Rmu_co8183472.1_g000001

Plasma membrane ATPase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8183472.1
OG0000545
Physical Location & Seq
Reverse (-)
2 .. 689
688 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8183472.1_g000001.1.cds

Sequence Viewer

Length: 688 bp
ataatcagcattaagttgggagatatagtgcctgctgatgctcgccttcttgagggtgatcctctgaagattgaccagtctgccctaaccggcgagtcccttgctgtcactaaaaatcctggagatgaagtgttttctggctcaacatgtaaacagggtgaaattgaagcagtggtcattgcaactggtgtgcacaccttctttggtaaagctgcacatcttgtggacagcaccaacaatgttgggcattttcagcaagttctcacagcaattggaaacttctgcatttgttcaattggtgtgggaatacttattgaaattgttgtcatgtacccaattcagaagcgcaagtacagggatgggattgataatttgctggttctcttgattggtggaatcccaattgctatgcctactgttttatctgtcacgatggctataggttctcacaggctttctcagcaaggtgctattactaagagaatgactgccattgaggaaatggctggcatggatgtactgtgcagtgataagactgggaccttgaccctgaacaagctgacagttgatagaaatctgattgaagtgttccccaagggtgtggagaaagagcatgttatccttcttgcagcaagggcttctagaactgaaaatcaggatgctattgatgctgccatagtaaatatgc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

229

Amino Acids

24.43

Weight (kDa)

5.54

Isoelectric Point (pI)

28.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000545)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36571
pyrus_communis pycom02g01560 pycom08g10820 pycom09g05820 pycom13g21850 pycom14g16010
rosa_chinensis RchiOBHm_Chr2g0094861 RchiOBHm_Chr2g0124911 RchiOBHm_Chr2g0138581 RchiOBHm_Chr2g0160851 RchiOBHm_Chr4g0407411
rosa_laevigata RLG00000001652 RLG00000001872 RLG00000002037 RLG00000003076 RLG00000006419 RLG00000016771 RLG00000017383 RLG00000022851 RLG00000030563 RLG00000033869 RLG00000034176
rosa_multiflora Rmu_co8013424.1_g000001 Rmu_co8016716.1_g000001 Rmu_co8183472.1_g000001 Rmu_co8254047.1_g000001 Rmu_co8354891.1_g000001 Rmu_sc0000124.1_g000003 Rmu_sc0002132.1_g000027 Rmu_sc0003007.1_g000011 Rmu_sc0003221.1_g000096 Rmu_sc0003221.1_g000097 Rmu_sc0005119.1_g000004 Rmu_sc0008057.1_g000005 Rmu_sc0034532.1_g000001 Rmu_sc0036406.1_g000001 Rmu_ssc0000008.1_g000009
rosa_roxburghii Rroxscaffold_1G00030520 Rroxscaffold_2G00107360 Rroxscaffold_2G00153420 Rroxscaffold_5G00335750 Rroxscaffold_5G00351760 Rroxscaffold_5G00352080 Rroxscaffold_6G00419090
rosa_rugosa Rorug01G0341800 Rorug01G0341900 Rorug02G0180200 Rorug02G0180300 Rorug03G0186100 Rorug03G0186200 Rorug03G0284800 Rorug04G0104500 Rorug05G0246300 Rorug06G0108400 Rorug06G0471500 Rorug06G0510400
rosa_samantha Rh1AG159000 Rh1CG148200 Rh1CG189900 Rh2AG552800 Rh2BG473900 Rh2BG612100 Rh2BG612300 Rh2DG094500 Rh2DG482600 Rh3BG234000 Rh3CG320000 Rh4AG144200 Rh4BG127900 Rh4DG097300 Rh5AG128900 Rh5AG381200 Rh5BG363000 Rh5DG491900 Rh6AG048400 Rh6BG168100 Rh6CG005800 Rh6DG006000 Rh7AG255100 Rh7BG360600 Rh7CG271700 Rh7CG482300 Rh7DG451200
rosa_wichuraiana Rw4G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 53
AcuI CTGAAG 1 cut(s) 86
AfaI GTAC 3 cut(s) 332, 353, 519
AfiI CCNNNNNNNGG 1 cut(s) 52
AflIII ACRYGT 1 cut(s) 146
AgsI TTSAA 4 cut(s) 167, 294, 317, 584
AjnI CCWGG 1 cut(s) 118
AluBI AGCT 2 cut(s) 212, 559
AluI AGCT 2 cut(s) 212, 559
Alw21I GWGCWC 1 cut(s) 195
Alw44I GTGCAC 1 cut(s) 191
AlwI GGATC 1 cut(s) 53
ApaLI GTGCAC 1 cut(s) 191
ApeKI GCWGC 3 cut(s) 212, 629, 671
AspLEI GCGC 1 cut(s) 348
AspS9I GGNCC 1 cut(s) 540
AsuHPI GGTGA 2 cut(s) 68, 170
AvaII GGWCC 1 cut(s) 540
BaeGI GKGCMC 1 cut(s) 195
BarI GAAGNNNNNNTAC 2 cut(s) 335, 367
Bbv12I GWGCWC 1 cut(s) 195
BbvI GCAGC 3 cut(s) 199, 641, 658
BccI CCATC 2 cut(s) 353, 427
BcgI CGANNNNNNTGC 2 cut(s) 83, 117
BciT130I CCWGG 1 cut(s) 120
BfaI CTAG 1 cut(s) 642
BfmI CTRYAG 1 cut(s) 438
BisI GCNGC 3 cut(s) 213, 630, 672
BlsI GCNGC 3 cut(s) 214, 631, 673
Bme1390I CCNGG 1 cut(s) 120
Bme18I GGWCC 1 cut(s) 540
BmgT120I GGNCC 1 cut(s) 540
BmiI GGNNCC 1 cut(s) 541
BmrFI CCNGG 1 cut(s) 120
BmrI ACTGGG 1 cut(s) 546
BmsI GCATC 3 cut(s) 28, 649, 658
BmuI ACTGGG 1 cut(s) 546
BpmI CTGGAG 1 cut(s) 141
BpuEI CTTGAG 1 cut(s) 71
BsaBI GATNNNNATC 1 cut(s) 573
BsaJI CCNNGG 1 cut(s) 594
BsaXI ACNNNNNCTCC 4 cut(s) 12, 42, 114, 144
Bsc4I CCNNNNNNNGG 1 cut(s) 52
Bse118I RCCGGY 1 cut(s) 89
Bse1I ACTGG 3 cut(s) 76, 190, 541
Bse3DI GCAATG 1 cut(s) 177
Bse8I GATNNNNATC 1 cut(s) 573
BseBI CCWGG 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 594
BseGI GGATG 3 cut(s) 364, 520, 664
BseJI GATNNNNATC 1 cut(s) 573
BseLI CCNNNNNNNGG 1 cut(s) 52
BseMI GCAATG 1 cut(s) 177
BseMII CTCAG 1 cut(s) 473
BseNI ACTGG 3 cut(s) 76, 190, 541
BseSI GKGCMC 1 cut(s) 195
BseXI GCAGC 3 cut(s) 199, 641, 658
BsgI GTGCAG 2 cut(s) 198, 544
BsiHKAI GWGCWC 1 cut(s) 195
BsiSI CCGG 1 cut(s) 90
BslFI GGGAC 2 cut(s) 82, 553
BslI CCNNNNNNNGG 1 cut(s) 52
BsmFI GGGAC 2 cut(s) 82, 553
Bsp1286I GDGCHC 1 cut(s) 195
Bsp143I GATC 1 cut(s) 58
BspCNI CTCAG 1 cut(s) 472
BspLI GGNNCC 1 cut(s) 541
BspPI GGATC 1 cut(s) 53
BsrDI GCAATG 1 cut(s) 177
BsrFI RCCGGY 1 cut(s) 89
BsrI ACTGG 3 cut(s) 76, 190, 541
BssAI RCCGGY 1 cut(s) 89
BssECI CCNNGG 1 cut(s) 594
BssMI GATC 1 cut(s) 58
BssT1I CCWWGG 1 cut(s) 594
Bst2UI CCWGG 1 cut(s) 120
Bst4CI ACNGT 3 cut(s) 418, 522, 565
BstC8I GCNNGC 3 cut(s) 33, 43, 508
BstDEI CTNAG 2 cut(s) 459, 477
BstENI CCTNNNNNAGG 1 cut(s) 50
BstF5I GGATG 3 cut(s) 364, 520, 664
BstHHI GCGC 1 cut(s) 348
BstKTI GATC 1 cut(s) 61
BstMBI GATC 1 cut(s) 58
BstMWI GCNNNNNNNGC 4 cut(s) 253, 460, 635, 668
BstNI CCWGG 1 cut(s) 120
BstNSI RCATGY 2 cut(s) 150, 617
BstSCI CCNGG 1 cut(s) 118
BstSFI CTRYAG 1 cut(s) 438
BstSLI GKGCMC 1 cut(s) 195
BstV1I GCAGC 3 cut(s) 199, 641, 658
BstXI CCANNNNNNTGG 1 cut(s) 601
BtsCI GGATG 3 cut(s) 364, 520, 664
BtsI GCAGTG 2 cut(s) 177, 532
BtsIMutI CAGTG 2 cut(s) 177, 532
Cac8I GCNNGC 3 cut(s) 33, 43, 508
CfoI GCGC 1 cut(s) 348
Cfr10I RCCGGY 1 cut(s) 89
Cfr13I GGNCC 1 cut(s) 540
Csp6I GTAC 3 cut(s) 331, 352, 518
CspCI CAANNNNNGTGG 2 cut(s) 282, 317
CviAII CATG 4 cut(s) 147, 328, 511, 614
CviJI RGCY 7 cut(s) 141, 212, 437, 454, 506, 559, 638
CviKI_1 RGCY 7 cut(s) 141, 212, 437, 454, 506, 559, 638
CviQI GTAC 3 cut(s) 331, 352, 518
DdeI CTNAG 2 cut(s) 459, 477
DpnI GATC 1 cut(s) 60
DpnII GATC 1 cut(s) 58
Eco130I CCWWGG 1 cut(s) 594
Eco47I GGWCC 1 cut(s) 540
Eco57I CTGAAG 1 cut(s) 86
EcoNI CCTNNNNNAGG 1 cut(s) 50
EcoO109I RGGNCCY 1 cut(s) 540
EcoRII CCWGG 1 cut(s) 118
EcoT14I CCWWGG 1 cut(s) 594
ErhI CCWWGG 1 cut(s) 594
FaeI CATG 4 cut(s) 150, 331, 514, 617
FaiI YATR 9 cut(s) 26, 148, 329, 410, 440, 512, 615, 677, 686
FaqI GGGAC 2 cut(s) 82, 553
FatI CATG 4 cut(s) 146, 327, 510, 613
Fnu4HI GCNGC 3 cut(s) 213, 630, 672
FokI GGATG 3 cut(s) 371, 527, 671
Fsp4HI GCNGC 3 cut(s) 213, 630, 672
FspBI CTAG 1 cut(s) 642
GlaI GCGC 1 cut(s) 347
GluI GCNGC 3 cut(s) 213, 630, 672
GsuI CTGGAG 1 cut(s) 141
HapII CCGG 1 cut(s) 90
HhaI GCGC 1 cut(s) 348
Hin1II CATG 4 cut(s) 150, 331, 514, 617
Hin6I GCGC 1 cut(s) 346
HinP1I GCGC 1 cut(s) 346
HinfI GANTC 2 cut(s) 95, 396
HpaII CCGG 1 cut(s) 90
HphI GGTGA 2 cut(s) 68, 170
Hpy166II GTNNAC 3 cut(s) 152, 193, 226
Hpy188I TCNGA 3 cut(s) 66, 342, 579
Hpy188III TCNNGA 5 cut(s) 50, 385, 430, 642, 656
Hpy8I GTNNAC 3 cut(s) 152, 193, 226
HpyAV CCTTC 3 cut(s) 56, 208, 632
HpyCH4III ACNGT 3 cut(s) 418, 522, 565
HpyCH4V TGCA 6 cut(s) 182, 193, 215, 285, 525, 629
HpyF10VI GCNNNNNNNGC 4 cut(s) 253, 460, 635, 668
HpyF3I CTNAG 2 cut(s) 459, 477
Hsp92II CATG 4 cut(s) 150, 331, 514, 617
HspAI GCGC 1 cut(s) 346
Kzo9I GATC 1 cut(s) 58
Lsp1109I GCAGC 3 cut(s) 199, 641, 658
LweI GCATC 3 cut(s) 28, 649, 658
MaeI CTAG 1 cut(s) 642
MaeIII GTNAC 2 cut(s) 106, 427
MalI GATC 1 cut(s) 60
MboI GATC 1 cut(s) 58
MboII GAAGA 1 cut(s) 79
MfeI CAATTG 3 cut(s) 270, 294, 402
MhlI GDGCHC 1 cut(s) 195
MluCI AATT 7 cut(s) 162, 270, 294, 318, 336, 370, 402
MlyI GAGTC 1 cut(s) 104
MnlI CCTC 3 cut(s) 46, 72, 490
MseI TTAA 1 cut(s) 12
MspI CCGG 1 cut(s) 90
MspR9I CCNGG 1 cut(s) 120
MunI CAATTG 3 cut(s) 270, 294, 402
MvaI CCWGG 1 cut(s) 120
MwoI GCNNNNNNNGC 4 cut(s) 253, 460, 635, 668
NdeII GATC 1 cut(s) 58
NlaIII CATG 4 cut(s) 150, 331, 514, 617
NlaIV GGNNCC 1 cut(s) 541
NmuCI GTSAC 2 cut(s) 106, 427
NspI RCATGY 2 cut(s) 150, 617
PciI ACATGT 1 cut(s) 146
PfeI GAWTC 1 cut(s) 396
PfoI TCCNGGA 1 cut(s) 118
PkrI GCNGC 3 cut(s) 214, 631, 673
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
PpuMI RGGWCCY 1 cut(s) 540
PscI ACATGT 1 cut(s) 146
Psp5II RGGWCCY 1 cut(s) 540
Psp6I CCWGG 1 cut(s) 118
PspGI CCWGG 1 cut(s) 118
PspN4I GGNNCC 1 cut(s) 541
PspPI GGNCC 1 cut(s) 540
PspPPI RGGWCCY 1 cut(s) 540
RsaI GTAC 3 cut(s) 332, 353, 519
RsaNI GTAC 3 cut(s) 331, 352, 518
SaqAI TTAA 1 cut(s) 12
SatI GCNGC 3 cut(s) 213, 630, 672
Sau3AI GATC 1 cut(s) 58
Sau96I GGNCC 1 cut(s) 540
SchI GAGTC 1 cut(s) 104
ScrFI CCNGG 1 cut(s) 120
SduI GDGCHC 1 cut(s) 195
SetI ASST 6 cut(s) 200, 214, 445, 469, 545, 561
SfaNI GCATC 3 cut(s) 28, 649, 658
SfcI CTRYAG 1 cut(s) 438
SinI GGWCC 1 cut(s) 540
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
Sse9I AATT 7 cut(s) 162, 270, 294, 318, 336, 370, 402
SspMI CTAG 1 cut(s) 642
StyD4I CCNGG 1 cut(s) 118
StyI CCWWGG 1 cut(s) 594
TaaI ACNGT 3 cut(s) 418, 522, 565
TasI AATT 7 cut(s) 162, 270, 294, 318, 336, 370, 402
TatI WGTACW 2 cut(s) 351, 517
TfiI GAWTC 1 cut(s) 396
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TscAI CASTG 2 cut(s) 177, 532
TseFI GTSAC 2 cut(s) 106, 427
TseI GCWGC 3 cut(s) 212, 629, 671
Tsp45I GTSAC 2 cut(s) 106, 427
TspDTI ATGAA 1 cut(s) 141
TspRI CASTG 2 cut(s) 177, 532
VneI GTGCAC 1 cut(s) 191
VpaK11BI GGWCC 1 cut(s) 540
XagI CCTNNNNNAGG 1 cut(s) 50
XbaI TCTAGA 1 cut(s) 641
XceI RCATGY 2 cut(s) 150, 617
XcmI CCANNNNNNNNNTGG 1 cut(s) 499
XspI CTAG 1 cut(s) 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.