RLG00000003076

ATPase 11, plasma

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000545
Physical Location & Seq
Forward (+)
44078001 .. 44079338
1338 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003076

Sequence Viewer

Length: 441 bp
ATGGAGGACGAGAAGCCTGAAGTGCTTGACGCGGTGCTGAAGGAAACAGTTGATTTGGAGAACATACCCATTGAGGAGGTGCTTGAGAATATGAGATGTAGTAAAGAGGGTCTCAGTAGTGAGGCTGCTGAGGAAAGATTAGCAATTTTTGGGCATAACAAGCTTGAGGAAAAGCAGGGGAAGCCTCCTGACTGGCAAGATTTTGCGGTTATTATTGCTCTGCTGGTCATCAACTCCACCATTAGTTTCATCAAGGAAAATACTGCGGGTAATGCTGCAGCAGCTCTCATGGCTCGTCTTGCTCCTAAAGCCAAGGGGGAAACAAGCTTGCTGGGAGAGAACATTTCTTTGTCTGCATCAAGGAAAAACTGGTGCATACAGCATGCTATAAATGCCAAGAGCAGTTGTTATTCTCCATCACTTCCATATTCTCTAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

147

Amino Acids

15.96

Weight (kDa)

4.89

Isoelectric Point (pI)

41.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cation_ATPase_N PF00690 21 - 62 2.1e-09 Cation transporter/ATPase, N-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000545)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36571
pyrus_communis pycom02g01560 pycom08g10820 pycom09g05820 pycom13g21850 pycom14g16010
rosa_chinensis RchiOBHm_Chr2g0094861 RchiOBHm_Chr2g0124911 RchiOBHm_Chr2g0138581 RchiOBHm_Chr2g0160851 RchiOBHm_Chr4g0407411
rosa_laevigata RLG00000001652 RLG00000001872 RLG00000002037 RLG00000003076 RLG00000006419 RLG00000016771 RLG00000017383 RLG00000022851 RLG00000030563 RLG00000033869 RLG00000034176
rosa_multiflora Rmu_co8013424.1_g000001 Rmu_co8016716.1_g000001 Rmu_co8183472.1_g000001 Rmu_co8254047.1_g000001 Rmu_co8354891.1_g000001 Rmu_sc0000124.1_g000003 Rmu_sc0002132.1_g000027 Rmu_sc0003007.1_g000011 Rmu_sc0003221.1_g000096 Rmu_sc0003221.1_g000097 Rmu_sc0005119.1_g000004 Rmu_sc0008057.1_g000005 Rmu_sc0034532.1_g000001 Rmu_sc0036406.1_g000001 Rmu_ssc0000008.1_g000009
rosa_roxburghii Rroxscaffold_1G00030520 Rroxscaffold_2G00107360 Rroxscaffold_2G00153420 Rroxscaffold_5G00335750 Rroxscaffold_5G00351760 Rroxscaffold_5G00352080 Rroxscaffold_6G00419090
rosa_rugosa Rorug01G0341800 Rorug01G0341900 Rorug02G0180200 Rorug02G0180300 Rorug03G0186100 Rorug03G0186200 Rorug03G0284800 Rorug04G0104500 Rorug05G0246300 Rorug06G0108400 Rorug06G0471500 Rorug06G0510400
rosa_samantha Rh1AG159000 Rh1CG148200 Rh1CG189900 Rh2AG552800 Rh2BG473900 Rh2BG612100 Rh2BG612300 Rh2DG094500 Rh2DG482600 Rh3BG234000 Rh3CG320000 Rh4AG144200 Rh4BG127900 Rh4DG097300 Rh5AG128900 Rh5AG381200 Rh5BG363000 Rh5DG491900 Rh6AG048400 Rh6BG168100 Rh6CG005800 Rh6DG006000 Rh7AG255100 Rh7BG360600 Rh7CG271700 Rh7CG482300 Rh7DG451200
rosa_wichuraiana Rw4G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 32
AciI CCGC 3 cut(s) 32, 206, 266
AcuI CTGAAG 2 cut(s) 39, 59
AluBI AGCT 3 cut(s) 163, 284, 327
AluI AGCT 3 cut(s) 163, 284, 327
Alw26I GTCTC 1 cut(s) 116
ApeKI GCWGC 4 cut(s) 125, 275, 278, 281
BbvCI CCTCAGC 1 cut(s) 129
BbvI GCAGC 4 cut(s) 112, 262, 290, 293
BccI CCATC 1 cut(s) 424
BcoDI GTCTC 1 cut(s) 116
BfaI CTAG 1 cut(s) 434
BfmI CTRYAG 1 cut(s) 276
BisI GCNGC 4 cut(s) 126, 276, 279, 282
BlsI GCNGC 4 cut(s) 127, 277, 280, 283
BmsI GCATC 1 cut(s) 365
Bpu10I CCTNAGC 1 cut(s) 129
BpuEI CTTGAG 2 cut(s) 104, 185
BsaI GGTCTC 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 312
Bse1I ACTGG 2 cut(s) 197, 374
BseDI CCNNGG 1 cut(s) 312
BseMII CTCAG 2 cut(s) 120, 127
BseNI ACTGG 2 cut(s) 197, 374
BseRI GAGGAG 1 cut(s) 89
BseXI GCAGC 4 cut(s) 112, 262, 290, 293
BseYI CCCAGC 1 cut(s) 331
Bsh1236I CGCG 1 cut(s) 32
BsmAI GTCTC 1 cut(s) 116
Bso31I GGTCTC 1 cut(s) 116
BspACI CCGC 3 cut(s) 32, 206, 266
BspCNI CTCAG 2 cut(s) 121, 126
BspFNI CGCG 1 cut(s) 32
BspMAI CTGCAG 1 cut(s) 280
BspTNI GGTCTC 1 cut(s) 116
BsrI ACTGG 2 cut(s) 197, 374
BssECI CCNNGG 1 cut(s) 312
BssT1I CCWWGG 1 cut(s) 312
Bst4CI ACNGT 1 cut(s) 49
BstC8I GCNNGC 2 cut(s) 329, 384
BstDEI CTNAG 2 cut(s) 113, 129
BstFNI CGCG 1 cut(s) 32
BstMAI GTCTC 1 cut(s) 116
BstMWI GCNNNNNNNGC 9 cut(s) 22, 160, 181, 272, 281, 290, 299, 308, 392
BstNSI RCATGY 1 cut(s) 386
BstSFI CTRYAG 1 cut(s) 276
BstUI CGCG 1 cut(s) 32
BstV1I GCAGC 4 cut(s) 112, 262, 290, 293
Cac8I GCNNGC 2 cut(s) 329, 384
CseI GACGC 1 cut(s) 38
CviAII CATG 2 cut(s) 289, 383
CviJI RGCY 8 cut(s) 16, 125, 163, 184, 284, 293, 311, 327
CviKI_1 RGCY 8 cut(s) 16, 125, 163, 184, 284, 293, 311, 327
DdeI CTNAG 2 cut(s) 113, 129
Eco130I CCWWGG 1 cut(s) 312
Eco31I GGTCTC 1 cut(s) 116
Eco57I CTGAAG 2 cut(s) 39, 59
EcoT14I CCWWGG 1 cut(s) 312
ErhI CCWWGG 1 cut(s) 312
FaeI CATG 2 cut(s) 292, 386
FaiI YATR 8 cut(s) 65, 92, 156, 290, 377, 384, 389, 427
FatI CATG 2 cut(s) 288, 382
FauI CCCGC 1 cut(s) 259
Fnu4HI GCNGC 4 cut(s) 126, 276, 279, 282
Fsp4HI GCNGC 4 cut(s) 126, 276, 279, 282
FspBI CTAG 1 cut(s) 434
GluI GCNGC 4 cut(s) 126, 276, 279, 282
GsaI CCCAGC 1 cut(s) 335
HgaI GACGC 1 cut(s) 38
Hin1II CATG 2 cut(s) 292, 386
HindIII AAGCTT 2 cut(s) 161, 325
Hpy188III TCNNGA 1 cut(s) 188
HpyAV CCTTC 1 cut(s) 34
HpyCH4III ACNGT 1 cut(s) 49
HpyCH4V TGCA 3 cut(s) 278, 356, 375
HpyF10VI GCNNNNNNNGC 9 cut(s) 22, 160, 181, 272, 281, 290, 299, 308, 392
HpyF3I CTNAG 2 cut(s) 113, 129
Hsp92II CATG 2 cut(s) 292, 386
LmnI GCTCC 1 cut(s) 307
LpnPI CCDG 7 cut(s) 30, 161, 178, 201, 209, 317, 355
Lsp1109I GCAGC 4 cut(s) 112, 262, 290, 293
LweI GCATC 1 cut(s) 365
MaeI CTAG 1 cut(s) 434
MluCI AATT 1 cut(s) 144
MnlI CCTC 7 cut(s) 67, 70, 100, 115, 124, 160, 195
MvnI CGCG 1 cut(s) 32
MwoI GCNNNNNNNGC 9 cut(s) 22, 160, 181, 272, 281, 290, 299, 308, 392
NlaIII CATG 2 cut(s) 292, 386
NspI RCATGY 1 cut(s) 386
PaeI GCATGC 1 cut(s) 386
PkrI GCNGC 4 cut(s) 127, 277, 280, 283
PspFI CCCAGC 1 cut(s) 331
PstI CTGCAG 1 cut(s) 280
SatI GCNGC 4 cut(s) 126, 276, 279, 282
SetI ASST 4 cut(s) 81, 165, 286, 329
SfaNI GCATC 1 cut(s) 365
SfcI CTRYAG 1 cut(s) 276
SmlI CTYRAG 2 cut(s) 83, 164
SmoI CTYRAG 2 cut(s) 83, 164
SphI GCATGC 1 cut(s) 386
Sse9I AATT 1 cut(s) 144
SsiI CCGC 3 cut(s) 32, 206, 266
SspMI CTAG 1 cut(s) 434
StyI CCWWGG 1 cut(s) 312
TaaI ACNGT 1 cut(s) 49
TasI AATT 1 cut(s) 144
TseI GCWGC 4 cut(s) 125, 275, 278, 281
TspDTI ATGAA 1 cut(s) 238
XceI RCATGY 1 cut(s) 386
XspI CTAG 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.