Rh4DG097300

ATPase 11, plasma

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000545
Physical Location & Seq
Forward (+)
14633726 .. 14634737
1012 bp
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UTR
Exon/CDS
Intron
Rh4DG097300.1

Sequence Viewer

Length: 343 bp
ATGGCGGAGGAGAAGCCTGAAGTGCTTGACGCGGTGCTGAAGGAAACAATTGATTTGGAAAACATACCCATTGAGGAGCTTGAGGAAAAGCAGGGGAAGCCTCCTGACTGGCAAGATTTTGTGGTTATTATTACTCTGCTGGTCATCAACTCCACCATTAGTTTCATCAAGGAAAATAATGCCGGTAATGCTGCAGCAGCTCTCATGGCTCGTCTTGCTCCTAAAGCCAAGCCTTATCAGAGGTCTGGAAGCGGTCGTAGGCAACAACAATTTGATATCTTCCCCATTTTCGATCCGGTGTCTCCGCCCATTACTCCCTATCTCTATCATTCAATTCTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

114

Amino Acids

12.79

Weight (kDa)

4.8

Isoelectric Point (pI)

57.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000545)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36571
pyrus_communis pycom02g01560 pycom08g10820 pycom09g05820 pycom13g21850 pycom14g16010
rosa_chinensis RchiOBHm_Chr2g0094861 RchiOBHm_Chr2g0124911 RchiOBHm_Chr2g0138581 RchiOBHm_Chr2g0160851 RchiOBHm_Chr4g0407411
rosa_laevigata RLG00000001652 RLG00000001872 RLG00000002037 RLG00000003076 RLG00000006419 RLG00000016771 RLG00000017383 RLG00000022851 RLG00000030563 RLG00000033869 RLG00000034176
rosa_multiflora Rmu_co8013424.1_g000001 Rmu_co8016716.1_g000001 Rmu_co8183472.1_g000001 Rmu_co8254047.1_g000001 Rmu_co8354891.1_g000001 Rmu_sc0000124.1_g000003 Rmu_sc0002132.1_g000027 Rmu_sc0003007.1_g000011 Rmu_sc0003221.1_g000096 Rmu_sc0003221.1_g000097 Rmu_sc0005119.1_g000004 Rmu_sc0008057.1_g000005 Rmu_sc0034532.1_g000001 Rmu_sc0036406.1_g000001 Rmu_ssc0000008.1_g000009
rosa_roxburghii Rroxscaffold_1G00030520 Rroxscaffold_2G00107360 Rroxscaffold_2G00153420 Rroxscaffold_5G00335750 Rroxscaffold_5G00351760 Rroxscaffold_5G00352080 Rroxscaffold_6G00419090
rosa_rugosa Rorug01G0341800 Rorug01G0341900 Rorug02G0180200 Rorug02G0180300 Rorug03G0186100 Rorug03G0186200 Rorug03G0284800 Rorug04G0104500 Rorug05G0246300 Rorug06G0108400 Rorug06G0471500 Rorug06G0510400
rosa_samantha Rh1AG159000 Rh1CG148200 Rh1CG189900 Rh2AG552800 Rh2BG473900 Rh2BG612100 Rh2BG612300 Rh2DG094500 Rh2DG482600 Rh3BG234000 Rh3CG320000 Rh4AG144200 Rh4BG127900 Rh4DG097300 Rh5AG128900 Rh5AG381200 Rh5BG363000 Rh5DG491900 Rh6AG048400 Rh6BG168100 Rh6CG005800 Rh6DG006000 Rh7AG255100 Rh7BG360600 Rh7CG271700 Rh7CG482300 Rh7DG451200
rosa_wichuraiana Rw4G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 32
AciI CCGC 4 cut(s) 5, 32, 252, 305
AclWI GGATC 1 cut(s) 287
AcuI CTGAAG 2 cut(s) 39, 59
AgsI TTSAA 1 cut(s) 333
AluBI AGCT 2 cut(s) 79, 200
AluI AGCT 2 cut(s) 79, 200
Alw26I GTCTC 1 cut(s) 306
AlwI GGATC 1 cut(s) 287
ApeKI GCWGC 3 cut(s) 191, 194, 197
BbvI GCAGC 3 cut(s) 178, 206, 209
BcoDI GTCTC 1 cut(s) 306
BfmI CTRYAG 1 cut(s) 192
BisI GCNGC 3 cut(s) 192, 195, 198
BlsI GCNGC 3 cut(s) 193, 196, 199
BpuEI CTTGAG 1 cut(s) 101
BsaWI WCCGGW 1 cut(s) 295
Bse118I RCCGGY 1 cut(s) 182
Bse1I ACTGG 1 cut(s) 113
BseNI ACTGG 1 cut(s) 113
BseRI GAGGAG 2 cut(s) 23, 89
BseXI GCAGC 3 cut(s) 178, 206, 209
Bsh1236I CGCG 1 cut(s) 32
Bsh1285I CGRYCG 1 cut(s) 256
BsiEI CGRYCG 1 cut(s) 256
BsiSI CCGG 2 cut(s) 183, 296
BsmAI GTCTC 1 cut(s) 306
Bsp143I GATC 1 cut(s) 292
BspACI CCGC 4 cut(s) 5, 32, 252, 305
BspFNI CGCG 1 cut(s) 32
BspMAI CTGCAG 1 cut(s) 196
BspPI GGATC 1 cut(s) 287
BsrFI RCCGGY 1 cut(s) 182
BsrI ACTGG 1 cut(s) 113
BssAI RCCGGY 1 cut(s) 182
BssMI GATC 1 cut(s) 292
BstFNI CGCG 1 cut(s) 32
BstKTI GATC 1 cut(s) 295
BstMAI GTCTC 1 cut(s) 306
BstMBI GATC 1 cut(s) 292
BstMCI CGRYCG 1 cut(s) 256
BstMWI GCNNNNNNNGC 7 cut(s) 22, 97, 188, 197, 206, 215, 224
BstSFI CTRYAG 1 cut(s) 192
BstUI CGCG 1 cut(s) 32
BstV1I GCAGC 3 cut(s) 178, 206, 209
Cfr10I RCCGGY 1 cut(s) 182
CseI GACGC 1 cut(s) 38
CviAII CATG 1 cut(s) 205
CviJI RGCY 7 cut(s) 16, 79, 100, 200, 209, 227, 232
CviKI_1 RGCY 7 cut(s) 16, 79, 100, 200, 209, 227, 232
DpnI GATC 1 cut(s) 294
DpnII GATC 1 cut(s) 292
EciI GGCGGA 2 cut(s) 20, 294
Eco32I GATATC 1 cut(s) 277
Eco57I CTGAAG 2 cut(s) 39, 59
EcoRV GATATC 1 cut(s) 277
FaeI CATG 1 cut(s) 208
FaiI YATR 2 cut(s) 65, 206
FatI CATG 1 cut(s) 204
Fnu4HI GCNGC 3 cut(s) 192, 195, 198
Fsp4HI GCNGC 3 cut(s) 192, 195, 198
GluI GCNGC 3 cut(s) 192, 195, 198
HapII CCGG 2 cut(s) 183, 296
HgaI GACGC 1 cut(s) 38
Hin1II CATG 1 cut(s) 208
HpaII CCGG 2 cut(s) 183, 296
Hpy188I TCNGA 1 cut(s) 240
Hpy188III TCNNGA 2 cut(s) 104, 246
HpyAV CCTTC 1 cut(s) 34
HpyCH4V TGCA 1 cut(s) 194
HpyF10VI GCNNNNNNNGC 7 cut(s) 22, 97, 188, 197, 206, 215, 224
Hsp92II CATG 1 cut(s) 208
Kzo9I GATC 1 cut(s) 292
LmnI GCTCC 2 cut(s) 76, 223
LpnPI CCDG 9 cut(s) 30, 77, 94, 117, 125, 196, 231, 309, 323
Lsp1109I GCAGC 3 cut(s) 178, 206, 209
MalI GATC 1 cut(s) 294
MboI GATC 1 cut(s) 292
MboII GAAGA 1 cut(s) 271
MfeI CAATTG 1 cut(s) 48
MluCI AATT 3 cut(s) 48, 269, 333
MnlI CCTC 4 cut(s) 67, 76, 111, 234
MspI CCGG 2 cut(s) 183, 296
MunI CAATTG 1 cut(s) 48
MvnI CGCG 1 cut(s) 32
MwoI GCNNNNNNNGC 7 cut(s) 22, 97, 188, 197, 206, 215, 224
NdeII GATC 1 cut(s) 292
NlaIII CATG 1 cut(s) 208
PkrI GCNGC 3 cut(s) 193, 196, 199
PstI CTGCAG 1 cut(s) 196
SatI GCNGC 3 cut(s) 192, 195, 198
Sau3AI GATC 1 cut(s) 292
SetI ASST 3 cut(s) 81, 202, 245
SfcI CTRYAG 1 cut(s) 192
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
Sse9I AATT 3 cut(s) 48, 269, 333
SsiI CCGC 4 cut(s) 5, 32, 252, 305
TaqI TCGA 1 cut(s) 291
TasI AATT 3 cut(s) 48, 269, 333
TseI GCWGC 3 cut(s) 191, 194, 197
TspDTI ATGAA 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.