Rh2BG473900

ATPase 11, plasma

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000545
Physical Location & Seq
Forward (+)
66838137 .. 66844069
5933 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG473900.1

Sequence Viewer

Length: 348 bp
ATGGCGGATGAGAAGCCTGAAGTGCTTGACGCGGTGCTGAAGGAAACAGTTGATTTGGAAAACATACCCATTGAGGAGGTGCTTGAGAATATGAGATGTAGCAAAGAGGGTCTCAGTAGTGAGGCTGCTGAGGAAAGATTAGCCATTTTTGGGTATAACAAGCTTGAGGAAAAGAAGGCTGAGGCATTCAAGGGTGTGGTGTGTTCGATCCAAGTGGTGCCGGGTTACGATCGCGTCGGGTTTGTGTGGGTACTGGAGTCTTGGCCAATGTTTCATACAGACAAGGCGAGAGTCGTCGAGGTCGAGGTGGTGAGAGTTCGGCGTCTGGCCATCTTCTGCAAAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

115

Amino Acids

13.1

Weight (kDa)

4.9

Isoelectric Point (pI)

30.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cation_ATPase_N PF00690 21 - 61 2.8e-09 Cation transporter/ATPase, N-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000545)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36571
pyrus_communis pycom02g01560 pycom08g10820 pycom09g05820 pycom13g21850 pycom14g16010
rosa_chinensis RchiOBHm_Chr2g0094861 RchiOBHm_Chr2g0124911 RchiOBHm_Chr2g0138581 RchiOBHm_Chr2g0160851 RchiOBHm_Chr4g0407411
rosa_laevigata RLG00000001652 RLG00000001872 RLG00000002037 RLG00000003076 RLG00000006419 RLG00000016771 RLG00000017383 RLG00000022851 RLG00000030563 RLG00000033869 RLG00000034176
rosa_multiflora Rmu_co8013424.1_g000001 Rmu_co8016716.1_g000001 Rmu_co8183472.1_g000001 Rmu_co8254047.1_g000001 Rmu_co8354891.1_g000001 Rmu_sc0000124.1_g000003 Rmu_sc0002132.1_g000027 Rmu_sc0003007.1_g000011 Rmu_sc0003221.1_g000096 Rmu_sc0003221.1_g000097 Rmu_sc0005119.1_g000004 Rmu_sc0008057.1_g000005 Rmu_sc0034532.1_g000001 Rmu_sc0036406.1_g000001 Rmu_ssc0000008.1_g000009
rosa_roxburghii Rroxscaffold_1G00030520 Rroxscaffold_2G00107360 Rroxscaffold_2G00153420 Rroxscaffold_5G00335750 Rroxscaffold_5G00351760 Rroxscaffold_5G00352080 Rroxscaffold_6G00419090
rosa_rugosa Rorug01G0341800 Rorug01G0341900 Rorug02G0180200 Rorug02G0180300 Rorug03G0186100 Rorug03G0186200 Rorug03G0284800 Rorug04G0104500 Rorug05G0246300 Rorug06G0108400 Rorug06G0471500 Rorug06G0510400
rosa_samantha Rh1AG159000 Rh1CG148200 Rh1CG189900 Rh2AG552800 Rh2BG473900 Rh2BG612100 Rh2BG612300 Rh2DG094500 Rh2DG482600 Rh3BG234000 Rh3CG320000 Rh4AG144200 Rh4BG127900 Rh4DG097300 Rh5AG128900 Rh5AG381200 Rh5BG363000 Rh5DG491900 Rh6AG048400 Rh6BG168100 Rh6CG005800 Rh6DG006000 Rh7AG255100 Rh7BG360600 Rh7CG271700 Rh7CG482300 Rh7DG451200
rosa_wichuraiana Rw4G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 217
AccII CGCG 2 cut(s) 32, 234
AciI CCGC 2 cut(s) 5, 32
AclWI GGATC 1 cut(s) 202
AcoI YGGCCR 2 cut(s) 263, 327
AcuI CTGAAG 2 cut(s) 39, 59
AcyI GRCGYC 1 cut(s) 322
AfaI GTAC 1 cut(s) 252
AfiI CCNNNNNNNGG 1 cut(s) 150
AgsI TTSAA 1 cut(s) 190
AluBI AGCT 1 cut(s) 163
AluI AGCT 1 cut(s) 163
Alw26I GTCTC 1 cut(s) 116
AlwI GGATC 1 cut(s) 202
AoxI GGCC 2 cut(s) 263, 327
ApeKI GCWGC 1 cut(s) 125
AsuC2I CCSGG 1 cut(s) 222
AsuHPI GGTGA 1 cut(s) 322
BaeI ACNNNNGTAYC 2 cut(s) 242, 275
BalI TGGCCA 2 cut(s) 265, 329
BanI GGYRCC 1 cut(s) 217
BbvCI CCTCAGC 2 cut(s) 129, 180
BbvI GCAGC 1 cut(s) 112
BccI CCATC 1 cut(s) 338
BcnI CCSGG 1 cut(s) 222
BcoDI GTCTC 1 cut(s) 116
BisI GCNGC 1 cut(s) 126
BlsI GCNGC 1 cut(s) 127
Bme1390I CCNGG 1 cut(s) 222
BmiI GGNNCC 1 cut(s) 219
BmrFI CCNGG 1 cut(s) 222
BpmI CTGGAG 1 cut(s) 275
Bpu10I CCTNAGC 2 cut(s) 129, 180
BpuEI CTTGAG 2 cut(s) 104, 185
BpuMI CCSGG 1 cut(s) 222
BsaHI GRCGYC 1 cut(s) 322
BsaI GGTCTC 1 cut(s) 116
Bsc4I CCNNNNNNNGG 1 cut(s) 150
Bse1I ACTGG 1 cut(s) 258
BseGI GGATG 1 cut(s) 13
BseLI CCNNNNNNNGG 1 cut(s) 150
BseMII CTCAG 3 cut(s) 120, 127, 171
BseNI ACTGG 1 cut(s) 258
BseRI GAGGAG 1 cut(s) 89
BseXI GCAGC 1 cut(s) 112
Bsh1236I CGCG 2 cut(s) 32, 234
Bsh1285I CGRYCG 1 cut(s) 232
BshFI GGCC 2 cut(s) 265, 329
BshNI GGYRCC 1 cut(s) 217
BsiEI CGRYCG 1 cut(s) 232
BsiSI CCGG 1 cut(s) 221
BslI CCNNNNNNNGG 1 cut(s) 150
BsmAI GTCTC 1 cut(s) 116
BsmI GAATGC 1 cut(s) 185
BsnI GGCC 2 cut(s) 265, 329
Bso31I GGTCTC 1 cut(s) 116
Bsp143I GATC 2 cut(s) 207, 229
BspACI CCGC 2 cut(s) 5, 32
BspANI GGCC 2 cut(s) 265, 329
BspCNI CTCAG 3 cut(s) 121, 126, 172
BspFNI CGCG 2 cut(s) 32, 234
BspLI GGNNCC 1 cut(s) 219
BspPI GGATC 1 cut(s) 202
BspT107I GGYRCC 1 cut(s) 217
BspTNI GGTCTC 1 cut(s) 116
BsrI ACTGG 1 cut(s) 258
BssMI GATC 2 cut(s) 207, 229
BssNI GRCGYC 1 cut(s) 322
Bst4CI ACNGT 1 cut(s) 49
BstACI GRCGYC 1 cut(s) 322
BstDEI CTNAG 3 cut(s) 113, 129, 180
BstF5I GGATG 1 cut(s) 13
BstFNI CGCG 2 cut(s) 32, 234
BstKTI GATC 2 cut(s) 210, 232
BstMAI GTCTC 1 cut(s) 116
BstMBI GATC 2 cut(s) 207, 229
BstMCI CGRYCG 1 cut(s) 232
BstMWI GCNNNNNNNGC 1 cut(s) 22
BstSCI CCNGG 1 cut(s) 220
BstUI CGCG 2 cut(s) 32, 234
BstV1I GCAGC 1 cut(s) 112
BsuRI GGCC 2 cut(s) 265, 329
BtsCI GGATG 1 cut(s) 13
CseI GACGC 3 cut(s) 38, 223, 311
Csp6I GTAC 1 cut(s) 251
CviJI RGCY 7 cut(s) 16, 125, 143, 163, 179, 265, 329
CviKI_1 RGCY 7 cut(s) 16, 125, 143, 163, 179, 265, 329
CviQI GTAC 1 cut(s) 251
DdeI CTNAG 3 cut(s) 113, 129, 180
DpnI GATC 2 cut(s) 209, 231
DpnII GATC 2 cut(s) 207, 229
EaeI YGGCCR 2 cut(s) 263, 327
EciI GGCGGA 1 cut(s) 20
Eco31I GGTCTC 1 cut(s) 116
Eco57I CTGAAG 2 cut(s) 39, 59
FaiI YATR 4 cut(s) 65, 92, 156, 276
Fnu4HI GCNGC 1 cut(s) 126
FokI GGATG 1 cut(s) 20
Fsp4HI GCNGC 1 cut(s) 126
GluI GCNGC 1 cut(s) 126
GsuI CTGGAG 1 cut(s) 275
HaeIII GGCC 2 cut(s) 265, 329
HapII CCGG 1 cut(s) 221
HgaI GACGC 3 cut(s) 38, 223, 311
Hin1I GRCGYC 1 cut(s) 322
HindIII AAGCTT 1 cut(s) 161
HinfI GANTC 2 cut(s) 257, 291
HpaII CCGG 1 cut(s) 221
HphI GGTGA 1 cut(s) 322
Hpy99I CGWCG 2 cut(s) 239, 299
HpyAV CCTTC 2 cut(s) 34, 169
HpyCH4III ACNGT 1 cut(s) 49
HpyCH4V TGCA 1 cut(s) 339
HpyF10VI GCNNNNNNNGC 1 cut(s) 22
HpyF3I CTNAG 3 cut(s) 113, 129, 180
Hsp92I GRCGYC 1 cut(s) 322
Kzo9I GATC 2 cut(s) 207, 229
LpnPI CCDG 4 cut(s) 30, 234, 239, 311
Lsp1109I GCAGC 1 cut(s) 112
MaeIII GTNAC 1 cut(s) 224
MalI GATC 2 cut(s) 209, 231
MboI GATC 2 cut(s) 207, 229
MboII GAAGA 1 cut(s) 325
MlsI TGGCCA 2 cut(s) 265, 329
MluNI TGGCCA 2 cut(s) 265, 329
MlyI GAGTC 2 cut(s) 266, 300
MnlI CCTC 9 cut(s) 67, 70, 100, 115, 124, 160, 175, 292, 298
Mox20I TGGCCA 2 cut(s) 265, 329
MscI TGGCCA 2 cut(s) 265, 329
MseI TTAA 1 cut(s) 346
Msp20I TGGCCA 2 cut(s) 265, 329
MspI CCGG 1 cut(s) 221
MspR9I CCNGG 1 cut(s) 222
Mva1269I GAATGC 1 cut(s) 185
MvnI CGCG 2 cut(s) 32, 234
MwoI GCNNNNNNNGC 1 cut(s) 22
NciI CCSGG 1 cut(s) 222
NdeII GATC 2 cut(s) 207, 229
NlaIV GGNNCC 1 cut(s) 219
PcsI WCGNNNNNNNCGW 1 cut(s) 300
PctI GAATGC 1 cut(s) 185
PkrI GCNGC 1 cut(s) 127
Ple19I CGATCG 1 cut(s) 232
PleI GAGTC 2 cut(s) 265, 299
PpsI GAGTC 2 cut(s) 265, 299
PspN4I GGNNCC 1 cut(s) 219
PvuI CGATCG 1 cut(s) 232
RsaI GTAC 1 cut(s) 252
RsaNI GTAC 1 cut(s) 251
SaqAI TTAA 1 cut(s) 346
SatI GCNGC 1 cut(s) 126
Sau3AI GATC 2 cut(s) 207, 229
SchI GAGTC 2 cut(s) 266, 300
ScrFI CCNGG 1 cut(s) 222
SetI ASST 4 cut(s) 81, 165, 303, 309
SmlI CTYRAG 2 cut(s) 83, 164
SmoI CTYRAG 2 cut(s) 83, 164
SsiI CCGC 2 cut(s) 5, 32
StyD4I CCNGG 1 cut(s) 220
TaaI ACNGT 1 cut(s) 49
TaqI TCGA 3 cut(s) 206, 297, 303
Tru1I TTAA 1 cut(s) 346
Tru9I TTAA 1 cut(s) 346
TseI GCWGC 1 cut(s) 125
TspDTI ATGAA 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.