Rh2DG094500

ATPase 10, plasma

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000545
Physical Location & Seq
Reverse (-)
7420110 .. 7423345
3236 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG094500.1

Sequence Viewer

Length: 459 bp
ATGGTTGTGGCCGGCGGTGGAGGAGAAGGGTCGCTTGGGCGGAGCAGAGGACTGAGAGCCACCGCGCAGGGCCGTTCAGAGCGCACCAGATCGGAGCATCGCATTCACCATTTTCTCGTTGTGGAGCCTAGAAGCTTGGTGCAGAAAGAGGATCTTATTTCTCAAAGTCTAAGCTGCTTTCAGAGCAAACAGCATCTTCCCACACACACTCAGGTGAACAAAATTTTGAAGTTTCTTAGCTTTATGTGGAACCCCTTGTCATGGGTTATGGAAGCTGCAGCAGTTATGGCACTTGTCCTTGCTAATGGGGGAGGTGAGGGTCCTGACTGGCAAGACTTTGTTGGGATTATTGTCCTATTAATAATCAATTCAACAATTAGTTTCATAGAGGAGAATAATGCGCGAAATGCTGCATCAGCTCTTATGGAACGTTTATCTCCAAAGACAAGGATGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000325 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006725 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0006996 GO:0007033 GO:0007035 GO:0007275 GO:0008150 GO:0008152 GO:0008324 GO:0008553 GO:0009058 GO:0009506 GO:0009507 GO:0009536 GO:0009698 GO:0009699 GO:0009705 GO:0009791 GO:0009987 GO:0010023 GO:0010154 GO:0010214 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0015672 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0017144 GO:0018130 GO:0018958 GO:0019438 GO:0019725 GO:0019748 GO:0019829 GO:0022414 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030054 GO:0030641 GO:0031090 GO:0032501 GO:0032502 GO:0034220 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044237 GO:0044249 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0045851 GO:0046189 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055044 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805 GO:0099131 GO:0099132 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1902600
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

152

Amino Acids

16.73

Weight (kDa)

9.5

Isoelectric Point (pI)

53.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000545)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36571
pyrus_communis pycom02g01560 pycom08g10820 pycom09g05820 pycom13g21850 pycom14g16010
rosa_chinensis RchiOBHm_Chr2g0094861 RchiOBHm_Chr2g0124911 RchiOBHm_Chr2g0138581 RchiOBHm_Chr2g0160851 RchiOBHm_Chr4g0407411
rosa_laevigata RLG00000001652 RLG00000001872 RLG00000002037 RLG00000003076 RLG00000006419 RLG00000016771 RLG00000017383 RLG00000022851 RLG00000030563 RLG00000033869 RLG00000034176
rosa_multiflora Rmu_co8013424.1_g000001 Rmu_co8016716.1_g000001 Rmu_co8183472.1_g000001 Rmu_co8254047.1_g000001 Rmu_co8354891.1_g000001 Rmu_sc0000124.1_g000003 Rmu_sc0002132.1_g000027 Rmu_sc0003007.1_g000011 Rmu_sc0003221.1_g000096 Rmu_sc0003221.1_g000097 Rmu_sc0005119.1_g000004 Rmu_sc0008057.1_g000005 Rmu_sc0034532.1_g000001 Rmu_sc0036406.1_g000001 Rmu_ssc0000008.1_g000009
rosa_roxburghii Rroxscaffold_1G00030520 Rroxscaffold_2G00107360 Rroxscaffold_2G00153420 Rroxscaffold_5G00335750 Rroxscaffold_5G00351760 Rroxscaffold_5G00352080 Rroxscaffold_6G00419090
rosa_rugosa Rorug01G0341800 Rorug01G0341900 Rorug02G0180200 Rorug02G0180300 Rorug03G0186100 Rorug03G0186200 Rorug03G0284800 Rorug04G0104500 Rorug05G0246300 Rorug06G0108400 Rorug06G0471500 Rorug06G0510400
rosa_samantha Rh1AG159000 Rh1CG148200 Rh1CG189900 Rh2AG552800 Rh2BG473900 Rh2BG612100 Rh2BG612300 Rh2DG094500 Rh2DG482600 Rh3BG234000 Rh3CG320000 Rh4AG144200 Rh4BG127900 Rh4DG097300 Rh5AG128900 Rh5AG381200 Rh5BG363000 Rh5DG491900 Rh6AG048400 Rh6BG168100 Rh6CG005800 Rh6DG006000 Rh7AG255100 Rh7BG360600 Rh7CG271700 Rh7CG482300 Rh7DG451200
rosa_wichuraiana Rw4G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 65, 403
AciI CCGC 3 cut(s) 15, 40, 63
AclI AACGTT 1 cut(s) 430
AclWI GGATC 1 cut(s) 159
AcoI YGGCCR 1 cut(s) 9
AcsI RAATTY 1 cut(s) 222
AfiI CCNNNNNNNGG 1 cut(s) 261
AgsI TTSAA 2 cut(s) 229, 372
AjuI GAANNNNNNNTTGG 2 cut(s) 18, 50
AleI CACNNNNGTG 1 cut(s) 212
AluBI AGCT 5 cut(s) 135, 174, 240, 275, 419
AluI AGCT 5 cut(s) 135, 174, 240, 275, 419
AlwI GGATC 1 cut(s) 159
AoxI GGCC 2 cut(s) 9, 70
ApeKI GCWGC 4 cut(s) 174, 275, 278, 410
ApoI RAATTY 1 cut(s) 222
AseI ATTAAT 1 cut(s) 359
AspLEI GCGC 3 cut(s) 67, 84, 403
AspS9I GGNCC 2 cut(s) 70, 320
AsuHPI GGTGA 3 cut(s) 98, 226, 326
AvaII GGWCC 1 cut(s) 320
BbvI GCAGC 4 cut(s) 161, 262, 290, 397
BceAI ACGGC 1 cut(s) 57
BfaI CTAG 1 cut(s) 129
BfmI CTRYAG 1 cut(s) 276
BisI GCNGC 4 cut(s) 175, 276, 279, 411
BlsI GCNGC 4 cut(s) 176, 277, 280, 412
Bme18I GGWCC 1 cut(s) 320
BmgT120I GGNCC 2 cut(s) 70, 320
BmiI GGNNCC 3 cut(s) 126, 251, 321
BmsI GCATC 3 cut(s) 106, 202, 422
Bsc4I CCNNNNNNNGG 1 cut(s) 261
Bse118I RCCGGY 1 cut(s) 11
Bse1I ACTGG 1 cut(s) 332
BseGI GGATG 1 cut(s) 456
BseLI CCNNNNNNNGG 1 cut(s) 261
BseMII CTCAG 2 cut(s) 44, 224
BseNI ACTGG 1 cut(s) 332
BseRI GAGGAG 2 cut(s) 36, 404
BseXI GCAGC 4 cut(s) 161, 262, 290, 397
BsgI GTGCAG 1 cut(s) 161
Bsh1236I CGCG 2 cut(s) 65, 403
BshFI GGCC 2 cut(s) 11, 72
BsiSI CCGG 1 cut(s) 12
BslI CCNNNNNNNGG 1 cut(s) 261
BsmI GAATGC 1 cut(s) 102
BsnI GGCC 2 cut(s) 11, 72
Bsp143I GATC 2 cut(s) 89, 151
BspACI CCGC 3 cut(s) 15, 40, 63
BspANI GGCC 2 cut(s) 11, 72
BspCNI CTCAG 2 cut(s) 45, 223
BspFNI CGCG 2 cut(s) 65, 403
BspLI GGNNCC 3 cut(s) 126, 251, 321
BspMAI CTGCAG 1 cut(s) 280
BspPI GGATC 1 cut(s) 159
BsrFI RCCGGY 1 cut(s) 11
BsrI ACTGG 1 cut(s) 332
BssAI RCCGGY 1 cut(s) 11
BssMI GATC 2 cut(s) 89, 151
BstC8I GCNNGC 1 cut(s) 13
BstDEI CTNAG 4 cut(s) 53, 170, 210, 236
BstF5I GGATG 1 cut(s) 456
BstFNI CGCG 2 cut(s) 65, 403
BstHHI GCGC 3 cut(s) 67, 84, 403
BstKTI GATC 2 cut(s) 92, 154
BstMBI GATC 2 cut(s) 89, 151
BstMWI GCNNNNNNNGC 4 cut(s) 183, 287, 407, 416
BstSFI CTRYAG 1 cut(s) 276
BstUI CGCG 2 cut(s) 65, 403
BstV1I GCAGC 4 cut(s) 161, 262, 290, 397
BstX2I RGATCY 1 cut(s) 151
BstYI RGATCY 1 cut(s) 151
BsuRI GGCC 2 cut(s) 11, 72
BtgZI GCGATG 1 cut(s) 83
BtsCI GGATG 1 cut(s) 456
Cac8I GCNNGC 1 cut(s) 13
CfoI GCGC 3 cut(s) 67, 84, 403
Cfr10I RCCGGY 1 cut(s) 11
Cfr13I GGNCC 2 cut(s) 70, 320
CviAII CATG 1 cut(s) 261
CviJI RGCY 9 cut(s) 11, 59, 72, 127, 135, 174, 240, 275, 419
CviKI_1 RGCY 9 cut(s) 11, 59, 72, 127, 135, 174, 240, 275, 419
DdeI CTNAG 4 cut(s) 53, 170, 210, 236
DpnI GATC 2 cut(s) 91, 153
DpnII GATC 2 cut(s) 89, 151
EaeI YGGCCR 1 cut(s) 9
EciI GGCGGA 1 cut(s) 55
Eco47I GGWCC 1 cut(s) 320
EcoO109I RGGNCCY 1 cut(s) 320
FaeI CATG 1 cut(s) 264
FaiI YATR 6 cut(s) 245, 262, 269, 287, 386, 425
FalI AAGNNNNNCTT 4 cut(s) 18, 50, 138, 170
FatI CATG 1 cut(s) 260
Fnu4HI GCNGC 4 cut(s) 175, 276, 279, 411
Fsp4HI GCNGC 4 cut(s) 175, 276, 279, 411
FspBI CTAG 1 cut(s) 129
GlaI GCGC 3 cut(s) 66, 83, 402
GluI GCNGC 4 cut(s) 175, 276, 279, 411
HaeIII GGCC 2 cut(s) 11, 72
HapII CCGG 1 cut(s) 12
HhaI GCGC 3 cut(s) 67, 84, 403
Hin1II CATG 1 cut(s) 264
Hin6I GCGC 3 cut(s) 65, 82, 401
HinP1I GCGC 3 cut(s) 65, 82, 401
HindIII AAGCTT 1 cut(s) 133
HpaII CCGG 1 cut(s) 12
HphI GGTGA 3 cut(s) 98, 226, 326
Hpy166II GTNNAC 1 cut(s) 217
Hpy188I TCNGA 3 cut(s) 79, 94, 183
Hpy188III TCNNGA 1 cut(s) 323
Hpy8I GTNNAC 1 cut(s) 217
HpyAV CCTTC 1 cut(s) 20
HpyCH4IV ACGT 1 cut(s) 430
HpyCH4V TGCA 3 cut(s) 142, 278, 413
HpyF10VI GCNNNNNNNGC 4 cut(s) 183, 287, 407, 416
HpyF3I CTNAG 4 cut(s) 53, 170, 210, 236
HpySE526I ACGT 1 cut(s) 430
Hsp92II CATG 1 cut(s) 264
HspAI GCGC 3 cut(s) 65, 82, 401
KroI GCCGGC 1 cut(s) 11
KroNI GCCGGC 1 cut(s) 13
Kzo9I GATC 2 cut(s) 89, 151
LmnI GCTCC 3 cut(s) 42, 94, 124
LpnPI CCDG 6 cut(s) 25, 53, 100, 197, 313, 336
Lsp1109I GCAGC 4 cut(s) 161, 262, 290, 397
LweI GCATC 3 cut(s) 106, 202, 422
MaeI CTAG 1 cut(s) 129
MaeII ACGT 1 cut(s) 430
MalI GATC 2 cut(s) 91, 153
MboI GATC 2 cut(s) 89, 151
MboII GAAGA 1 cut(s) 188
MflI RGATCY 1 cut(s) 151
MluCI AATT 3 cut(s) 222, 367, 375
MnlI CCTC 6 cut(s) 14, 41, 142, 305, 310, 382
MroNI GCCGGC 1 cut(s) 11
MseI TTAA 2 cut(s) 359, 457
MslI CAYNNNNRTG 1 cut(s) 212
MspI CCGG 1 cut(s) 12
Mva1269I GAATGC 1 cut(s) 102
MvnI CGCG 2 cut(s) 65, 403
MwoI GCNNNNNNNGC 4 cut(s) 183, 287, 407, 416
NaeI GCCGGC 1 cut(s) 13
NdeII GATC 2 cut(s) 89, 151
NgoMIV GCCGGC 1 cut(s) 11
NlaIII CATG 1 cut(s) 264
NlaIV GGNNCC 3 cut(s) 126, 251, 321
OliI CACNNNNGTG 1 cut(s) 212
PctI GAATGC 1 cut(s) 102
PdiI GCCGGC 1 cut(s) 13
PkrI GCNGC 4 cut(s) 176, 277, 280, 412
PpuMI RGGWCCY 1 cut(s) 320
PshBI ATTAAT 1 cut(s) 359
Psp1406I AACGTT 1 cut(s) 430
Psp5II RGGWCCY 1 cut(s) 320
PspN4I GGNNCC 3 cut(s) 126, 251, 321
PspPI GGNCC 2 cut(s) 70, 320
PspPPI RGGWCCY 1 cut(s) 320
PstI CTGCAG 1 cut(s) 280
PsuI RGATCY 1 cut(s) 151
RseI CAYNNNNRTG 1 cut(s) 212
SaqAI TTAA 2 cut(s) 359, 457
SatI GCNGC 4 cut(s) 175, 276, 279, 411
Sau3AI GATC 2 cut(s) 89, 151
Sau96I GGNCC 2 cut(s) 70, 320
SetI ASST 8 cut(s) 137, 176, 216, 242, 277, 316, 421, 433
SfaNI GCATC 3 cut(s) 106, 202, 422
SfcI CTRYAG 1 cut(s) 276
SinI GGWCC 1 cut(s) 320
SmiMI CAYNNNNRTG 1 cut(s) 212
Sse9I AATT 3 cut(s) 222, 367, 375
SsiI CCGC 3 cut(s) 15, 40, 63
SspMI CTAG 1 cut(s) 129
TaiI ACGT 1 cut(s) 433
TasI AATT 3 cut(s) 222, 367, 375
Tru1I TTAA 2 cut(s) 359, 457
Tru9I TTAA 2 cut(s) 359, 457
TseI GCWGC 4 cut(s) 174, 275, 278, 410
TspDTI ATGAA 1 cut(s) 373
VpaK11BI GGWCC 1 cut(s) 320
VspI ATTAAT 1 cut(s) 359
XapI RAATTY 1 cut(s) 222
XspI CTAG 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.