Rorug06G0471500

Plasma membrane ATPase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000545
Physical Location & Seq
Forward (+)
59440519 .. 59443628
3110 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0471500.1

Sequence Viewer

Length: 825 bp
ATGGAGTCCCCAAAACCACCCTTGCTCTCCCTCTCCACCTTCATACACCACCACTGCCTCCGCCTCGCCGCCGACCTCTCCAGCCGCCTCGAAGACACCAAACGCCTCGCAGGAAACTTCCTGCCGCCGGCGACCAGGCGCCTGCTTTCCGCCCCGGGCACTCCGCCGCTGGCTTGGGTGGGCCAGCCGAACCACGCCTTGGCCGCCACCACCGCGACTCTGAGCTCCGACCACGTGGCGAAGAGCCTAGTCGGCACGGCGGTGTATACGGTTAGCAATGCGAACAATGAGTTCGTGCTTATCTCTGACCCCAGTGAAGCCAAGTCCATTGGCCTCCTTTGCTTCCGCAAAGAAGACGCCGAAGCCTTCCTCGCTCAGGTTCGGACTAGGACACGAGAGTTAAGAAGTCCGGTGAAGGTCGTCCCAATCACTCTTGACCAGGTGTACATGCTGAAGGTAGAAGGAATTGCATTTAGGTTTTTGCCTGATCCAGTTCAAATAAAGAATGCACTTGAGCTCAAAGCTGCGGACAGGAGTGCATTTGATGGAGTTCCTGTTTTTCAGTCCGACCTTCTGGTTGTGAAGAAGAAAAACAAGCGTTACTGCCCAATATATTTCACTAAGGAAGATATAGAAAAGGAATTGTCAAAGGTTTCCAGATCATCCCGAGGACCAGGGGTTTCTCAAAATATTATGGTTGGTAGTCTGGAAGATGTTTTGAGAAAAATGGAGTCAAGTGAGAAGAATTCGGGCTGGGAAGATCTGATTTTTATTCCACCTGGCAAAAGCTACTCCCAACACATTCAAGATGTGGTTAAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

274

Amino Acids

30.31

Weight (kDa)

9.26

Isoelectric Point (pI)

52.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tic22 PF04278 8 - 270 8.1e-113 Tic22-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000545)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36571
pyrus_communis pycom02g01560 pycom08g10820 pycom09g05820 pycom13g21850 pycom14g16010
rosa_chinensis RchiOBHm_Chr2g0094861 RchiOBHm_Chr2g0124911 RchiOBHm_Chr2g0138581 RchiOBHm_Chr2g0160851 RchiOBHm_Chr4g0407411
rosa_laevigata RLG00000001652 RLG00000001872 RLG00000002037 RLG00000003076 RLG00000006419 RLG00000016771 RLG00000017383 RLG00000022851 RLG00000030563 RLG00000033869 RLG00000034176
rosa_multiflora Rmu_co8013424.1_g000001 Rmu_co8016716.1_g000001 Rmu_co8183472.1_g000001 Rmu_co8254047.1_g000001 Rmu_co8354891.1_g000001 Rmu_sc0000124.1_g000003 Rmu_sc0002132.1_g000027 Rmu_sc0003007.1_g000011 Rmu_sc0003221.1_g000096 Rmu_sc0003221.1_g000097 Rmu_sc0005119.1_g000004 Rmu_sc0008057.1_g000005 Rmu_sc0034532.1_g000001 Rmu_sc0036406.1_g000001 Rmu_ssc0000008.1_g000009
rosa_roxburghii Rroxscaffold_1G00030520 Rroxscaffold_2G00107360 Rroxscaffold_2G00153420 Rroxscaffold_5G00335750 Rroxscaffold_5G00351760 Rroxscaffold_5G00352080 Rroxscaffold_6G00419090
rosa_rugosa Rorug01G0341800 Rorug01G0341900 Rorug02G0180200 Rorug02G0180300 Rorug03G0186100 Rorug03G0186200 Rorug03G0284800 Rorug04G0104500 Rorug05G0246300 Rorug06G0108400 Rorug06G0471500 Rorug06G0510400
rosa_samantha Rh1AG159000 Rh1CG148200 Rh1CG189900 Rh2AG552800 Rh2BG473900 Rh2BG612100 Rh2BG612300 Rh2DG094500 Rh2DG482600 Rh3BG234000 Rh3CG320000 Rh4AG144200 Rh4BG127900 Rh4DG097300 Rh5AG128900 Rh5AG381200 Rh5BG363000 Rh5DG491900 Rh6AG048400 Rh6BG168100 Rh6CG005800 Rh6DG006000 Rh7AG255100 Rh7BG360600 Rh7CG271700 Rh7CG482300 Rh7DG451200
rosa_wichuraiana Rw4G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 138
AccB7I CCANNNNNTGG 1 cut(s) 199
AccI GTMKAC 1 cut(s) 266
AccII CGCG 1 cut(s) 215
AclWI GGATC 1 cut(s) 482
AcoI YGGCCR 1 cut(s) 201
AcsI RAATTY 1 cut(s) 745
AcuI CTGAAG 1 cut(s) 473
AcvI CACGTG 1 cut(s) 235
AcyI GRCGYC 2 cut(s) 139, 357
AfaI GTAC 1 cut(s) 446
AfiI CCNNNNNNNGG 3 cut(s) 127, 199, 376
AgsI TTSAA 2 cut(s) 497, 806
AjnI CCWGG 4 cut(s) 134, 438, 673, 778
AjuI GAANNNNNNNTTGG 2 cut(s) 182, 214
AleI CACNNNNGTG 1 cut(s) 260
AluBI AGCT 4 cut(s) 225, 517, 524, 789
AluI AGCT 4 cut(s) 225, 517, 524, 789
Alw21I GWGCWC 2 cut(s) 227, 519
AlwI GGATC 1 cut(s) 482
Ama87I CYCGRG 2 cut(s) 154, 666
AoxI GGCC 3 cut(s) 181, 201, 331
ApeKI GCWGC 1 cut(s) 524
ApoI RAATTY 1 cut(s) 745
AspLEI GCGC 1 cut(s) 141
AspS9I GGNCC 2 cut(s) 181, 671
AsuC2I CCSGG 2 cut(s) 155, 156
AsuHPI GGTGA 1 cut(s) 424
AvaI CYCGRG 2 cut(s) 154, 666
AvaII GGWCC 1 cut(s) 671
BaeGI GKGCMC 1 cut(s) 161
BanI GGYRCC 1 cut(s) 138
BanII GRGCYC 2 cut(s) 227, 519
BauI CACGAG 1 cut(s) 393
BbrPI CACGTG 1 cut(s) 235
BbsI GAAGAC 2 cut(s) 99, 360
Bbv12I GWGCWC 2 cut(s) 227, 519
BbvI GCAGC 1 cut(s) 511
BccI CCATC 1 cut(s) 539
BceAI ACGGC 1 cut(s) 273
BciT130I CCWGG 4 cut(s) 136, 440, 675, 780
BcnI CCSGG 2 cut(s) 155, 156
BfaI CTAG 2 cut(s) 248, 387
BfoI RGCGCY 1 cut(s) 142
BglI GCCNNNNNGGC 1 cut(s) 252
BglII AGATCT 1 cut(s) 760
BisI GCNGC 6 cut(s) 69, 85, 125, 167, 204, 525
BlsI GCNGC 6 cut(s) 70, 86, 126, 168, 205, 526
Bme1390I CCNGG 6 cut(s) 136, 155, 156, 440, 675, 780
Bme18I GGWCC 1 cut(s) 671
BmeT110I CYCGRG 2 cut(s) 154, 666
BmgT120I GGNCC 2 cut(s) 181, 671
BmiI GGNNCC 1 cut(s) 140
BmrFI CCNGG 6 cut(s) 136, 155, 156, 440, 675, 780
BmrI ACTGGG 1 cut(s) 306
BmuI ACTGGG 1 cut(s) 306
BpiI GAAGAC 2 cut(s) 99, 360
BpmI CTGGAG 1 cut(s) 64
Bpu10I CCTNAGC 1 cut(s) 375
BpuEI CTTGAG 1 cut(s) 533
BpuMI CCSGG 2 cut(s) 155, 156
BsaAI YACGTR 1 cut(s) 235
BsaHI GRCGYC 2 cut(s) 139, 357
BsaJI CCNNGG 5 cut(s) 153, 154, 198, 667, 674
BsaWI WCCGGW 1 cut(s) 409
BsaXI ACNNNNNCTCC 2 cut(s) 540, 570
Bsc4I CCNNNNNNNGG 3 cut(s) 127, 199, 376
Bse118I RCCGGY 1 cut(s) 127
Bse1I ACTGG 2 cut(s) 312, 491
Bse3DI GCAATG 1 cut(s) 283
BseBI CCWGG 4 cut(s) 136, 440, 675, 780
BseDI CCNNGG 5 cut(s) 153, 154, 198, 667, 674
BseGI GGATG 1 cut(s) 662
BseLI CCNNNNNNNGG 3 cut(s) 127, 199, 376
BseMI GCAATG 1 cut(s) 283
BseMII CTCAG 2 cut(s) 212, 389
BseNI ACTGG 2 cut(s) 312, 491
BseSI GKGCMC 1 cut(s) 161
BseXI GCAGC 1 cut(s) 511
BseYI CCCAGC 1 cut(s) 753
Bsh1236I CGCG 1 cut(s) 215
BshFI GGCC 3 cut(s) 183, 203, 333
BshNI GGYRCC 1 cut(s) 138
BsiHKAI GWGCWC 2 cut(s) 227, 519
BsiHKCI CYCGRG 2 cut(s) 154, 666
BsiSI CCGG 3 cut(s) 128, 155, 410
BslFI GGGAC 1 cut(s) 407
BslI CCNNNNNNNGG 3 cut(s) 127, 199, 376
BsmFI GGGAC 1 cut(s) 407
BsmI GAATGC 1 cut(s) 511
BsnI GGCC 3 cut(s) 183, 203, 333
BsoBI CYCGRG 2 cut(s) 154, 666
Bsp1286I GDGCHC 3 cut(s) 161, 227, 519
Bsp1407I TGTACA 1 cut(s) 444
Bsp143I GATC 3 cut(s) 487, 659, 760
BspANI GGCC 3 cut(s) 183, 203, 333
BspCNI CTCAG 2 cut(s) 213, 388
BspFNI CGCG 1 cut(s) 215
BspLI GGNNCC 1 cut(s) 140
BspPI GGATC 1 cut(s) 482
BspQI GCTCTTC 1 cut(s) 236
BspT107I GGYRCC 1 cut(s) 138
BsrDI GCAATG 1 cut(s) 283
BsrFI RCCGGY 1 cut(s) 127
BsrGI TGTACA 1 cut(s) 444
BsrI ACTGG 2 cut(s) 312, 491
BssAI RCCGGY 1 cut(s) 127
BssECI CCNNGG 5 cut(s) 153, 154, 198, 667, 674
BssMI GATC 3 cut(s) 487, 659, 760
BssNAI GTATAC 1 cut(s) 267
BssNI GRCGYC 2 cut(s) 139, 357
BssSI CACGAG 1 cut(s) 393
BssT1I CCWWGG 1 cut(s) 198
Bst1107I GTATAC 1 cut(s) 267
Bst2BI CACGAG 1 cut(s) 393
Bst2UI CCWGG 4 cut(s) 136, 440, 675, 780
Bst4CI ACNGT 1 cut(s) 271
Bst6I CTCTTC 1 cut(s) 236
BstACI GRCGYC 2 cut(s) 139, 357
BstAUI TGTACA 1 cut(s) 444
BstBAI YACGTR 1 cut(s) 235
BstC8I GCNNGC 4 cut(s) 129, 143, 171, 185
BstDEI CTNAG 3 cut(s) 221, 375, 621
BstENI CCTNNNNNAGG 1 cut(s) 374
BstF5I GGATG 1 cut(s) 662
BstFNI CGCG 1 cut(s) 215
BstH2I RGCGCY 1 cut(s) 142
BstHHI GCGC 1 cut(s) 141
BstKTI GATC 3 cut(s) 490, 662, 763
BstMBI GATC 3 cut(s) 487, 659, 760
BstMWI GCNNNNNNNGC 5 cut(s) 203, 212, 252, 339, 371
BstNI CCWGG 4 cut(s) 136, 440, 675, 780
BstNSI RCATGY 1 cut(s) 451
BstSCI CCNGG 6 cut(s) 134, 153, 154, 438, 673, 778
BstSLI GKGCMC 1 cut(s) 161
BstUI CGCG 1 cut(s) 215
BstV1I GCAGC 1 cut(s) 511
BstV2I GAAGAC 2 cut(s) 99, 360
BstX2I RGATCY 1 cut(s) 760
BstYI RGATCY 1 cut(s) 760
BstZ17I GTATAC 1 cut(s) 267
BsuRI GGCC 3 cut(s) 183, 203, 333
BtsCI GGATG 1 cut(s) 662
BtsI GCAGTG 1 cut(s) 52
BtsIMutI CAGTG 2 cut(s) 52, 319
Cac8I GCNNGC 4 cut(s) 129, 143, 171, 185
CfoI GCGC 1 cut(s) 141
Cfr10I RCCGGY 1 cut(s) 127
Cfr13I GGNCC 2 cut(s) 181, 671
Cfr9I CCCGGG 1 cut(s) 154
CseI GACGC 1 cut(s) 365
CsiI ACCWGGT 1 cut(s) 438
Csp6I GTAC 1 cut(s) 445
CviAII CATG 1 cut(s) 448
CviQI GTAC 1 cut(s) 445
DdeI CTNAG 3 cut(s) 221, 375, 621
DinI GGCGCC 1 cut(s) 140
DpnI GATC 3 cut(s) 489, 661, 762
DpnII GATC 3 cut(s) 487, 659, 760
EaeI YGGCCR 1 cut(s) 201
Eam1104I CTCTTC 1 cut(s) 236
EarI CTCTTC 1 cut(s) 236
EciI GGCGGA 3 cut(s) 50, 139, 153
Ecl136II GAGCTC 2 cut(s) 225, 517
Eco130I CCWWGG 1 cut(s) 198
Eco24I GRGCYC 2 cut(s) 227, 519
Eco47I GGWCC 1 cut(s) 671
Eco53kI GAGCTC 2 cut(s) 225, 517
Eco57I CTGAAG 1 cut(s) 473
Eco72I CACGTG 1 cut(s) 235
Eco88I CYCGRG 2 cut(s) 154, 666
EcoICRI GAGCTC 2 cut(s) 225, 517
EcoNI CCTNNNNNAGG 1 cut(s) 374
EcoRI GAATTC 1 cut(s) 745
EcoRII CCWGG 4 cut(s) 134, 438, 673, 778
EcoT14I CCWWGG 1 cut(s) 198
EcoT38I GRGCYC 2 cut(s) 227, 519
EgeI GGCGCC 1 cut(s) 140
EheI GGCGCC 1 cut(s) 140
ErhI CCWWGG 1 cut(s) 198
FaeI CATG 1 cut(s) 451
FaiI YATR 6 cut(s) 44, 267, 449, 613, 632, 695
FaqI GGGAC 1 cut(s) 407
FatI CATG 1 cut(s) 447
FblI GTMKAC 1 cut(s) 266
Fnu4HI GCNGC 6 cut(s) 69, 85, 125, 167, 204, 525
FokI GGATG 1 cut(s) 649
FriOI GRGCYC 2 cut(s) 227, 519
Fsp4HI GCNGC 6 cut(s) 69, 85, 125, 167, 204, 525
FspBI CTAG 2 cut(s) 248, 387
GlaI GCGC 1 cut(s) 140
GluI GCNGC 6 cut(s) 69, 85, 125, 167, 204, 525
GsaI CCCAGC 1 cut(s) 757
GsuI CTGGAG 1 cut(s) 64
HaeII RGCGCY 1 cut(s) 142
HaeIII GGCC 3 cut(s) 183, 203, 333
HapII CCGG 3 cut(s) 128, 155, 410
HgaI GACGC 1 cut(s) 365
HhaI GCGC 1 cut(s) 141
Hin1I GRCGYC 2 cut(s) 139, 357
Hin1II CATG 1 cut(s) 451
Hin6I GCGC 1 cut(s) 139
HinP1I GCGC 1 cut(s) 139
HinfI GANTC 3 cut(s) 5, 217, 731
HpaII CCGG 3 cut(s) 128, 155, 410
HphI GGTGA 1 cut(s) 424
Hpy166II GTNNAC 2 cut(s) 267, 445
Hpy188I TCNGA 6 cut(s) 222, 229, 307, 384, 568, 765
Hpy188III TCNNGA 5 cut(s) 434, 657, 666, 707, 806
Hpy8I GTNNAC 2 cut(s) 267, 445
HpyAV CCTTC 6 cut(s) 49, 376, 409, 448, 455, 581
HpyCH4III ACNGT 1 cut(s) 271
HpyCH4IV ACGT 1 cut(s) 234
HpyCH4V TGCA 3 cut(s) 470, 509, 539
HpyF10VI GCNNNNNNNGC 5 cut(s) 203, 212, 252, 339, 371
HpyF3I CTNAG 3 cut(s) 221, 375, 621
HpySE526I ACGT 1 cut(s) 234
Hsp92I GRCGYC 2 cut(s) 139, 357
Hsp92II CATG 1 cut(s) 451
HspAI GCGC 1 cut(s) 139
KasI GGCGCC 1 cut(s) 138
KroI GCCGGC 1 cut(s) 127
KroNI GCCGGC 1 cut(s) 129
Kzo9I GATC 3 cut(s) 487, 659, 760
LguI GCTCTTC 1 cut(s) 236
LmnI GCTCC 1 cut(s) 230
Lsp1109I GCAGC 1 cut(s) 511
MabI ACCWGGT 1 cut(s) 438
MaeI CTAG 2 cut(s) 248, 387
MaeII ACGT 1 cut(s) 234
MaeIII GTNAC 1 cut(s) 599
MalI GATC 3 cut(s) 489, 661, 762
MboI GATC 3 cut(s) 487, 659, 760
MboII GAAGA 9 cut(s) 104, 253, 365, 595, 598, 638, 722, 754, 770
MflI RGATCY 1 cut(s) 760
MhlI GDGCHC 3 cut(s) 161, 227, 519
MluCI AATT 3 cut(s) 465, 641, 745
Mly113I GGCGCC 1 cut(s) 139
MlyI GAGTC 3 cut(s) 14, 211, 740
MmeI TCCRAC 2 cut(s) 252, 591
MnlI CCTC 9 cut(s) 41, 68, 74, 86, 98, 116, 344, 380, 662
MreI CGCCGGCG 1 cut(s) 127
MroNI GCCGGC 1 cut(s) 127
MseI TTAA 2 cut(s) 401, 816
MslI CAYNNNNRTG 1 cut(s) 260
MspA1I CMGCKG 1 cut(s) 169
MspI CCGG 3 cut(s) 128, 155, 410
MspR9I CCNGG 6 cut(s) 136, 155, 156, 440, 675, 780
Mva1269I GAATGC 1 cut(s) 511
MvaI CCWGG 4 cut(s) 136, 440, 675, 780
MvnI CGCG 1 cut(s) 215
MwoI GCNNNNNNNGC 5 cut(s) 203, 212, 252, 339, 371
NaeI GCCGGC 1 cut(s) 129
NarI GGCGCC 1 cut(s) 139
NciI CCSGG 2 cut(s) 155, 156
NdeII GATC 3 cut(s) 487, 659, 760
NgoMIV GCCGGC 1 cut(s) 127
NlaIII CATG 1 cut(s) 451
NlaIV GGNNCC 1 cut(s) 140
NspI RCATGY 1 cut(s) 451
OliI CACNNNNGTG 1 cut(s) 260
PciSI GCTCTTC 1 cut(s) 236
PctI GAATGC 1 cut(s) 511
PdiI GCCGGC 1 cut(s) 129
PflMI CCANNNNNTGG 1 cut(s) 199
PkrI GCNGC 6 cut(s) 70, 86, 126, 168, 205, 526
PleI GAGTC 3 cut(s) 13, 211, 739
PluTI GGCGCC 1 cut(s) 142
PmaCI CACGTG 1 cut(s) 235
PmlI CACGTG 1 cut(s) 235
PpsI GAGTC 3 cut(s) 13, 211, 739
Ppu21I YACGTR 1 cut(s) 235
Psp124BI GAGCTC 2 cut(s) 227, 519
Psp6I CCWGG 4 cut(s) 134, 438, 673, 778
PspCI CACGTG 1 cut(s) 235
PspFI CCCAGC 1 cut(s) 753
PspGI CCWGG 4 cut(s) 134, 438, 673, 778
PspN4I GGNNCC 1 cut(s) 140
PspPI GGNCC 2 cut(s) 181, 671
PsuI RGATCY 1 cut(s) 760
RsaI GTAC 1 cut(s) 446
RsaNI GTAC 1 cut(s) 445
RseI CAYNNNNRTG 1 cut(s) 260
SacI GAGCTC 2 cut(s) 227, 519
SapI GCTCTTC 1 cut(s) 236
SaqAI TTAA 2 cut(s) 401, 816
SatI GCNGC 6 cut(s) 69, 85, 125, 167, 204, 525
Sau3AI GATC 3 cut(s) 487, 659, 760
Sau96I GGNCC 2 cut(s) 181, 671
SchI GAGTC 3 cut(s) 14, 211, 740
ScrFI CCNGG 6 cut(s) 136, 155, 156, 440, 675, 780
SduI GDGCHC 3 cut(s) 161, 227, 519
SexAI ACCWGGT 1 cut(s) 438
SfoI GGCGCC 1 cut(s) 140
SgrAI CRCCGGYG 1 cut(s) 127
SinI GGWCC 1 cut(s) 671
SmaI CCCGGG 1 cut(s) 156
SmiMI CAYNNNNRTG 1 cut(s) 260
SmlI CTYRAG 1 cut(s) 512
SmoI CTYRAG 1 cut(s) 512
Sse9I AATT 3 cut(s) 465, 641, 745
SspDI GGCGCC 1 cut(s) 138
SspI AATATT 1 cut(s) 691
SspMI CTAG 2 cut(s) 248, 387
SstI GAGCTC 2 cut(s) 227, 519
StyD4I CCNGG 6 cut(s) 134, 153, 154, 438, 673, 778
StyI CCWWGG 1 cut(s) 198
TaaI ACNGT 1 cut(s) 271
TaiI ACGT 1 cut(s) 237
TaqI TCGA 1 cut(s) 90
TasI AATT 3 cut(s) 465, 641, 745
TatI WGTACW 1 cut(s) 444
TauI GCSGC 5 cut(s) 71, 87, 127, 169, 206
Tru1I TTAA 2 cut(s) 401, 816
Tru9I TTAA 2 cut(s) 401, 816
TscAI CASTG 2 cut(s) 59, 319
TseI GCWGC 1 cut(s) 524
TspDTI ATGAA 1 cut(s) 31
TspMI CCCGGG 1 cut(s) 154
TspRI CASTG 2 cut(s) 59, 319
Van91I CCANNNNNTGG 1 cut(s) 199
VpaK11BI GGWCC 1 cut(s) 671
XagI CCTNNNNNAGG 1 cut(s) 374
XapI RAATTY 1 cut(s) 745
XceI RCATGY 1 cut(s) 451
XmaI CCCGGG 1 cut(s) 154
XmiI GTMKAC 1 cut(s) 266
XspI CTAG 2 cut(s) 248, 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.