Rroxscaffold_5G00352080

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000545
Physical Location & Seq
Reverse (-)
28963373 .. 28965723
2351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00352080.1

Sequence Viewer

Length: 318 bp
ATGGTGCAAACTTTGCATCTGCAGGAGCTGGTGCTTTGGTTGAAACTAGCCACGGTTTGGAGGTGCGAGATTTTTTTGTGGCTCATCTCGGTGGTGCATCCCGGCGTTGATTCGTTGGAGGAAGGCGAAGAAGATGGTGGCTACGGTGAGTCCACCCCGTGGTCGGAGATTGGTGACGGAGGAGAGAGATTCCTCCAGATCCAGTTTTCTCTCCTCCCACTCTCTCTCGTCCGTGCTTCTCTCTTCAACTCGGTCTCTCAACCTTTAATTCGATCAAAATCAAATCTTTACAATCGGTTAGTGCTTGTCTTATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.93

Weight (kDa)

4.83

Isoelectric Point (pI)

45.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000545)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36571
pyrus_communis pycom02g01560 pycom08g10820 pycom09g05820 pycom13g21850 pycom14g16010
rosa_chinensis RchiOBHm_Chr2g0094861 RchiOBHm_Chr2g0124911 RchiOBHm_Chr2g0138581 RchiOBHm_Chr2g0160851 RchiOBHm_Chr4g0407411
rosa_laevigata RLG00000001652 RLG00000001872 RLG00000002037 RLG00000003076 RLG00000006419 RLG00000016771 RLG00000017383 RLG00000022851 RLG00000030563 RLG00000033869 RLG00000034176
rosa_multiflora Rmu_co8013424.1_g000001 Rmu_co8016716.1_g000001 Rmu_co8183472.1_g000001 Rmu_co8254047.1_g000001 Rmu_co8354891.1_g000001 Rmu_sc0000124.1_g000003 Rmu_sc0002132.1_g000027 Rmu_sc0003007.1_g000011 Rmu_sc0003221.1_g000096 Rmu_sc0003221.1_g000097 Rmu_sc0005119.1_g000004 Rmu_sc0008057.1_g000005 Rmu_sc0034532.1_g000001 Rmu_sc0036406.1_g000001 Rmu_ssc0000008.1_g000009
rosa_roxburghii Rroxscaffold_1G00030520 Rroxscaffold_2G00107360 Rroxscaffold_2G00153420 Rroxscaffold_5G00335750 Rroxscaffold_5G00351760 Rroxscaffold_5G00352080 Rroxscaffold_6G00419090
rosa_rugosa Rorug01G0341800 Rorug01G0341900 Rorug02G0180200 Rorug02G0180300 Rorug03G0186100 Rorug03G0186200 Rorug03G0284800 Rorug04G0104500 Rorug05G0246300 Rorug06G0108400 Rorug06G0471500 Rorug06G0510400
rosa_samantha Rh1AG159000 Rh1CG148200 Rh1CG189900 Rh2AG552800 Rh2BG473900 Rh2BG612100 Rh2BG612300 Rh2DG094500 Rh2DG482600 Rh3BG234000 Rh3CG320000 Rh4AG144200 Rh4BG127900 Rh4DG097300 Rh5AG128900 Rh5AG381200 Rh5BG363000 Rh5DG491900 Rh6AG048400 Rh6BG168100 Rh6CG005800 Rh6DG006000 Rh7AG255100 Rh7BG360600 Rh7CG271700 Rh7CG482300 Rh7DG451200
rosa_wichuraiana Rw4G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 57, 159
AclWI GGATC 1 cut(s) 193
AdeI CACNNNGTG 1 cut(s) 159
AfiI CCNNNNNNNGG 3 cut(s) 57, 159, 163
AgsI TTSAA 2 cut(s) 43, 247
AluBI AGCT 1 cut(s) 28
AluI AGCT 1 cut(s) 28
Alw26I GTCTC 1 cut(s) 259
AlwI GGATC 1 cut(s) 193
AlwNI CAGNNNCTG 1 cut(s) 28
AsuC2I CCSGG 1 cut(s) 102
AsuHPI GGTGA 2 cut(s) 158, 185
BccI CCATC 1 cut(s) 128
BcnI CCSGG 1 cut(s) 102
BcoDI GTCTC 1 cut(s) 259
BfaI CTAG 1 cut(s) 47
BfmI CTRYAG 1 cut(s) 20
Bme1390I CCNGG 1 cut(s) 102
BmrFI CCNGG 1 cut(s) 102
BmsI GCATC 2 cut(s) 25, 106
BpmI CTGGAG 1 cut(s) 179
BpuMI CCSGG 1 cut(s) 102
BsaBI GATNNNNATC 1 cut(s) 277
BsaI GGTCTC 1 cut(s) 259
BsaJI CCNNGG 2 cut(s) 51, 158
Bsc4I CCNNNNNNNGG 3 cut(s) 57, 159, 163
Bse1I ACTGG 1 cut(s) 202
Bse8I GATNNNNATC 1 cut(s) 277
BseDI CCNNGG 2 cut(s) 51, 158
BseGI GGATG 1 cut(s) 97
BseJI GATNNNNATC 1 cut(s) 277
BseLI CCNNNNNNNGG 3 cut(s) 57, 159, 163
BseNI ACTGG 1 cut(s) 202
BseRI GAGGAG 2 cut(s) 195, 203
BsiSI CCGG 1 cut(s) 102
BslI CCNNNNNNNGG 3 cut(s) 57, 159, 163
BsmAI GTCTC 1 cut(s) 259
Bso31I GGTCTC 1 cut(s) 259
Bsp143I GATC 2 cut(s) 198, 272
BspMAI CTGCAG 1 cut(s) 24
BspPI GGATC 1 cut(s) 193
BspTNI GGTCTC 1 cut(s) 259
BsrI ACTGG 1 cut(s) 202
BssECI CCNNGG 2 cut(s) 51, 158
BssMI GATC 2 cut(s) 198, 272
Bst4CI ACNGT 2 cut(s) 55, 146
Bst6I CTCTTC 1 cut(s) 248
BstAPI GCANNNNNTGC 1 cut(s) 13
BstDSI CCRYGG 2 cut(s) 51, 158
BstF5I GGATG 1 cut(s) 97
BstKTI GATC 2 cut(s) 201, 275
BstMAI GTCTC 1 cut(s) 259
BstMBI GATC 2 cut(s) 198, 272
BstMWI GCNNNNNNNGC 1 cut(s) 13
BstSCI CCNGG 1 cut(s) 100
BstSFI CTRYAG 1 cut(s) 20
BstX2I RGATCY 1 cut(s) 198
BstYI RGATCY 1 cut(s) 198
BtgI CCRYGG 2 cut(s) 51, 158
BtsCI GGATG 1 cut(s) 97
CaiI CAGNNNCTG 1 cut(s) 28
CviJI RGCY 4 cut(s) 28, 50, 82, 141
CviKI_1 RGCY 4 cut(s) 28, 50, 82, 141
DpnI GATC 2 cut(s) 200, 274
DpnII GATC 2 cut(s) 198, 272
DraIII CACNNNGTG 1 cut(s) 159
Eam1104I CTCTTC 1 cut(s) 248
EarI CTCTTC 1 cut(s) 248
Eco31I GGTCTC 1 cut(s) 259
FokI GGATG 1 cut(s) 84
FspBI CTAG 1 cut(s) 47
GsuI CTGGAG 1 cut(s) 179
HapII CCGG 1 cut(s) 102
HinfI GANTC 3 cut(s) 110, 149, 189
HpaII CCGG 1 cut(s) 102
HphI GGTGA 2 cut(s) 158, 185
Hpy166II GTNNAC 1 cut(s) 153
Hpy188I TCNGA 1 cut(s) 166
Hpy188III TCNNGA 1 cut(s) 196
Hpy8I GTNNAC 1 cut(s) 153
HpyAV CCTTC 1 cut(s) 116
HpyCH4III ACNGT 2 cut(s) 55, 146
HpyCH4V TGCA 4 cut(s) 7, 16, 22, 97
HpyF10VI GCNNNNNNNGC 1 cut(s) 13
Kzo9I GATC 2 cut(s) 198, 272
LmnI GCTCC 1 cut(s) 25
LpnPI CCDG 5 cut(s) 8, 14, 115, 209, 215
LweI GCATC 2 cut(s) 25, 106
MaeI CTAG 1 cut(s) 47
MaeIII GTNAC 1 cut(s) 173
MalI GATC 2 cut(s) 200, 274
MboI GATC 2 cut(s) 198, 272
MboII GAAGA 3 cut(s) 140, 143, 235
MflI RGATCY 1 cut(s) 198
MluCI AATT 1 cut(s) 267
MlyI GAGTC 1 cut(s) 158
MmeI TCCRAC 2 cut(s) 96, 144
MnlI CCTC 5 cut(s) 54, 112, 173, 203, 224
MseI TTAA 1 cut(s) 266
MslI CAYNNNNRTG 1 cut(s) 89
MspI CCGG 1 cut(s) 102
MspR9I CCNGG 1 cut(s) 102
MwoI GCNNNNNNNGC 1 cut(s) 13
NciI CCSGG 1 cut(s) 102
NdeII GATC 2 cut(s) 198, 272
NmuCI GTSAC 1 cut(s) 173
PfeI GAWTC 2 cut(s) 110, 189
PflMI CCANNNNNTGG 2 cut(s) 57, 159
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
PstI CTGCAG 1 cut(s) 24
PstNI CAGNNNCTG 1 cut(s) 28
PsuI RGATCY 1 cut(s) 198
RseI CAYNNNNRTG 1 cut(s) 89
SaqAI TTAA 1 cut(s) 266
Sau3AI GATC 2 cut(s) 198, 272
SchI GAGTC 1 cut(s) 158
ScrFI CCNGG 1 cut(s) 102
SetI ASST 3 cut(s) 30, 65, 265
SfaNI GCATC 2 cut(s) 25, 106
SfcI CTRYAG 1 cut(s) 20
SmiMI CAYNNNNRTG 1 cut(s) 89
Sse9I AATT 1 cut(s) 267
SspMI CTAG 1 cut(s) 47
StyD4I CCNGG 1 cut(s) 100
TaaI ACNGT 2 cut(s) 55, 146
TaqI TCGA 1 cut(s) 271
TaqII GACCGA 1 cut(s) 241
TasI AATT 1 cut(s) 267
TfiI GAWTC 2 cut(s) 110, 189
Tru1I TTAA 1 cut(s) 266
Tru9I TTAA 1 cut(s) 266
TseFI GTSAC 1 cut(s) 173
Tsp45I GTSAC 1 cut(s) 173
TspGWI ACGGA 2 cut(s) 192, 221
Van91I CCANNNNNTGG 2 cut(s) 57, 159
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.