Rh2DG482600

ATPase 11, plasma

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000545
Physical Location & Seq
Forward (+)
69761867 .. 69762141
275 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG482600.1

Sequence Viewer

Length: 177 bp
ATGGCGGATGAGAAGCCTGAAGTGCTTGACGCGGTGCTGAAGGAAACAGTTGATTTGGAAAACATACCCATTGAGGAGGTGCTTGAGAATATGAGATGTAGCAAAGAGGGTCTCAGTAGTGAGGCTGCTGAGGAAAGATTAGCCATTTTTGGGTATAACAAGCTTGAGGAAAAGAAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

59

Amino Acids

6.7

Weight (kDa)

4.39

Isoelectric Point (pI)

45.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cation_ATPase_N PF00690 21 - 59 3e-09 Cation transporter/ATPase, N-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000545)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36571
pyrus_communis pycom02g01560 pycom08g10820 pycom09g05820 pycom13g21850 pycom14g16010
rosa_chinensis RchiOBHm_Chr2g0094861 RchiOBHm_Chr2g0124911 RchiOBHm_Chr2g0138581 RchiOBHm_Chr2g0160851 RchiOBHm_Chr4g0407411
rosa_laevigata RLG00000001652 RLG00000001872 RLG00000002037 RLG00000003076 RLG00000006419 RLG00000016771 RLG00000017383 RLG00000022851 RLG00000030563 RLG00000033869 RLG00000034176
rosa_multiflora Rmu_co8013424.1_g000001 Rmu_co8016716.1_g000001 Rmu_co8183472.1_g000001 Rmu_co8254047.1_g000001 Rmu_co8354891.1_g000001 Rmu_sc0000124.1_g000003 Rmu_sc0002132.1_g000027 Rmu_sc0003007.1_g000011 Rmu_sc0003221.1_g000096 Rmu_sc0003221.1_g000097 Rmu_sc0005119.1_g000004 Rmu_sc0008057.1_g000005 Rmu_sc0034532.1_g000001 Rmu_sc0036406.1_g000001 Rmu_ssc0000008.1_g000009
rosa_roxburghii Rroxscaffold_1G00030520 Rroxscaffold_2G00107360 Rroxscaffold_2G00153420 Rroxscaffold_5G00335750 Rroxscaffold_5G00351760 Rroxscaffold_5G00352080 Rroxscaffold_6G00419090
rosa_rugosa Rorug01G0341800 Rorug01G0341900 Rorug02G0180200 Rorug02G0180300 Rorug03G0186100 Rorug03G0186200 Rorug03G0284800 Rorug04G0104500 Rorug05G0246300 Rorug06G0108400 Rorug06G0471500 Rorug06G0510400
rosa_samantha Rh1AG159000 Rh1CG148200 Rh1CG189900 Rh2AG552800 Rh2BG473900 Rh2BG612100 Rh2BG612300 Rh2DG094500 Rh2DG482600 Rh3BG234000 Rh3CG320000 Rh4AG144200 Rh4BG127900 Rh4DG097300 Rh5AG128900 Rh5AG381200 Rh5BG363000 Rh5DG491900 Rh6AG048400 Rh6BG168100 Rh6CG005800 Rh6DG006000 Rh7AG255100 Rh7BG360600 Rh7CG271700 Rh7CG482300 Rh7DG451200
rosa_wichuraiana Rw4G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 32
AciI CCGC 2 cut(s) 5, 32
AcuI CTGAAG 2 cut(s) 39, 59
AfiI CCNNNNNNNGG 1 cut(s) 150
AluBI AGCT 1 cut(s) 163
AluI AGCT 1 cut(s) 163
Alw26I GTCTC 1 cut(s) 116
ApeKI GCWGC 1 cut(s) 125
BbvCI CCTCAGC 1 cut(s) 129
BbvI GCAGC 1 cut(s) 112
BcoDI GTCTC 1 cut(s) 116
BisI GCNGC 1 cut(s) 126
BlsI GCNGC 1 cut(s) 127
Bpu10I CCTNAGC 1 cut(s) 129
BpuEI CTTGAG 1 cut(s) 104
BsaI GGTCTC 1 cut(s) 116
Bsc4I CCNNNNNNNGG 1 cut(s) 150
BseGI GGATG 1 cut(s) 13
BseLI CCNNNNNNNGG 1 cut(s) 150
BseMII CTCAG 2 cut(s) 120, 127
BseRI GAGGAG 1 cut(s) 89
BseXI GCAGC 1 cut(s) 112
Bsh1236I CGCG 1 cut(s) 32
BslI CCNNNNNNNGG 1 cut(s) 150
BsmAI GTCTC 1 cut(s) 116
Bso31I GGTCTC 1 cut(s) 116
BspACI CCGC 2 cut(s) 5, 32
BspCNI CTCAG 2 cut(s) 121, 126
BspFNI CGCG 1 cut(s) 32
BspTNI GGTCTC 1 cut(s) 116
Bst4CI ACNGT 1 cut(s) 49
BstDEI CTNAG 2 cut(s) 113, 129
BstF5I GGATG 1 cut(s) 13
BstFNI CGCG 1 cut(s) 32
BstMAI GTCTC 1 cut(s) 116
BstMWI GCNNNNNNNGC 1 cut(s) 22
BstUI CGCG 1 cut(s) 32
BstV1I GCAGC 1 cut(s) 112
BtsCI GGATG 1 cut(s) 13
CseI GACGC 1 cut(s) 38
CviJI RGCY 4 cut(s) 16, 125, 143, 163
CviKI_1 RGCY 4 cut(s) 16, 125, 143, 163
DdeI CTNAG 2 cut(s) 113, 129
EciI GGCGGA 1 cut(s) 20
Eco31I GGTCTC 1 cut(s) 116
Eco57I CTGAAG 2 cut(s) 39, 59
FaiI YATR 3 cut(s) 65, 92, 156
Fnu4HI GCNGC 1 cut(s) 126
FokI GGATG 1 cut(s) 20
Fsp4HI GCNGC 1 cut(s) 126
GluI GCNGC 1 cut(s) 126
HgaI GACGC 1 cut(s) 38
HindIII AAGCTT 1 cut(s) 161
HpyAV CCTTC 1 cut(s) 34
HpyCH4III ACNGT 1 cut(s) 49
HpyF10VI GCNNNNNNNGC 1 cut(s) 22
HpyF3I CTNAG 2 cut(s) 113, 129
LpnPI CCDG 1 cut(s) 30
Lsp1109I GCAGC 1 cut(s) 112
MnlI CCTC 6 cut(s) 67, 70, 100, 115, 124, 160
MvnI CGCG 1 cut(s) 32
MwoI GCNNNNNNNGC 1 cut(s) 22
PkrI GCNGC 1 cut(s) 127
SatI GCNGC 1 cut(s) 126
SetI ASST 2 cut(s) 81, 165
SgeI CNNG 5 cut(s) 29, 38, 43, 95, 172
SmlI CTYRAG 2 cut(s) 83, 164
SmoI CTYRAG 2 cut(s) 83, 164
SsiI CCGC 2 cut(s) 5, 32
TaaI ACNGT 1 cut(s) 49
TseI GCWGC 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.