Rh7BG360600

Plasma membrane ATPase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000545
Physical Location & Seq
Reverse (-)
38128019 .. 38129071
1053 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG360600.1

Sequence Viewer

Length: 402 bp
ATGGAAAGCAGTCACTCTACCGAAAGAGTTCTTGGGTGGGTTGGGTTTGTTGAATTTGTTCGTGTATCACGGGAGATTGGGAGGTGGATTGAGGAGGATGCTTTCGTCCTTGTTCCTGGTGATATAAATCATATAATCAGCATTGAGCTTGGGGATATTATTCCAGCAGATGCTCGTCTCCTCGACGATGATCCACTGAAAATTGATCAGTCTGCACTTACTGGTGAGTCACTTTTTGTGACCAAAGGCCCTGGTGACAGTGTGTATTCGAGCTCTACATGCAAACAAGGAGAGATTGAAGCTGTGGTGATTGCCACTGATGTTCATACCTTGTTCGGCAAGGCTGCTCACCTTATCGATAGCACAAATCAACAGGGCCACTTTCAAATATGCTTACACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

133

Amino Acids

14.56

Weight (kDa)

4.64

Isoelectric Point (pI)

47.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
E1-E2_ATPase PF00122 27 - 119 4.4e-20 P-type ATPase actuator domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000545)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36571
pyrus_communis pycom02g01560 pycom08g10820 pycom09g05820 pycom13g21850 pycom14g16010
rosa_chinensis RchiOBHm_Chr2g0094861 RchiOBHm_Chr2g0124911 RchiOBHm_Chr2g0138581 RchiOBHm_Chr2g0160851 RchiOBHm_Chr4g0407411
rosa_laevigata RLG00000001652 RLG00000001872 RLG00000002037 RLG00000003076 RLG00000006419 RLG00000016771 RLG00000017383 RLG00000022851 RLG00000030563 RLG00000033869 RLG00000034176
rosa_multiflora Rmu_co8013424.1_g000001 Rmu_co8016716.1_g000001 Rmu_co8183472.1_g000001 Rmu_co8254047.1_g000001 Rmu_co8354891.1_g000001 Rmu_sc0000124.1_g000003 Rmu_sc0002132.1_g000027 Rmu_sc0003007.1_g000011 Rmu_sc0003221.1_g000096 Rmu_sc0003221.1_g000097 Rmu_sc0005119.1_g000004 Rmu_sc0008057.1_g000005 Rmu_sc0034532.1_g000001 Rmu_sc0036406.1_g000001 Rmu_ssc0000008.1_g000009
rosa_roxburghii Rroxscaffold_1G00030520 Rroxscaffold_2G00107360 Rroxscaffold_2G00153420 Rroxscaffold_5G00335750 Rroxscaffold_5G00351760 Rroxscaffold_5G00352080 Rroxscaffold_6G00419090
rosa_rugosa Rorug01G0341800 Rorug01G0341900 Rorug02G0180200 Rorug02G0180300 Rorug03G0186100 Rorug03G0186200 Rorug03G0284800 Rorug04G0104500 Rorug05G0246300 Rorug06G0108400 Rorug06G0471500 Rorug06G0510400
rosa_samantha Rh1AG159000 Rh1CG148200 Rh1CG189900 Rh2AG552800 Rh2BG473900 Rh2BG612100 Rh2BG612300 Rh2DG094500 Rh2DG482600 Rh3BG234000 Rh3CG320000 Rh4AG144200 Rh4BG127900 Rh4DG097300 Rh5AG128900 Rh5AG381200 Rh5BG363000 Rh5DG491900 Rh6AG048400 Rh6BG168100 Rh6CG005800 Rh6DG006000 Rh7AG255100 Rh7BG360600 Rh7CG271700 Rh7CG482300 Rh7DG451200
rosa_wichuraiana Rw4G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 185
AcsI RAATTY 1 cut(s) 53
AgsI TTSAA 3 cut(s) 53, 299, 386
AjnI CCWGG 2 cut(s) 115, 250
AjuI GAANNNNNNNTTGG 2 cut(s) 15, 47
AluBI AGCT 3 cut(s) 148, 273, 302
AluI AGCT 3 cut(s) 148, 273, 302
Alw21I GWGCWC 1 cut(s) 275
Alw26I GTCTC 1 cut(s) 182
AlwI GGATC 1 cut(s) 185
AoxI GGCC 2 cut(s) 247, 376
ApeKI GCWGC 1 cut(s) 344
ApoI RAATTY 1 cut(s) 53
Asp700I GAANNNNTTC 2 cut(s) 27, 57
AspS9I GGNCC 2 cut(s) 248, 376
AsuHPI GGTGA 5 cut(s) 131, 236, 266, 319, 341
BanII GRGCYC 1 cut(s) 275
Bbv12I GWGCWC 1 cut(s) 275
BbvI GCAGC 1 cut(s) 331
BciT130I CCWGG 2 cut(s) 117, 252
BclI TGATCA 1 cut(s) 205
BcoDI GTCTC 1 cut(s) 182
BfaI CTAG 1 cut(s) 400
BisI GCNGC 1 cut(s) 345
BlsI GCNGC 1 cut(s) 346
Bme1390I CCNGG 2 cut(s) 117, 252
BmgT120I GGNCC 2 cut(s) 248, 376
BmrFI CCNGG 2 cut(s) 117, 252
BmsI GCATC 2 cut(s) 88, 160
Bsa29I ATCGAT 1 cut(s) 357
BsaBI GATNNNNATC 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 250
Bse1I ACTGG 1 cut(s) 226
Bse8I GATNNNNATC 1 cut(s) 126
BseBI CCWGG 2 cut(s) 117, 252
BseCI ATCGAT 1 cut(s) 357
BseDI CCNNGG 1 cut(s) 250
BseGI GGATG 1 cut(s) 103
BseJI GATNNNNATC 1 cut(s) 126
BseNI ACTGG 1 cut(s) 226
BseRI GAGGAG 2 cut(s) 107, 170
BseXI GCAGC 1 cut(s) 331
BsgI GTGCAG 1 cut(s) 198
BshFI GGCC 2 cut(s) 249, 378
BshVI ATCGAT 1 cut(s) 357
BsiHKAI GWGCWC 1 cut(s) 275
BsmAI GTCTC 1 cut(s) 182
BsmBI CGTCTC 1 cut(s) 182
BsnI GGCC 2 cut(s) 249, 378
Bsp1286I GDGCHC 1 cut(s) 275
Bsp143I GATC 2 cut(s) 190, 205
BspANI GGCC 2 cut(s) 249, 378
BspDI ATCGAT 1 cut(s) 357
BspPI GGATC 1 cut(s) 185
BsrI ACTGG 1 cut(s) 226
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 2 cut(s) 190, 205
Bst2UI CCWGG 2 cut(s) 117, 252
Bst4CI ACNGT 1 cut(s) 260
BstF5I GGATG 1 cut(s) 103
BstKTI GATC 2 cut(s) 193, 208
BstMAI GTCTC 1 cut(s) 182
BstMBI GATC 2 cut(s) 190, 205
BstMWI GCNNNNNNNGC 1 cut(s) 279
BstNI CCWGG 2 cut(s) 117, 252
BstNSI RCATGY 1 cut(s) 282
BstSCI CCNGG 2 cut(s) 115, 250
BstV1I GCAGC 1 cut(s) 331
Bsu15I ATCGAT 1 cut(s) 357
BsuRI GGCC 2 cut(s) 249, 378
BsuTUI ATCGAT 1 cut(s) 357
BtsCI GGATG 1 cut(s) 103
BtsIMutI CAGTG 3 cut(s) 194, 265, 315
Cfr13I GGNCC 2 cut(s) 248, 376
ClaI ATCGAT 1 cut(s) 357
CviAII CATG 1 cut(s) 279
CviJI RGCY 6 cut(s) 148, 249, 273, 302, 344, 378
CviKI_1 RGCY 6 cut(s) 148, 249, 273, 302, 344, 378
DpnI GATC 2 cut(s) 192, 207
DpnII GATC 2 cut(s) 190, 205
Ecl136II GAGCTC 1 cut(s) 273
Eco24I GRGCYC 1 cut(s) 275
Eco53kI GAGCTC 1 cut(s) 273
EcoICRI GAGCTC 1 cut(s) 273
EcoO109I RGGNCCY 1 cut(s) 248
EcoRII CCWGG 2 cut(s) 115, 250
EcoT38I GRGCYC 1 cut(s) 275
Esp3I CGTCTC 1 cut(s) 182
FaeI CATG 1 cut(s) 282
FaiI YATR 6 cut(s) 125, 132, 134, 280, 327, 391
FatI CATG 1 cut(s) 278
FbaI TGATCA 1 cut(s) 205
Fnu4HI GCNGC 1 cut(s) 345
FokI GGATG 1 cut(s) 110
FriOI GRGCYC 1 cut(s) 275
Fsp4HI GCNGC 1 cut(s) 345
FspBI CTAG 1 cut(s) 400
GluI GCNGC 1 cut(s) 345
HaeIII GGCC 2 cut(s) 249, 378
Hin1II CATG 1 cut(s) 282
HinfI GANTC 1 cut(s) 227
HphI GGTGA 5 cut(s) 131, 236, 266, 319, 341
Hpy99I CGWCG 1 cut(s) 188
HpyCH4III ACNGT 1 cut(s) 260
HpyCH4V TGCA 2 cut(s) 215, 282
HpyF10VI GCNNNNNNNGC 1 cut(s) 279
Hsp92II CATG 1 cut(s) 282
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 2 cut(s) 190, 205
LpnPI CCDG 7 cut(s) 102, 129, 177, 207, 237, 264, 359
Lsp1109I GCAGC 1 cut(s) 331
LweI GCATC 2 cut(s) 88, 160
MaeI CTAG 1 cut(s) 400
MaeIII GTNAC 4 cut(s) 11, 228, 238, 254
MalI GATC 2 cut(s) 192, 207
MboI GATC 2 cut(s) 190, 205
MhlI GDGCHC 1 cut(s) 275
MluCI AATT 2 cut(s) 53, 201
MlyI GAGTC 1 cut(s) 236
MnlI CCTC 4 cut(s) 75, 85, 88, 191
MroXI GAANNNNTTC 2 cut(s) 27, 57
MspR9I CCNGG 2 cut(s) 117, 252
MvaI CCWGG 2 cut(s) 117, 252
MwoI GCNNNNNNNGC 1 cut(s) 279
NdeII GATC 2 cut(s) 190, 205
NlaIII CATG 1 cut(s) 282
NmuCI GTSAC 4 cut(s) 11, 228, 238, 254
NspI RCATGY 1 cut(s) 282
PdmI GAANNNNTTC 2 cut(s) 27, 57
PkrI GCNGC 1 cut(s) 346
PleI GAGTC 1 cut(s) 235
PpsI GAGTC 1 cut(s) 235
Psp124BI GAGCTC 1 cut(s) 275
Psp6I CCWGG 2 cut(s) 115, 250
PspGI CCWGG 2 cut(s) 115, 250
PspPI GGNCC 2 cut(s) 248, 376
SacI GAGCTC 1 cut(s) 275
SatI GCNGC 1 cut(s) 345
Sau3AI GATC 2 cut(s) 190, 205
Sau96I GGNCC 2 cut(s) 248, 376
SchI GAGTC 1 cut(s) 236
ScrFI CCNGG 2 cut(s) 117, 252
SduI GDGCHC 1 cut(s) 275
SetI ASST 6 cut(s) 86, 150, 275, 304, 332, 354
SfaNI GCATC 2 cut(s) 88, 160
Sse9I AATT 2 cut(s) 53, 201
SspMI CTAG 1 cut(s) 400
SstI GAGCTC 1 cut(s) 275
StyD4I CCNGG 2 cut(s) 115, 250
TaaI ACNGT 1 cut(s) 260
TaqI TCGA 3 cut(s) 183, 269, 357
TasI AATT 2 cut(s) 53, 201
TscAI CASTG 3 cut(s) 201, 265, 322
TseFI GTSAC 4 cut(s) 11, 228, 238, 254
TseI GCWGC 1 cut(s) 344
Tsp45I GTSAC 4 cut(s) 11, 228, 238, 254
TspDTI ATGAA 1 cut(s) 314
TspRI CASTG 3 cut(s) 201, 265, 322
XapI RAATTY 1 cut(s) 53
XceI RCATGY 1 cut(s) 282
XmnI GAANNNNTTC 2 cut(s) 27, 57
XspI CTAG 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.