FvH4_3g36571

Plasma membrane ATPase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000545
Physical Location & Seq
Forward (+)
31321006 .. 31321504
499 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g36571.t1

Sequence Viewer

Length: 411 bp
ATGGAAGCTGCTGCCTTGATGGCTATTGTGTTGGCAAATGGTGATGGAAAGCCTCCAGATTGGCAGGATTTTCTCGGAATTACGGTCCTGCTGATCGTTAACTCTACCATCAGCTTTATTGAAGAAAACAATGCTGGTAATGCGGCTGCTGCACTTATGGCTGGTCTTGCTCCTAAAACTAAGGTCCTCAGAGACGGTCGATGGACTGAGCAAGATGCTTCAATTTTGGTTCCAGGAGACATAATCAGCATTAAGTTGGGAGATATAGTGCCTGCTGATGCTCGCCTTCTTGAGGGTGATCCTCTCAAGATTGACCCAACTCGCATCAAATTGCTTCTTCATTTCACCCAACTGGAATTGGGTTTCCTTCAATTTTGTGAATTTCAAAATCATGGATTCACCTTTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

137

Amino Acids

14.76

Weight (kDa)

4.61

Isoelectric Point (pI)

25.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
E1-E2_ATPase PF00122 57 - 103 6.4e-11 P-type ATPase actuator domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000545)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36571
pyrus_communis pycom02g01560 pycom08g10820 pycom09g05820 pycom13g21850 pycom14g16010
rosa_chinensis RchiOBHm_Chr2g0094861 RchiOBHm_Chr2g0124911 RchiOBHm_Chr2g0138581 RchiOBHm_Chr2g0160851 RchiOBHm_Chr4g0407411
rosa_laevigata RLG00000001652 RLG00000001872 RLG00000002037 RLG00000003076 RLG00000006419 RLG00000016771 RLG00000017383 RLG00000022851 RLG00000030563 RLG00000033869 RLG00000034176
rosa_multiflora Rmu_co8013424.1_g000001 Rmu_co8016716.1_g000001 Rmu_co8183472.1_g000001 Rmu_co8254047.1_g000001 Rmu_co8354891.1_g000001 Rmu_sc0000124.1_g000003 Rmu_sc0002132.1_g000027 Rmu_sc0003007.1_g000011 Rmu_sc0003221.1_g000096 Rmu_sc0003221.1_g000097 Rmu_sc0005119.1_g000004 Rmu_sc0008057.1_g000005 Rmu_sc0034532.1_g000001 Rmu_sc0036406.1_g000001 Rmu_ssc0000008.1_g000009
rosa_roxburghii Rroxscaffold_1G00030520 Rroxscaffold_2G00107360 Rroxscaffold_2G00153420 Rroxscaffold_5G00335750 Rroxscaffold_5G00351760 Rroxscaffold_5G00352080 Rroxscaffold_6G00419090
rosa_rugosa Rorug01G0341800 Rorug01G0341900 Rorug02G0180200 Rorug02G0180300 Rorug03G0186100 Rorug03G0186200 Rorug03G0284800 Rorug04G0104500 Rorug05G0246300 Rorug06G0108400 Rorug06G0471500 Rorug06G0510400
rosa_samantha Rh1AG159000 Rh1CG148200 Rh1CG189900 Rh2AG552800 Rh2BG473900 Rh2BG612100 Rh2BG612300 Rh2DG094500 Rh2DG482600 Rh3BG234000 Rh3CG320000 Rh4AG144200 Rh4BG127900 Rh4DG097300 Rh5AG128900 Rh5AG381200 Rh5BG363000 Rh5DG491900 Rh6AG048400 Rh6BG168100 Rh6CG005800 Rh6DG006000 Rh7AG255100 Rh7BG360600 Rh7CG271700 Rh7CG482300 Rh7DG451200
rosa_wichuraiana Rw4G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 143
AclWI GGATC 1 cut(s) 293
AcsI RAATTY 1 cut(s) 380
AfiI CCNNNNNNNGG 1 cut(s) 292
AgsI TTSAA 4 cut(s) 122, 222, 371, 386
AjnI CCWGG 1 cut(s) 232
AluBI AGCT 2 cut(s) 8, 114
AluI AGCT 2 cut(s) 8, 114
Alw26I GTCTC 2 cut(s) 186, 231
AlwI GGATC 1 cut(s) 293
ApeKI GCWGC 4 cut(s) 8, 11, 146, 149
ApoI RAATTY 1 cut(s) 380
AspS9I GGNCC 2 cut(s) 85, 184
AsuHPI GGTGA 4 cut(s) 53, 308, 337, 391
AvaII GGWCC 2 cut(s) 85, 184
BbvI GCAGC 2 cut(s) 133, 136
BccI CCATC 4 cut(s) 13, 38, 116, 195
BciT130I CCWGG 1 cut(s) 234
BcoDI GTCTC 2 cut(s) 186, 231
BglI GCCNNNNNGGC 1 cut(s) 20
BisI GCNGC 5 cut(s) 9, 12, 144, 147, 150
BlsI GCNGC 5 cut(s) 10, 13, 145, 148, 151
Bme1390I CCNGG 1 cut(s) 234
Bme18I GGWCC 2 cut(s) 85, 184
BmgT120I GGNCC 2 cut(s) 85, 184
BmiI GGNNCC 1 cut(s) 231
BmrFI CCNGG 1 cut(s) 234
BmsI GCATC 3 cut(s) 205, 268, 333
BpmI CTGGAG 1 cut(s) 39
BpuEI CTTGAG 2 cut(s) 290, 311
BsaXI ACNNNNNCTCC 2 cut(s) 252, 282
Bsc4I CCNNNNNNNGG 1 cut(s) 292
Bse1I ACTGG 1 cut(s) 357
BseBI CCWGG 1 cut(s) 234
BseLI CCNNNNNNNGG 1 cut(s) 292
BseMII CTCAG 2 cut(s) 198, 202
BseNI ACTGG 1 cut(s) 357
BseXI GCAGC 2 cut(s) 133, 136
BsgI GTGCAG 1 cut(s) 135
Bsh1285I CGRYCG 1 cut(s) 199
BsiEI CGRYCG 1 cut(s) 199
BslI CCNNNNNNNGG 1 cut(s) 292
BsmAI GTCTC 2 cut(s) 186, 231
BsmBI CGTCTC 1 cut(s) 186
Bsp143I GATC 2 cut(s) 93, 298
BspACI CCGC 1 cut(s) 143
BspCNI CTCAG 2 cut(s) 199, 201
BspLI GGNNCC 1 cut(s) 231
BspPI GGATC 1 cut(s) 293
BsrI ACTGG 1 cut(s) 357
BssMI GATC 2 cut(s) 93, 298
Bst2UI CCWGG 1 cut(s) 234
Bst4CI ACNGT 2 cut(s) 85, 197
BstC8I GCNNGC 2 cut(s) 273, 283
BstDEI CTNAG 3 cut(s) 180, 188, 207
BstENI CCTNNNNNAGG 1 cut(s) 290
BstKTI GATC 2 cut(s) 96, 301
BstMAI GTCTC 2 cut(s) 186, 231
BstMBI GATC 2 cut(s) 93, 298
BstMCI CGRYCG 1 cut(s) 199
BstMWI GCNNNNNNNGC 5 cut(s) 20, 140, 149, 158, 167
BstNI CCWGG 1 cut(s) 234
BstSCI CCNGG 1 cut(s) 232
BstV1I GCAGC 2 cut(s) 133, 136
Cac8I GCNNGC 2 cut(s) 273, 283
Cfr13I GGNCC 2 cut(s) 85, 184
CviAII CATG 1 cut(s) 392
CviJI RGCY 6 cut(s) 8, 23, 52, 114, 146, 161
CviKI_1 RGCY 6 cut(s) 8, 23, 52, 114, 146, 161
DdeI CTNAG 3 cut(s) 180, 188, 207
DpnI GATC 2 cut(s) 95, 300
DpnII GATC 2 cut(s) 93, 298
Eco47I GGWCC 2 cut(s) 85, 184
EcoNI CCTNNNNNAGG 1 cut(s) 290
EcoO109I RGGNCCY 1 cut(s) 184
EcoRII CCWGG 1 cut(s) 232
Esp3I CGTCTC 1 cut(s) 186
FaeI CATG 1 cut(s) 395
FaiI YATR 4 cut(s) 158, 242, 266, 393
FatI CATG 1 cut(s) 391
Fnu4HI GCNGC 5 cut(s) 9, 12, 144, 147, 150
Fsp4HI GCNGC 5 cut(s) 9, 12, 144, 147, 150
GluI GCNGC 5 cut(s) 9, 12, 144, 147, 150
GsuI CTGGAG 1 cut(s) 39
Hin1II CATG 1 cut(s) 395
HincII GTYRAC 1 cut(s) 100
HindII GTYRAC 1 cut(s) 100
HinfI GANTC 1 cut(s) 396
HpaI GTTAAC 1 cut(s) 100
HphI GGTGA 4 cut(s) 53, 308, 337, 391
Hpy166II GTNNAC 1 cut(s) 100
Hpy188I TCNGA 3 cut(s) 77, 191, 410
Hpy188III TCNNGA 3 cut(s) 56, 290, 307
Hpy8I GTNNAC 1 cut(s) 100
HpyAV CCTTC 2 cut(s) 296, 377
HpyCH4III ACNGT 2 cut(s) 85, 197
HpyCH4V TGCA 1 cut(s) 152
HpyF10VI GCNNNNNNNGC 5 cut(s) 20, 140, 149, 158, 167
HpyF3I CTNAG 3 cut(s) 180, 188, 207
Hsp92II CATG 1 cut(s) 395
KspAI GTTAAC 1 cut(s) 100
Kzo9I GATC 2 cut(s) 93, 298
LmnI GCTCC 1 cut(s) 175
LpnPI CCDG 9 cut(s) 50, 69, 101, 120, 147, 219, 246, 285, 338
Lsp1109I GCAGC 2 cut(s) 133, 136
LweI GCATC 3 cut(s) 205, 268, 333
MalI GATC 2 cut(s) 95, 300
MboI GATC 2 cut(s) 93, 298
MboII GAAGA 2 cut(s) 134, 329
MluCI AATT 6 cut(s) 78, 222, 329, 356, 371, 380
MnlI CCTC 4 cut(s) 63, 197, 286, 312
MseI TTAA 2 cut(s) 99, 252
MspR9I CCNGG 1 cut(s) 234
MvaI CCWGG 1 cut(s) 234
MwoI GCNNNNNNNGC 5 cut(s) 20, 140, 149, 158, 167
NdeII GATC 2 cut(s) 93, 298
NlaIII CATG 1 cut(s) 395
NlaIV GGNNCC 1 cut(s) 231
PfeI GAWTC 1 cut(s) 396
PfoI TCCNGGA 1 cut(s) 232
PkrI GCNGC 5 cut(s) 10, 13, 145, 148, 151
PpuMI RGGWCCY 1 cut(s) 184
Psp5II RGGWCCY 1 cut(s) 184
Psp6I CCWGG 1 cut(s) 232
PspGI CCWGG 1 cut(s) 232
PspN4I GGNNCC 1 cut(s) 231
PspPI GGNCC 2 cut(s) 85, 184
PspPPI RGGWCCY 1 cut(s) 184
SaqAI TTAA 2 cut(s) 99, 252
SatI GCNGC 5 cut(s) 9, 12, 144, 147, 150
Sau3AI GATC 2 cut(s) 93, 298
Sau96I GGNCC 2 cut(s) 85, 184
ScrFI CCNGG 1 cut(s) 234
SetI ASST 4 cut(s) 10, 116, 186, 404
SfaNI GCATC 3 cut(s) 205, 268, 333
SinI GGWCC 2 cut(s) 85, 184
SmlI CTYRAG 2 cut(s) 290, 305
SmoI CTYRAG 2 cut(s) 290, 305
Sse9I AATT 6 cut(s) 78, 222, 329, 356, 371, 380
SsiI CCGC 1 cut(s) 143
StyD4I CCNGG 1 cut(s) 232
TaaI ACNGT 2 cut(s) 85, 197
TaqI TCGA 1 cut(s) 199
TasI AATT 6 cut(s) 78, 222, 329, 356, 371, 380
TauI GCSGC 1 cut(s) 146
TfiI GAWTC 1 cut(s) 396
Tru1I TTAA 2 cut(s) 99, 252
Tru9I TTAA 2 cut(s) 99, 252
TseI GCWGC 4 cut(s) 8, 11, 146, 149
TspDTI ATGAA 1 cut(s) 329
VpaK11BI GGWCC 2 cut(s) 85, 184
XagI CCTNNNNNAGG 1 cut(s) 290
XapI RAATTY 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.