 cut(s) 46
Sse9I AATT 4 cut(s) 5, 25, 159, 252
StyD4I CCNGG 1 cut(s) 208
TaaI ACNGT 1 cut(s) 146
TaqI TCGA 1 cut(s) 315
TasI AATT 4 cut(s) 5, 25, 159, 252
TfiI GAWTC 1 cut(s) 185
Tru1I TTAA 2 cut(s) 11, 102
Tru9I TTAA 2 cut(s) 11, 102
TscAI CASTG 2 cut(s) 159, 280
TseFI GTSAC 2 cut(s) 196, 212
TseI GCWGC 1 cut(s) 302
Tsp45I GTSAC 2 cut(s) 196, 212
TspDTI ATGAA 2 cut(s) 17, 272
TspRI CASTG 2 cut(s) 159, 280
Van91I CCANNNNNTGG 1 cut(s) 30
XapI RAATTY 1 cut(s) 5
XceI RCATGY 2 cut(s) 131, 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.