RchiOBHm_Chr2g0160851

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000545
Physical Location & Seq
Reverse (-)
76776734 .. 76778165
1432 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52925

Sequence Viewer

Length: 135 bp
ATGAGAAGAGCAGTGTTTGGTATAACTGAGATCCTCAAGCTAGTAAGAAGGCTTTATAGACTCATTCTAGATTCTGCAAAAGAGAGGGAAAATATTGATGGGCGCACTATTTTATGCTTCTGCTGGCATATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

44

Amino Acids

5.34

Weight (kDa)

9.83

Isoelectric Point (pI)

71.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000545)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36571
pyrus_communis pycom02g01560 pycom08g10820 pycom09g05820 pycom13g21850 pycom14g16010
rosa_chinensis RchiOBHm_Chr2g0094861 RchiOBHm_Chr2g0124911 RchiOBHm_Chr2g0138581 RchiOBHm_Chr2g0160851 RchiOBHm_Chr4g0407411
rosa_laevigata RLG00000001652 RLG00000001872 RLG00000002037 RLG00000003076 RLG00000006419 RLG00000016771 RLG00000017383 RLG00000022851 RLG00000030563 RLG00000033869 RLG00000034176
rosa_multiflora Rmu_co8013424.1_g000001 Rmu_co8016716.1_g000001 Rmu_co8183472.1_g000001 Rmu_co8254047.1_g000001 Rmu_co8354891.1_g000001 Rmu_sc0000124.1_g000003 Rmu_sc0002132.1_g000027 Rmu_sc0003007.1_g000011 Rmu_sc0003221.1_g000096 Rmu_sc0003221.1_g000097 Rmu_sc0005119.1_g000004 Rmu_sc0008057.1_g000005 Rmu_sc0034532.1_g000001 Rmu_sc0036406.1_g000001 Rmu_ssc0000008.1_g000009
rosa_roxburghii Rroxscaffold_1G00030520 Rroxscaffold_2G00107360 Rroxscaffold_2G00153420 Rroxscaffold_5G00335750 Rroxscaffold_5G00351760 Rroxscaffold_5G00352080 Rroxscaffold_6G00419090
rosa_rugosa Rorug01G0341800 Rorug01G0341900 Rorug02G0180200 Rorug02G0180300 Rorug03G0186100 Rorug03G0186200 Rorug03G0284800 Rorug04G0104500 Rorug05G0246300 Rorug06G0108400 Rorug06G0471500 Rorug06G0510400
rosa_samantha Rh1AG159000 Rh1CG148200 Rh1CG189900 Rh2AG552800 Rh2BG473900 Rh2BG612100 Rh2BG612300 Rh2DG094500 Rh2DG482600 Rh3BG234000 Rh3CG320000 Rh4AG144200 Rh4BG127900 Rh4DG097300 Rh5AG128900 Rh5AG381200 Rh5BG363000 Rh5DG491900 Rh6AG048400 Rh6BG168100 Rh6CG005800 Rh6DG006000 Rh7AG255100 Rh7BG360600 Rh7CG271700 Rh7CG482300 Rh7DG451200
rosa_wichuraiana Rw4G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 25
AluBI AGCT 1 cut(s) 40
AluI AGCT 1 cut(s) 40
AlwI GGATC 1 cut(s) 25
AspLEI GCGC 1 cut(s) 105
BccI CCATC 1 cut(s) 92
BfaI CTAG 2 cut(s) 41, 68
BpuEI CTTGAG 1 cut(s) 20
BseMII CTCAG 1 cut(s) 18
Bsp143I GATC 1 cut(s) 30
BspCNI CTCAG 1 cut(s) 19
BspPI GGATC 1 cut(s) 25
BssMI GATC 1 cut(s) 30
BstC8I GCNNGC 1 cut(s) 125
BstDEI CTNAG 1 cut(s) 27
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 1 cut(s) 33
BstMBI GATC 1 cut(s) 30
BstX2I RGATCY 1 cut(s) 30
BstYI RGATCY 1 cut(s) 30
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 1 cut(s) 18
Cac8I GCNNGC 1 cut(s) 125
CfoI GCGC 1 cut(s) 105
CviJI RGCY 2 cut(s) 40, 52
CviKI_1 RGCY 2 cut(s) 40, 52
DdeI CTNAG 1 cut(s) 27
DpnI GATC 1 cut(s) 32
DpnII GATC 1 cut(s) 30
FaiI YATR 5 cut(s) 23, 57, 115, 129, 131
FauNDI CATATG 1 cut(s) 129
FspBI CTAG 2 cut(s) 41, 68
FspEI CC 8 cut(s) 3, 34, 47, 70, 71, 84, 85, 109
GlaI GCGC 1 cut(s) 104
HhaI GCGC 1 cut(s) 105
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HinfI GANTC 2 cut(s) 60, 71
Hpy188III TCNNGA 1 cut(s) 68
HpyAV CCTTC 1 cut(s) 42
HpyCH4V TGCA 1 cut(s) 77
HpyF3I CTNAG 1 cut(s) 27
HspAI GCGC 1 cut(s) 103
Kzo9I GATC 1 cut(s) 30
LpnPI CCDG 1 cut(s) 109
MaeI CTAG 2 cut(s) 41, 68
MalI GATC 1 cut(s) 32
MboI GATC 1 cut(s) 30
MboII GAAGA 1 cut(s) 18
MflI RGATCY 1 cut(s) 30
MlyI GAGTC 1 cut(s) 54
MnlI CCTC 2 cut(s) 44, 78
NdeI CATATG 1 cut(s) 129
NdeII GATC 1 cut(s) 30
PfeI GAWTC 1 cut(s) 71
PleI GAGTC 1 cut(s) 54
PpsI GAGTC 1 cut(s) 54
PsuI RGATCY 1 cut(s) 30
Sau3AI GATC 1 cut(s) 30
SchI GAGTC 1 cut(s) 54
SetI ASST 1 cut(s) 42
SgeI CNNG 3 cut(s) 49, 53, 80
SmlI CTYRAG 1 cut(s) 35
SmoI CTYRAG 1 cut(s) 35
SspI AATATT 1 cut(s) 94
SspMI CTAG 2 cut(s) 41, 68
TfiI GAWTC 1 cut(s) 71
TscAI CASTG 1 cut(s) 18
TspRI CASTG 1 cut(s) 18
XbaI TCTAGA 1 cut(s) 67
XspI CTAG 2 cut(s) 41, 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.